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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 922 fasta sequence
[GGACAGCATCGCCGATGAACAAGAAGGGTCTGATGCAGACGTGAAGATGAGGTTTGGCAAAGCAAGGGCAGCATTCCTACAATCGAGGATTACCTGGAATTAAAAACAACCGTCACCCGAGACCGAAGCCATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATACTTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTCATAAACAGCTATCTACGCAGCATACTCAATGTTTGTTGACCGCATACTATCAGCAGCAGTGTACTGGGAGAGAGAACAAAGCAGCTTCCAACTGAATAGGGAATCAGGAGAAGACGCTGCAGGTGGATATGTCACATTGCAGAATTCATCAAACTGAATCTCGAGGCAAGCTCTAACTTGGAATTTTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAGACATTAAAAGAATGAATGGCAGCTGGAAGGGATTGTCCAGGACGTAGTTCGATTGAGAATGCTAGTTGGCGGCTTATGCTGCCGCACGAGGTTTAACGGGCGTAAGGAAGTTATAATTTTGTATGTGTGATTATTCAAAAAGTCAAAAGAGCTTCTATTTTTTCATAACCAGCCTTTGTATAACTTTTTCAATCTGTGTTAACTTATTGCTACATTCAAATACCTACTATGATTCATATTGATCAATGATTTCATTGCTCTTTGTCTCTAAATTGTCTGCATTTATATACCCCGTTTGTGTGTCTTGTAGCTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGTAAGTTGGAAATTAAATCTGTCATCCATTATCTATATGATGGAAGTTCAGTTCAGTTACTTTGTTGAAATTTATCGAGG]
[+] EMBL CD146026 [GGACAGCATCGCCGATGAACAAGAAGGGTCTGATGCAGACGTGAAGATGAGGTTTGGCAAAGCAAGGGCAGCATTCCTACAATCGAGGATTACCTGGAATTAAAAACAACCGTCACCCGAGACCGAAGCCATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATACTTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTCATAAACAGCTATCTACGCAGCATACTCAATG ]
[+] EMBL CD133097 [ CATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATACTTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTCATAAACAGCTATCTACGCAGCATACTCAATGTTTGTTGACCGCATACTATCAGCAGCAGTGTACTGGGAGAGAGAACAAAGCAGCTTCCAACTGAATAGGGAATCAGGAGAAGACGCTGCAGGTGGATATGTCACATTGCAGAATTCATCAAACTGAATCTCGAGGCAAGCTCTAACTTGGAATTTTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAGACATTAAAAGAATGAATGGCAGCTGG ]
[+] EMBL CD167866 [ CTGCAAGTGGATATGTCACATTGCAGAATTCATCAAATTGAATCTCGAGGCAAGCTCTAACTTGGAATTTTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAGACATTAAAAGAATGAATGGCAGCTGGAAGGGATTGTCCAGGACGTAGTTCGATTGAGAATGCTAGTTGGCGGCTTATGCTGCCGCACGAGGTTTAACGGGCGTAAGGAAGTTATAATTTTGTATGTGTGATTATTCAAAAAGTCAAAAGAGCTTCTATTTTTTCATAACCAGCCTTTGTATAACTTTTTCAATCTGTGTTAACTTATTGCTACATTCAAATACCTACTATGATTCATATTGATCAATGATTTCATTGCTCTTTGTCTCTAAATTGTCTGCATTTATATACCCCGTTTGTGTGTCTTGTAGCTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGTAAGTTGGAAATTAAATCTGTCATCCATTATCTATATGATGGAAGTTCAGTTCAGTTACTTTGTTGAAATTTATCGAGG]
consensusID : consensus_9426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 751 fasta sequence
[CAGTCGTTTGGATTCCTGTGTGTGGGGTAATTCGATGACGGACTGTTGCCAGTGGAAATCTCGTACAATAGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAACAAGTGAGGCTATGAAATAAATGTACACTGCCAATGTGACGACCTGTGTGTAAACCAATGGGATGCAAACAAGCGCTCCAGCTATTGTACGAGATTTCCACTGGCAACAGTCCGTCATCGAATTACCCCACACACAGGAATCCAAACGACTGGCTTCTCGCCCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCATTTGACTCGAAATAGTACGATAAATATTCCTACTAGGTTGATCCCAACTGAGAGCGTTGTTCCCAGCGAAACTGATAATACGTCGAGAATGAATGTTTCGGATGATCATACGGCTATGGATACTGGGTTATTAACTGTTACTCCTAATACTCCCGCAGTAAACCGTCTTCTTCATGAA]
[+] EMBL CD125710 [CAGTCGTTTGGATTCCTGTGTGTGGGGTAATTCGATGACGGACTGTTGCCAGTGGAAATCTCGTACAATAGCTGGAGCGCTTGTTTTCATTCCATCAGCAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAAACAGTGAGGCTATGAAATAA ]
[-] EMBL CD112131 [ ACAATAGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAACAAGTGAGGCTATGAAATAAATGTACACTGCCAATGTGACGACCTGTGTGTAAACCAATGGGATGC ]
[+] EMBL CD135467 [ TAGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCACGAACTATCGATTATAAACTGACGACCAACAAGTGAGGC ]
[-] EMBL CD146693 [ ATATTTTCGTCATTTTCCCCAATAGGATTAACCAGTGTTTCGGCAA CTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAACAAGTGAGGCTATGAAATAAATGTACACTGCCAATGTGACGACCTGTGTGTAAACCAATGGGATGCAAACAAGCGCTCCAGCTATTGTACGAGATTTCCACTGGCAACAGTCCGTCATCGAATTACCCCACACACAGGAATCCAAACGACTGGCTTCTCGCCCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCATTTGACTCGAAATAGTACGATAAATATTCCTACTAGGTTGATCCCAACTGAGAGCGTTGTTCCCAGCGAAACTGATAATACGTCGAGAATGAATGTTTCGGATGATCATACGGCTATGGATACTGGGTTATTAACTGTTACTCCTAATACTCCCGCAGTAAACCGTCTTCTTCATGAA]
[+] EMBL CD062595 [ GGCTTCTCGCCCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCATTTGACTCGAAATAGTACGATAAATATTCCTACTAGGTTGATCCCgatggggt ]
consensusID : consensus_9426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TCTTTATTTCTGTGGAGAAAATTTAACAGAAAACTAACTTAAATCTACACAACAACGCAACAGTACTTAATACAAGCAGTTAAGATTATTCTAATTGAAAAAATTATATTGCAGATCAAATATGGCCGGATATAGGAAACACCAAAGAGATTGATGCCATGGAAAATGAATATCAACTTGTTAAGGTAAAGTTAGTTTAATTAAATAACGAAAGAATTACACACCAAAAATTAGCTTATTCATTAGATAAATAGAATTGACATTTCCAACATAATTGTTTACATACAGTAGCAAGCAATGTGGTGAATCACGTGGAACAAAATTGTTAAGAAAATAAATTAGCTGATTAATCTACCACTATTGATATTGAAGGGGTACTACAAACTTTTTATATTGCTCTATTTAAATATGAACGCGTTAAACAAACTCACTGAAGAAAAACAAATAAATGATTCACTATTTGCTGATGCTTAGAAGCACAGGCAGATTTTCTAACAAGATGAGTTTACAATATTTCCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGATATAGAGATCTTGTGAATTTGNTCGCGAACTATCGATTANTAACT]
[+] EMBL CD129950 [TCTTTATTTCTGTGGAGAAAATTTAACAGAAAACTAACTTAAATCTACACAACAACGCAACAGTACTTAATACAAGCAGTTAAGATTATTCTAATTGAAAAAATTATATTGCAGATCAAATATGGCCGGATATAGGAAACACCAAAGAGATTGATGCCATGGAAAATGAATATCAACTTGTTAAGGTAAAGTTAGTTTAATTAAATAACGAAAGAATTACACACCAAAAATTAGCTTATTCATTAGATAAATAGAATTGACATTTCCAACATAATTGTTTACATACAGTAGCAAGCAATGTGGTGAATCACGTGGAACAAAATTGTTAAGAAAATAAATTAGCTGATTAATCTACCACTATTGATATTGAAGGGGTACTACAAACTTTTTATATTGCTCTATTTAAATATGAACGCGTTAAACAAACTCACTGAAGAAAAACAAATAAATGATTCACTATTTGCTGATGCTTAGAAGCACAGGCAGATTTTCTAACAAGATGAGTTTACAATATTTCCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGATATAGAGATCTTGTGAATTTGNTCGCGAACTATCGATTANTAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9426#1 ------------------------------------------------------------
consensus_9426#2 ------------------------------------------------------------
consensus_9426#0 GGACAGCATCGCCGATGAACAAGAAGGGTCTGATGCAGACGTGAAGATGAGGTTTGGCAA 60
consensus_9426#1 ------------------------------------------------------------
consensus_9426#2 ------------------------------------------------------------
consensus_9426#0 AGCAAGGGCAGCATTCCTACAATCGAGGATTACCTGGAATTAAAAACAACCGTCACCCGA 120
consensus_9426#1 --------CAGTCGTTTGGATTCCTGTGTGTGGGGTAATTCGATGACGGACTGTTGCCAG 52
consensus_9426#2 --------------------------------------------TCTTTATTTCTGT-GG 15
consensus_9426#0 GACCGAAGCCATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATAC 180
**
consensus_9426#1 T-GGAAATCTCGTACAAT--AGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCAT 109
consensus_9426#2 A-GAAAATTTAACAGAA---AACTAACTTAAATCTACACAACAACGCAACAGTACTTAAT 71
consensus_9426#0 TTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTC-ATAAACAGCTATCTAC 239
* * * * ** * * * * **** *
consensus_9426#1 CCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCC 169
consensus_9426#2 ACAAG----CAGTTAAGAT-TAT--TCTAATTGAAAAAATTATATTG----------CAG 114
consensus_9426#0 GCAGC---ATACTCAATGTTTGTTGACCGCATACTATCAGCAGCAGTGT---ACTGGGAG 293
** * * ** * * * * * * * *
consensus_9426#1 ATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGG 229
consensus_9426#2 ATCAAATATGGCCGGATATAGGAAACACCAAAGAG----ATTGATGCCATGGAA--AATG 168
consensus_9426#0 AGAGAACAAAGCAGCTTCCAACTGAATAGGGAATCAGGAGAAGACGCTGCAGGT---GGA 350
* * * * * * * * *
consensus_9426#1 AACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAAC 289
consensus_9426#2 AATATCAACTTGTTAAGGTAAAGTTAGT-TTAATTAAATAACGAAAGA---ATTACACAC 224
consensus_9426#0 TATGTCACATTGCAGAATTCATCAAACT--GAATCTCGAGGCAAGCTCTAACTTGGAATT 408
* * * * * * *** * * ** *
consensus_9426#1 TGACGACCAACAAGTGAGGCTATGAAATA-AATGTACACTGCCAATGTGACGACCTGTGT 348
consensus_9426#2 CAAAAATTAGCTTATTCATTAGATAAATAGAATTGACATTTCCAACATAATTGTTTACAT 284
consensus_9426#0 TTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAG 468
* * * *** * * *
consensus_9426#1 GTAAACCAATGGGATGCAAACAAGCGCTCCAGCTATTGTACGAGATTT---CCACTGGCA 405
consensus_9426#2 A-----CAGTAGCAAGCAATGTGGTGAATCA--CGTGGAACAAAATTG---TTAA----G 330
consensus_9426#0 ACA--TTAAAAGAATGAATGGCAGC-TGGAAGGGATTGTCCAGGACGTAGTTCGATTGAG 525
* * * * * * * * * * *
consensus_9426#1 ACAGTCCGTCATCGAATTACCCCACACACAGGAATCCAAACGACTGGC-----TTCTCGC 460
consensus_9426#2 AAAATAAATTAGCTGATTAATCTACCACTATTGATATTGAAGGGGTAC-----TACAAAC 385
consensus_9426#0 AATGCTAGTTGGCGGCTTATGCTGCCGCACGAGGTTTAACGGGCGTAAGGAAGTTATAAT 585
* * * *** * * * * *
consensus_9426#1 CCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCT 520
consensus_9426#2 TTTTTATATTGCTCTATTTA-AATATGAACGCGTTAAACAAACTCACTGAAGAAAAACAA 444
consensus_9426#0 TTTGTATGTGTGATTATTCAAAAAGTCAAAAGAGCTTCTATTTTT-TCATAACCAGCCTT 644
* * * ** * ** *
consensus_9426#1 GCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCAT---TTG 577
consensus_9426#2 A---TAAATGATTCACTATTTGCTGATGCTTAGAA----GCACAGGCAGATTTT---CTA 494
consensus_9426#0 TGTATAACTTTTTCAATCTGTGTTAACTTATTGCTACATTCAAATACCTACTATGATTCA 704
** * *** * ** * * ** * *
consensus_9426#1 ACTCGA--AATAGTACGATAAATATTC-CTACTAGGTTGATCCCAACTGAGAGCGTTGTT 634
consensus_9426#2 A--CAA--GATGAGTTTACAA-TATTT-CCTTTAA--CAATCCCA--TATACACTATGAA 544
consensus_9426#0 TATTGATCAATGATTTCATTGCTCTTTGTCTCTAAATTGTCTGCATTTATATACCCCGTT 764
* ** * * ** ** ** * * *
consensus_9426#1 CCCAGCGAAACTGATAATACGTCGAGAATGAATGT--TTCGGATGATCATACGGCTATGG 692
consensus_9426#2 CTCTAGGAACATGAAGAAA----GGATATAGAGAT--CTTG--TGA--ATTTGNTCGCGA 594
consensus_9426#0 TGTGTGTCTTGTAGCTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCA 824
* * * * * *
consensus_9426#1 ATACTGGGTTATTAACTGTTACTCCTAATACTCCCGCAGTAAACCGTCTTCTTCATGAA- 751
consensus_9426#2 ACTATCGATTANTAACT------------------------------------------- 611
consensus_9426#0 CTAATTGGTCATTCACAAGTAAGTTGGAAATTAAATCTGTCATCCATTATCTATATGATG 884
* * * * * **
consensus_9426#1 --------------------------------------
consensus_9426#2 --------------------------------------
consensus_9426#0 GAAGTTCAGTTCAGTTACTTTGTTGAAATTTATCGAGG 922
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||