cluster # 9408

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Schistosoma mansoni
cluster # 9408 cluster # 9408 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9408#0 length = 543 sequences # 7

consensus_9408#1 length = 373 sequences # 1
consensus_9408#2 length = 186 sequences # 1

consensusID : consensus_9408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 543
fasta sequence

                              [AGGCGCGACTTTTGGTAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATTATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTTGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAAGTACCTTTAAAACGTTAGATTCGTGGAGAGATGAGTTTTTGGTGCAATCAAGCCCTCGTAATCCCGAAAGGTTTCCATTTATTGTAATTGGGAATAAATGTGATCTAGATAATAGAGCTGTATCCGAAAATCGTGCAAAGCAATGGTGTCAAGCAAATGGTAACCTTCCATATTTTGAATGTAGTGCTAAGAAA]

[-] EMBL CD189977             [AGGCGCGACTTTTGGTAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATTATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTTTTGTAACAATGCAGATTTGGGA                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD189990             [AGGCGCGACTTTTGGTAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATTATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTTTTGTAACAATGCAGATTTGGGA                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD121118             [       ACTTTTGGTAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATTATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTCGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAAGTACCTTTAAAACGTTAGATTCGTGGAGAGATGAGTTTTTGGTGCAATCAAGCCCTCGTAATCCCGAAAGGTTTCCATTTATTGTAATTGGGAATAAATGTGATCTAGATAATAGAGCTGTATCCGAAAATCGTGCAAA                                                       ]
[+] EMBL CD120934             [       ACTTTTGGTAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATTATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTTGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAAGTACCTTTAAAACGTTAGATTCGTGGAGAGATGAGTTTTTGGTGCAATCAAGCCCTCGTAATCCCGAAAGGTTTCCATTTATTGTAATTGGGAATAAATGTGATCTAGATAATAGAGCTGTATCCGAAAATCGTGCAAA                                                       ]
[+] EMBL CD188839             [               TAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATTATATAGGTTATGGTCATCAAGAAG AAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTTGTAACAATGCAGATTTGGG                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD083418             [                                    GGCATTGTAATTTCTACTTAGATTATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTTGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAAGTACCTTTAAAACGTTAGATTCGTGGAGAGATGAGTTTTTGGTGCAATCAAGCCCTCGTAATCCCGAAAGGTTTCCATTTATTGTAATTGGGAATAAATGTGATCTAGATAATAGAGCTGTATCCGAAAATCGTGCAAAGCAATGGTGTCAAGCAAATGGTAACCTTCCATATTTTGAATGTAGTGCTA     ]
[+] EMBL BE505147             [                                                                              AAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGTGGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTACAAAGCCACAATCGGCGCAGACTTTTTTACAAAACAAGAAGTTTTTGATGACCGTCTTGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATNATGTTACTATGACAAGTACCTTT AAACGTTAGATTCGTGGAGARATGAGTTTTTGGTGC ATCAAGCCCTCGTAATCCCGAAA GTTTCCATTTATTGTAATTGGG ATAAATGTGATCTAGATAATAGAGCTGTATCCG AAATCGTGC AAGCAATGGTGTC AGC AATGGTAACCTTCCATANTTTGAATGTAGTGCTAAGAAA]




>consensus_9408#0
AGGCGCGACTTTTGGTAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATT
ATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGT
GGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTAC
AAAGCCACAATCGGTGCAGACTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTTGTA
ACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTT
TATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAAGTACCTTTAAA
ACGTTAGATTCGTGGAGAGATGAGTTTTTGGTGCAATCAAGCCCTCGTAATCCCGAAAGG
TTTCCATTTATTGTAATTGGGAATAAATGTGATCTAGATAATAGAGCTGTATCCGAAAAT
CGTGCAAAGCAATGGTGTCAAGCAAATGGTAACCTTCCATATTTTGAATGTAGTGCTAAG
AAA

consensusID : consensus_9408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [CTTTAAACGAGTCAGATAAAACCAGTGCACTATTAAATAGTCCACAGCTGATAATAATCTAAATGAACAATGTTATTTAACAAGACAAAATAGCTATTAATTAATCTTACGATAAAAATGGAAAACTCACCGCAGACTCTTCGTCTATGGCGACTCCTATAATATGAGCAAAAGCTTTCTCAACATTTGTATTTTCTTTAGCACTACATTCAAAATATGGAAGGTTACCATTTGCTTGACACCATTGCTTTGCACGATTTTCGGATACCTACATAAAATGGGCAAAACGTAAACTGACCAGTTAAGATACGAAACATGTCTAAAATTGTACAGAAACTCTACTTTTGCAGGGGAGAACGATGATATNAGATGT]

[+] EMBL CD089653             [CTTTAAACGAGTCAGATAAAACCAGTGCACTATTAAATAGTCCACAGCTGATAATAATCTAAATGAACAATGTTATTTAACAAGACAAAATAGCTATTAATTAATCTTACGATAAAAATGGAAAACTCACCGCAGACTCTTCGTCTATGGCGACTCCTATAATATGAGCAAAAGCTTTCTCAACATTTGTATTTTCTTTAGCACTACATTCAAAATATGGAAGGTTACCATTTGCTTGACACCATTGCTTTGCACGATTTTCGGATACCTACATAAAATGGGCAAAACGTAAACTGACCAGTTAAGATACGAAACATGTCTAAAATTGTACAGAAACTCTACTTTTGCAGGGGAGAACGATGATATNAGATGT]




>consensus_9408#1
CTTTAAACGAGTCAGATAAAACCAGTGCACTATTAAATAGTCCACAGCTGATAATAATCT
AAATGAACAATGTTATTTAACAAGACAAAATAGCTATTAATTAATCTTACGATAAAAATG
GAAAACTCACCGCAGACTCTTCGTCTATGGCGACTCCTATAATATGAGCAAAAGCTTTCT
CAACATTTGTATTTTCTTTAGCACTACATTCAAAATATGGAAGGTTACCATTTGCTTGAC
ACCATTGCTTTGCACGATTTTCGGATACCTACATAAAATGGGCAAAACGTAAACTGACCA
GTTAAGATACGAAACATGTCTAAAATTGTACAGAAACTCTACTTTTGCAGGGGAGAACGA
TGATATNAGATGT

consensusID : consensus_9408#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [GGCCAGAATTCGGCACGAGGGGGTGGCAGACTTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTTGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAAGTACCT]

[+] EMBL CD077407             [GGCCAGAATTCGGCACGAGGGGGTGGCAGACTTTTTTTACAAAACAAGAGGTTTTTGATGACCGTCTTGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAAGTACCT]




>consensus_9408#2
GGCCAGAATTCGGCACGAGGGGGTGGCAGACTTTTTTTACAAAACAAGAGGTTTTTGATG
ACCGTCTTGTAACAATGCAGATTTGGGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCG
GAGTTGCGTTTTATCGTGGTGCCGATTGTTGTGTCCTCGTCTATGATGTTACTATGACAA
GTACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9408#0      AGGCGCGACTTTTGGTAGAGAGGCTACAATTGCCAAGGCATTGTAATTTCTACTTAGATT 60
consensus_9408#2      ------------------------------------------------------------
consensus_9408#1      ------------------------------------------------------------
                                                                                  

consensus_9408#0      ATATAGGTTATGGTCATCAAGAAGAAAATATCATTGAAGATTATTGTAATCGGGGATAGT 120
consensus_9408#2      ------------------------------------------------------------
consensus_9408#1      ------------------------------------------------------------
                                                                                  

consensus_9408#0      GGTGTTGGGAAAACGTCTTTGATAACCCAATACATCGATAAGAAGTTCAGTAATCAGTAC 180
consensus_9408#2      --------------------------------------------GGCCAGAATTCGGCAC 16
consensus_9408#1      ------CTTTAAACGAGTCAGATAAAACCAGTGCACTATTAAATAGTCCACAGCTGATAA 54
                                                                     *   *      * 

consensus_9408#0      AAAGCCACAATCGGTGCAGACTTTTTT-ACAAAACAAGA-GGTTTTTGAT-GACCGTCTT 237
consensus_9408#2      GAGGGGGTG------GCAGACTTTTTTTACAAAACAAGA-GGTTTTTGAT-GACCGTCTT 68
consensus_9408#1      TAATCTAAAT---GAACAATGTTATTTAACAAGACAAAATAGCTATTAATTAATCTTACG 111
                       *              **   ** *** **** **** *  * * ** **  * * *   

consensus_9408#0      GTAACAATGCAGATTTG---GGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTT 294
consensus_9408#2      GTAACAATGCAGATTTG---GGATACTGCTGGCCAGGAAAGATTCCAGTCTCTCGGAGTT 125
consensus_9408#1      ATAAAAATGGAAAACTCACCGCAGACTCTTCGTCTATGGCGACTCCTATAATATGAGCAA 171
                       *** **** * *  *    * * ***  * * *      ** ***  *     *     

consensus_9408#0      GCGTTTTATCGTGGTGCCGATTGTTGT--GTCCT-CGTCTATGATGTT-ACTATGACAAG 350
consensus_9408#2      GCGTTTTATCGTGGTGCCGATTGTTGT--GTCCT-CGTCTATGATGTT-ACTATGACAAG 181
consensus_9408#1      AAGCTTTCTCAACATTTGTATTTTCTTTAGCACTACATTCAAAATATGGAAGGTTACCAT 231
                        * *** **    *    *** *  *  *  ** * *  *  ** *  *   * ** * 

consensus_9408#0      TACCTTTAAAACGTTAGATTCGTGGAGAGATGAGTTTTTGGTGCAATCAAGCCCTCGTAA 410
consensus_9408#2      TACCT------------------------------------------------------- 186
consensus_9408#1      TTGCTTGACACCATTGCTTTGCACGATTTTCGGATACCTACATAAAATGGGCAAAACGTA 291
                      *  **                                                       

consensus_9408#0      TCCCGAAAGGTTTCCATTTATTGTAATTGGGAATAAATGTGATCTAGATAATAGAGCTGT 470
consensus_9408#2      ------------------------------------------------------------
consensus_9408#1      AACTGACCAGTTAAGATACGAAACATGTCTAAAATTGTACAGAAACTCTACTTTTGCAGG 351
                                                                                  

consensus_9408#0      ATCCGAAAATCGTGCAAAGCAATGGTGTCAAGCAAATGGTAACCTTCCATATTTTGAATG 530
consensus_9408#2      ------------------------------------------------------------
consensus_9408#1      GGAGAACGATGATATNAGATGT-------------------------------------- 373
                                                                                  

consensus_9408#0      TAGTGCTAAGAAA 543
consensus_9408#2      -------------
consensus_9408#1      -------------