These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 609 fasta sequence [AATGTTATATTATGGCATATTGAAGCGAACGAAACATATGTTTATTAATTTACAAATTCAACACAACGTATACTTTATTAGGTGCATCATGGCGCAGTACACTTACAAAAATGAAACAAAAGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT-GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATATACTTTCCAAAGAAAGCAGTTGAAGTGCGGTAGCCTTTGAATCTGCAAGTAAACGATTTTGAATATNAAAAC] [+] EMBL CD077326 [AATGTTATATTATGGCATATTGAAGCGAACGAAACATATGTTTATTAATTTACAAATTCAACACAACGTATACTTTATTAGGTGCATCATGGCGCAGTACACTTACAAAAATGAAACAAAAGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAAAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTC ] [+] EMBL CD197621 [ CACTTACAAAAATGAAACAAAAGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATATACTTTCCAAAGAAAGCAGTT ] [+] EMBL CD140812 [ ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATAACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATATACTTTCCAAAGAAAGCAGTTGAAGTGCGGTAGCCTTTGAATCTGCAAGTAAACGATTTTGAATATNAAAAC] [-] EMBL SMAA69225 [ TCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTNGAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGAC ] consensusID : consensus_9410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 454 fasta sequence [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAAAAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATTACGTACAGTATTATTAAA] [+] EMBL CD140755 [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAAAAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATTACGTACAGTATTATTAAA] [+] EMBL CD140907 [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAATAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATTACGTACAGTATTATTAA ] [+] EMBL CD140843 [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAAAAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATT ] consensusID : consensus_9410#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [AATTTATAGGAGCAACTTTATTGTCATTACAAGGAGTCTTGTATCTTATTTAATAATACTGTACGTAATGTACATTATTAATACTTGTGAACTTACACCATTAAAAGAATGGTTTTGGTATGGCTAAAAAAGTGCTTTTCCAAAAAATTTTACGTTAAAAAAAAATAAATGTCGAATAATTTTAATCCTTGGACCAAAAAAACGTGGAAAAGTTTTTACGAGTGGATCGTTTTAGCAAAAACTAATTTTTTTCAGTCAAATTATCTTAAGGGGGGCAAAAAAGTTCGGCAAGGCTTCAGGGACACTTAAAGGAAATTAAAACAGGAGGTTTTGGGAAAAACTC] [+] EMBL AI723349 [AATTTATAGGAGCAACTTTATTGTCATTACAAGGAGTCTTGTATCTTATTTAATAATACTGTACGTAATGTACATTATTAATACTTGTGAACTTACACCATTAAAAGAATGGTTTTGGTATGGCTAAAAAAGTGCTTTTCCAAAAAATTTTACGTTAAAAAAAAATAAATGTCGAATAATTTTAATCCTTGGACCAAAAAAACGTGGAAAAGTTTTTACGAGTGGATCGTTTTAGCAAAAACTAATTTTTTTCAGTCAAATTATCTTAAGGGGGGCAAAAAAGTTCGGCAAGGCTTCAGGGACACTTAAAGGAAATTAAAACAGGAGGTTTTGGGAAAAACTC] consensusID : consensus_9410#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [TAAAGTTAAAGTGGCCTTTGCACTTCAAAATTGTCACATGATGAGATGGTTCTGCACCTTTTTCATATCTAAACCTTTATTGACGTTTTTCGAATTAATTTCTTTTCAGCATTGTTTCTACGAAATGCTCGTCAATCTCACTGTCAGAATGGGGGATTATACACAACTCAGTTTTTATATTCAAAGTCGTTTACTTGCAGATTCAAAGGCTACCGTAATACCTTATCTTATAAAAATGAGAACTTTG] [+] EMBL CD087089 [TAAAGTTAAAGTGGCCTTTGCACTTCAAAATTGTCACATGATGAGATGGTTCTGCACCTTTTTCATATCTAAACCTTTATTGACGTTTTTCGAATTAATTTCTTTTCAGCATTGTTTCTACGAAATGCTCGTCAATCTCACTGTCAGAATGGGGGATTATACACAACTCAGTTTTTATATTCAAAGTCGTTTACTTGCAGATTCAAAGGCTACCGTAATACCTTATCTTATAAAAATGAGAACTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9410#0 AATGTTATATTATGGCATATTGAAGCGAACGAAACATATGTTTATTAATTTACAAATTCA 60 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#0 ACACAACGTATACTTTATTAGGTGCATCATGGCGCAGTACACTTACAAAAATGAAACAAA 120 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#0 AGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAGAAGACATC 180 consensus_9410#1 ----------------------------------------------ATTAAGAAGACATC 14 consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#0 CATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGT 240 consensus_9410#1 CATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGT 74 consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#0 GTTCGGTACAATATTTACGGCATTCATCTGAATTCCAATAAGACTCCATACACATTGAAT 300 consensus_9410#1 GTTCGGTACAATATTTACGGCATTCATCTGAA-------AAAAACCGATAGAAATAAGCA 127 consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 -----------AATTTATAGGAGCAACTTTAT------TGTCATTACAAGGAGTCTTGTA 43 consensus_9410#0 TTTCTTTGAGAAA-ATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACA 359 consensus_9410#1 TTTCATTAATAATCATGGGAAT----GTATAACCAAGAAGAGCTTCATGTGTTTAAGTTT 183 consensus_9410#3 ---------------------------TAAAGTTAAAGTGGCCTTTGCACTTCAAAATTG 33 consensus_9410#2 TCTTATTTAATAATACTGTACGTAATGTACATT---ATTAATACTTGTGAACTTACACCA 100 ** * * consensus_9410#0 GCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTA 419 consensus_9410#1 GCATTATAATGGTTCCGTAAAGAC-CTAGACCAA-ACTATTGTT---ACGTCCCTTTAAG 238 consensus_9410#3 TCAC----ATGAT---GAGATGGTTCTGCACC-------TTTTT-------CATATCTAA 72 consensus_9410#2 TTAAAAGAATGGTTTTGGTATGGC--TAAAAAAGTGCTTTTCCAAAAAATTTTACGTTAA 158 * ** * * ** consensus_9410#0 GCAAATCTTAATGCC-TCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACT 478 consensus_9410#1 ATATATATTGATCTG-AATAAAATTAGGTTTTAGCTAAACGATGCATCTG-TAATACTTT 296 consensus_9410#3 ACCTTTATTGACGTT-TTTCGAATTAATTTCTTT-TCAGCATTGTTTCTA-CGAAATGCT 129 consensus_9410#2 AAAAAAATAAATGTCGAATAATTTTAATCCTTGGACCAAAAAAACGTGGA--AAAGTTTT 216 * * * * * * * * consensus_9410#0 GTTGCATGT-ATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATA 537 consensus_9410#1 TTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAA 356 consensus_9410#3 CGTCAATCTCACTG--TCAGAATGGGGGATTATACACAACTCA----GTTTTTATATTCA 183 consensus_9410#2 TACGAGTGG-ATCGTTTTAGCAAAAACTAATTTTTTTCAGTCAAATTATCTTAAGGGGGG 275 * * * * * consensus_9410#0 TACTTTCCAAAGAAAGCAGTTGAAGTGCGGTAG------CCTTTGAATCTGCAAGTAAAC 591 consensus_9410#1 AGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGAC 416 consensus_9410#3 AAGTCGTTTACTTGCAGATTCAAAGGCTACCGTAA----TACCTTATCTTATAAAAATGA 239 consensus_9410#2 CAAAAAAGTTCGGCAAGGCTTCAGGGACACTTAAA--------GGAAATTA-AAACAGGA 326 * * * * ** consensus_9410#0 GATTTTGAATA-TNAAAAC------------------- 609 consensus_9410#1 AAGTATTAATAATGTACATTACGTACAGTATTATTAAA 454 consensus_9410#3 GAACTTTG------------------------------ 247 consensus_9410#2 GGTTTTGGGAAAAACTC--------------------- 343 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||