These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1073 fasta sequence [CTCCAGGCCAANAATTTGGCACGAGGTGATAAACTGNGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAATTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTCCAAAAGCATGAGTCACTACATTGTTTCTTTTCTAACTGTAAAGTTGTAAGTCGTGCTGATGCATGATGTCAACCAAGCTGTAGACCTTTCTCTCATCCTACTCTTGATGTTATTAAAAGTCTGCAGAATAAATCGGGATTTTACGAGAATAGTTCATCTTGAAACTGGGACCTGCTTCTAACAGCTATAATTTAATCGTAATTTGTGACACCTCTTTATTGGTATAACAAATATATATAATGCTACCTTCATTGAATTGTCCAGTCTAGCAAAAACCAATAGTGAACTAACTTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT] [+] EMBL CD079761 [CTCCAGGCCAANAATTTGGCACGAGGTGATAAACTGNGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAATTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTCCAAAAGCATGAGTCACTACATTGTTTCTTTTCTAACTGTAAAGTTGTAAGTCGTGCTGATGCATGATGTCAACCAAGCTGTAGACCTTTCTCTCATCCTACTCTTGATGTTATTAAAAGTCTGCAGAATAAATCGGGATTTTACGAGAATAGTTCATCTTGAAACTGGGACCTGCTTCTAACAGCTATAATTTAATCGTAATTTGTGACACCTCTTTATTGGTATAACAAATATATATAATGCTACCTTCATTGAATTGTCCAGTCTAGCAAAAACCAATAGTGAACTAACTTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGNAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTG ] [-] EMBL CD074021 [ TTGTCCAGTCTAGCAAAAACCAATAGTGAACTAACTTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCACTCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT] [-] EMBL CD075909 [ GTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT] [-] EMBL CD128796 [ AATGACTTATCATGAAATGTACAGAAGCACTCCCCTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTAACAGAAACTGTGCCAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGT ATATACTAAGGGTGAgctc ] [-] EMBL CD128885 [ GACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGAgctca ] [-] EMBL CD132378 [ TTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGT ] consensusID : consensus_9403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [ATCCTCGGTACGAGGCACCTCCAGTTTTTGGGTCTTTATTACGAAACTAAAGTAATTAGTAAATGAGAAAACATCAAAAATAAAACGAAATGTTTTCTTGGTTATGTCGTTTACTTGAAATCTGTTCATTAACACCTGTGCGGTCAATTGACTTTCAGTAAAGGGCCAGACATAAACAAGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATACCAGGTGTTATCGCCACCCATCCAGAGTAATTGTGTATTGAATGAAGAGCTTGTTGTGTCACGACTTTTATCACAATGCGGATTCTAATGAGCCATTCACCAACGTTATAAGATTCTGCAATGATAAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTTCAAAGCATGAGTCACTACATTGTTTCTTTTCTACTGTAAAGT] [+] EMBL CD082307 [ATCCTCGGTACGAGGCACCTCCAGTTTTTGGGTCTTTATTACGAAACTAAAGTAATTAGTAAATGAGAAAACATCAAAAATAAAACGAAATGTTTTCTTGGTTATGTCGTTTACTTGAAATCTGTTCATTAACACCTGTGCGGTCAATTGACTTTCAGTAAAGGGCCAGACATAAACAAGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATACCAGGTGTTATCGCCACCCATCCAGAGTAATTGTGTATTGAATGAAGAGCTTGTTGTGTCACGACTTTTATCACAATGCGGATTCTAATGAGCCATTCACCAACGTTATAAGATTCTGCAATGATAAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTTCAAAGCATGAGTCACTACATTGTTTCTTTTCTACTGTAAAGT] consensusID : consensus_9403#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 456 fasta sequence [CGGCACGAGGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATACCCAGGGGTTATTTCCACCCANNNNNNNNCNTATTATAGAAAAAAACTGGNGGGGGGGGCTTTTATTCTCATGCGGATTCTAATGAGCCATTCTCCCCCCGTATAAGATTCTGCAATGATGAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAGAATAACTTCGGATTAA] [+] EMBL CD077547 [CGGCACGAGGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATAC ] [-] EMBL CD186084 [ AATGGCCAGTTTTATGCGATAANTATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATAACCAGGGGTTATTTCCACCCANNNNNNNNCNTATTATAGAAAAAAACTGGNGGGGGGGGCTTTTATTCTCATGCGGATTCTAATGAGCCATTCTCCCCCCGTATAAGATTCTGCAATGATGAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAGAATAACTTCGGATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9403#1 ------------------------------------------------------------ consensus_9403#2 ------------------------------------------------------------ consensus_9403#0 CTCCAGGCCAANAATTTGGCACGAGGTGATAAACTGNGTTTCCTAAAAAATTGTTGCTTA 60 consensus_9403#1 ------------------------------------------------------------ consensus_9403#2 ------------------------------------------------------------ consensus_9403#0 TAGTTACGGAATCCAATTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGG 120 consensus_9403#1 ------------------------------------------------------------ consensus_9403#2 ------------------------------------------------------------ consensus_9403#0 TTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTC 180 consensus_9403#1 ------------------------------------------------------------ consensus_9403#2 ------------------------------------------------------------ consensus_9403#0 GAGTGTCTCCAAAAGCATGAGTCACTACATTGTTTCTTTTCTAACTGTAAAGTTGTAAGT 240 consensus_9403#1 -------------------------ATCCTCGGTACGAGGCACCTCCAGTTTTTGGGTCT 35 consensus_9403#2 ------------------------------------------------------------ consensus_9403#0 CGTGCTGATGCATGATGTCAACCAAGCTGTAGACCTTTCTCTCATCCTACTCTTGATGTT 300 consensus_9403#1 TTATTACGAAACTAAAGTAATTAGTAAATGAGAAAACATCAAAAATAAAACGAAATGTTT 95 consensus_9403#2 ------------------------------------------------------------ consensus_9403#0 ATTAAAAGTCTGCAGAATAAATCGGGATTTTACGAGAATAGTTCATCTTGAAACTGGGAC 360 consensus_9403#1 TCTTGGTTATGTCGTTTACTTGAAATCTGTTCATTAACACCTGTGCGGTCAATTGACTTT 155 consensus_9403#2 ------------------------------------------------------------ consensus_9403#0 CTGCTTCTAACAGCTATAATTTAATCGTAATTTGTGACACCTCTTTATTGGTATAACAAA 420 consensus_9403#1 CA-GTAAAGGGCCAGACATAAACAAGTGCAAATCCGACCAAAGGTCAGCACCGGTT---C 211 consensus_9403#2 ----------------CGGCACGAGGTGCAAATCCGACCAAAGGTCAGCACCGGTT---C 41 consensus_9403#0 TATATATAATGCTACCTTCATTGAATTGTCCAGTCTAGCAAAAACCAATAGTGAACTAAC 480 * ** * * * **** ** * * * consensus_9403#1 TTGTTGAAC---AAATGGCCAGTTTTA---TGCGATAAATATATAGATTGATTATATTTA 265 consensus_9403#2 TTGTTGAAC---AAATGGCCAGTTTTA---TGCGATAAATATATAGATTGATTATATTTA 95 consensus_9403#0 TTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAA 540 **** ** * * * * *** *** *** * * * * * * * * consensus_9403#1 GGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGA 325 consensus_9403#2 GGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGA 155 consensus_9403#0 ACTTTATTTTTCTACCAAAAATGACTTA-TCATGAAATGTACAGAAGCACT-ACACTGGG 598 * ******* * * ** * ** * ** * *** ** * * * * * * * consensus_9403#1 AACCATT---------GCCATGGTTAACA-GCTAATTCAGAATCTAAGAATGCTTG---- 371 consensus_9403#2 AACCATT---------GCCATGGTTAACA-GCTAATTCAGAATCTAAGAATGCTTG---- 201 consensus_9403#0 GACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAAT 658 ** * * *** * * * * * **** ** *** ** * ** ** consensus_9403#1 ------TCGGGTAATACC-AGGTGTTATCGCCACCCATCCAGAGTAATTGTGTATTGAAT 424 consensus_9403#2 ------TCGGGTAATACCCAGGGGTTATTTCCACCCANNNNNNNN-----CNTATTATAG 250 consensus_9403#0 GGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGT 718 *** ** * * * * * * consensus_9403#1 GAAGAGCT------TGTTGTGTCACGACTTTTATCACAATGCGGATTCTAATGAGCCATT 478 consensus_9403#2 AAAAAAAC------TGGNGGGGGG-GGCTTTTATTCTCATGCGGATTCTAATGAGCCATT 303 consensus_9403#0 TAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATG 778 ** * * * * ** * * * * * * ** consensus_9403#1 --CACCAACGTTATAAGATTCTGCAATGATAAACTGGTTTCCTA---------------- 520 consensus_9403#2 --CTCCCCCCGTATAAGATTCTGCAATGATGAACTGGTTTCCTA---------------- 345 consensus_9403#0 GACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAA 838 * * * *** * *** * * * * * *** consensus_9403#1 ---AAAAATTGTTGCTTATAGTTACG-GAATCCAAG--TGATTTTC---AAAACATTGTT 571 consensus_9403#2 ---AAAAATTGTTGCTTATAGTTACG-GAATCCAAG--TGATTTTC---AAAACATTGTT 396 consensus_9403#0 GATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGT 898 ****** ******* * * **** *** * ** * **** ** * consensus_9403#1 ATT-TCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAA-AATAACTTCGGATT 629 consensus_9403#2 ATT-TCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAG-AATAACTTCGGATT 454 consensus_9403#0 ATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACA 958 ** ** * *** * * * ***** * * ** * * * ** * consensus_9403#1 AAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTTCAA-AGCATGAGTCACTACATTGTT 688 consensus_9403#2 AA---------------------------------------------------------- 456 consensus_9403#0 ACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTA 1018 * consensus_9403#1 TCTTTTCTACTGTAAAGT------------------------------------- 706 consensus_9403#2 ------------------------------------------------------- consensus_9403#0 ATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT 1073 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||