These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1207 fasta sequence [GAAAAAT-GTATTTT-ACAAAAT-ATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAATCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCACCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGTCCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAAAAGCAGG] [+] EMBL CD077074 [GAAAAAT GTATTTT ACAAAAT ATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACA ] [+] EMBL AA999550 [GAAAAATAGTATTTTAACAAAATAATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGANTAGGCAAACAATTCTTCATCACCTG ] [+] EMBL CD139789 [ GAACGCATTTCATGTAGTCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATG ] [-] EMBL AW017099 [ ATCTATTAATTGCCGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTANAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAATCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCACCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGTCCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAG ] [-] EMBL CD117835 [ CCNACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGA ] [+] EMBL CD091046 [ TTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGGCCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAAAAGCAGG] consensusID : consensus_9424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 355 fasta sequence [TTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAGTGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC] [+] EMBL CD184643 [TTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAGTGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC] [-] EMBL CD139728 [ ATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATT ] consensusID : consensus_9424#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCCCTCGTGCCGAATTTTAAGCCGCCAC] [-] EMBL CD077773 [TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCCCTCGTGCCGAATTTTAAGCCGCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9424#0 GAAAAATGTATTTTACAAAATATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATT 60 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 CTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATA 120 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 ATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTT 180 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 CTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCC 240 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 CAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAA 300 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 TCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTT 360 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 AAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTA 420 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 GATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGT 480 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 GTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATC 540 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 CCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAA 600 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 TCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCA 660 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 CCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGT 720 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 CCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACA 780 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 TCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTT 840 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 ------------------------------------------------------------ consensus_9424#0 TCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCT 900 consensus_9424#2 ----TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCT 56 consensus_9424#1 -----------------------------------------------------------T 1 * consensus_9424#0 TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 960 consensus_9424#2 TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 116 consensus_9424#1 TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 61 ************************************************************ consensus_9424#0 TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 1020 consensus_9424#2 TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 176 consensus_9424#1 TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 121 ************************************************************ consensus_9424#0 AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 1080 consensus_9424#2 AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 236 consensus_9424#1 AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 181 ************************************************************ consensus_9424#0 AATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTG 1140 consensus_9424#2 AATTTGTATTCATCCCTCGTGCCGAATTTTAA-GCCGCCAC------------------- 276 consensus_9424#1 AATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTG 241 ************** * * * ** * * * consensus_9424#0 TTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAA 1200 consensus_9424#2 ------------------------------------------------------------ consensus_9424#1 TTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAG 301 consensus_9424#0 AAGCAGG----------------------------------------------- 1207 consensus_9424#2 ------------------------------------------------------ consensus_9424#1 TGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC 355 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||