These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 640 fasta sequence [CCTCCGAGGCCAANAATTCGGCACGAGG--AGTCACCAAACGTCGGATATACAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGAGGGTGCAGTAGCCTTCTACAAACGTTTCGGTTNTGAAATAACTGGAGAAGTTAGTGATTACTACCGNCGTATTCATCCCCAAACTGCCTACGTGCTCGAA] [+] EMBL CD080502 [CCTCCGAGGCCAANAATTCGGCACGAGG AGTCACCAAACGTCGGATATACAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGAGGGTGCAGTAGCCTTCTACAAACGTTTCGGTTNTGAAATAACTGGAGAAGTTAGTGATTACTACCGNCGTATTCATCCCCAAACTGCCTACGTGCTCGAA] [+] EMBL CD084007 [ CGAGGCCAGTCACCAAACGTCGGATAT CAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCA ] [+] EMBL AI976097 [ TCACCAAACGTCGGATATACAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTT ] [+] EMBL CD194833 [ GGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGAGGGTGCAGTAGCCTTCTACAAACGTTTCGGTTTTGAAATAACTGGAGAAGTTAGTGATTACTACCGCCGTATTCATCCCCAAACTGCCTACGTGCTCGAA] consensusID : consensus_9414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 410 fasta sequence [TCGCGCCTAAGTTGACCAGTCACCAAACGTCGGATATACAACC-TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA-AAAAGGTAGGAGTACTAATGAGAG-CAAAATATACAAAAAGATCGAGCT-CGGACAGCTTACTCCT-CATAACATCAAGCAGTTCAGATTGATA-AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA-ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGA] [-] EMBL CD183204 [TCGCGCCTAAGTTGACCAGTCACCAAACGTCGGATATACAACC TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCT CGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGA] [-] EMBL CD157245 [ GGATATACGACCTTTTGACGTGGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGTACAGTATAGGTAGGAGTACTAATGAGAGCCAGGAGATACGGTAAGGTCGAGCT CGGACAGCTTACTCCTGCATAACATCAAGCAGTTCAGAGTGATATAATCAAACTGTTGTCCCAGTCACATATACAGAGAAATTTAATAGTGATGTTCGGAAAAATAGTAAGATGTGCAGACTGGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAGTGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACATATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTA ] [-] EMBL CD157297 [ GGATATACAACC TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCTCCGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTGATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGACATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTA ] [-] EMBL CD157268 [ GGATATACAACC TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACT AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCT CGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTA ] [+] EMBL CD134613 [ GCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCT CGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9414#0 CCTCCGAGGCCAANAATTCGGCACGAGGAGTCACCAAACGTCGGATATACAACCTTAGAC 60 consensus_9414#1 ----------TCGCGCCTAAGT-TGACCAGTCACCAAACGTCGGATATACAACCTTAGAC 49 * * ** ******************************** consensus_9414#0 GTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAG 120 consensus_9414#1 GTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAG 109 ************************************************************ consensus_9414#0 GAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAA 180 consensus_9414#1 GAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAA 169 ************************************************************ consensus_9414#0 CATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATT 240 consensus_9414#1 CATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATT 229 ************************************************************ consensus_9414#0 TTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGT 300 consensus_9414#1 TTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGT 289 ************************************************************ consensus_9414#0 CGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTAC 360 consensus_9414#1 CGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTAC 349 ************************************************************ consensus_9414#0 GGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGG 420 consensus_9414#1 GGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGG 409 ************************************************************ consensus_9414#0 ATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAA 480 consensus_9414#1 A----------------------------------------------------------- 410 * consensus_9414#0 GAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGA 540 consensus_9414#1 ------------------------------------------------------------ consensus_9414#0 GGGTGCAGTAGCCTTCTACAAACGTTTCGGTTNTGAAATAACTGGAGAAGTTAGTGATTA 600 consensus_9414#1 ------------------------------------------------------------ consensus_9414#0 CTACCGNCGTATTCATCCCCAAACTGCCTACGTGCTCGAA 640 consensus_9414#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||