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Schistosoma mansoni
cluster # 9424 cluster # 9424       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9424#0 length = 1207 sequences # 6  
consensus_9424#1 length = 355 sequences # 2  
consensus_9424#2 length = 276 sequences # 1  

consensusID : consensus_9424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1207
fasta sequence
                              [GAAAAAT-GTATTTT-ACAAAAT-ATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAATCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCACCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGTCCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAAAAGCAGG]

[+] EMBL CD077074             [GAAAAAT GTATTTT ACAAAAT ATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AA999550             [GAAAAATAGTATTTTAACAAAATAATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGANTAGGCAAACAATTCTTCATCACCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD139789             [                                                                                                                                                                                                                                                               GAACGCATTTCATGTAGTCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AW017099             [                                                                                                                                                                                                                                                                                                                                                                                ATCTATTAATTGCCGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTANAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAATCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCACCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGTCCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAG                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD117835             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCNACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGA                                                                                                            ]
[+] EMBL CD091046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGGCCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAAAAGCAGG]


>consensus_9424#0 GAAAAATGTATTTTACAAAATATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATT CTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATA ATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTT CTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCC CAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAA TCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTT AAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTA GATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGT GTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATC CCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAA TCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCA CCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGT CCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACA TCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTT TCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCT TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC AATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTG TTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAA AAGCAGG



consensusID : consensus_9424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 355
fasta sequence
                              [TTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAGTGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC]

[+] EMBL CD184643             [TTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAGTGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC]
[-] EMBL CD139728             [                                                         ATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATT                                                                                                                       ]


>consensus_9424#1 TTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATC ATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAA TAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAA CAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTT GTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGA GTGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC



consensusID : consensus_9424#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence
                              [TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCCCTCGTGCCGAATTTTAAGCCGCCAC]

[-] EMBL CD077773             [TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCCCTCGTGCCGAATTTTAAGCCGCCAC]


>consensus_9424#2 TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAA GAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAG GACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATC GTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATT TGTATTCATCCCTCGTGCCGAATTTTAAGCCGCCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9424#0      GAAAAATGTATTTTACAAAATATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATT 60
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      CTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATA 120
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      ATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTT 180
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      CTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCC 240
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      CAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAA 300
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      TCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTT 360
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      AAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTA 420
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      GATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGT 480
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      GTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATC 540
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      CCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAA 600
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      TCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCA 660
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      CCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGT 720
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      CCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACA 780
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      TCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTT 840
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      ------------------------------------------------------------
                                                                                  

consensus_9424#0      TCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCT 900
consensus_9424#2      ----TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCT 56
consensus_9424#1      -----------------------------------------------------------T 1
                                                                                 *

consensus_9424#0      TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 960
consensus_9424#2      TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 116
consensus_9424#1      TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 61
                      ************************************************************

consensus_9424#0      TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 1020
consensus_9424#2      TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 176
consensus_9424#1      TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 121
                      ************************************************************

consensus_9424#0      AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 1080
consensus_9424#2      AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 236
consensus_9424#1      AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 181
                      ************************************************************

consensus_9424#0      AATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTG 1140
consensus_9424#2      AATTTGTATTCATCCCTCGTGCCGAATTTTAA-GCCGCCAC------------------- 276
consensus_9424#1      AATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTG 241
                      **************  *  * *       **  *  *  *                    

consensus_9424#0      TTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAA 1200
consensus_9424#2      ------------------------------------------------------------
consensus_9424#1      TTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAG 301
                                                                                  

consensus_9424#0      AAGCAGG----------------------------------------------- 1207
consensus_9424#2      ------------------------------------------------------
consensus_9424#1      TGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC 355
                                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)