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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1154 fasta sequence
[CTCGAGCCAANATTCGGCACGAGGACAGATGTTGATTATAGTTTTGAAAATAAAGATTCTGAAAATCGTTTCACTCAGATTATTATAGATTTCGACCATTTGGATGACTACCAAGAAGTATTTCAAGATACTGATGTGGGTTTTTGTGCTCTTGGGACAACCTTGAAAAAGTCAGGGAAGGAAAAAATGAGGATAATAGACCATGACTATGTAATTCATATTGCTAAGTTAAGTTCTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTCAAAAGCAGCAAATAAAACCAGTATTTTTTTTTATCTTCAACTTAAAGGGGAAACAGAATCAGATTTAATATCACTTAATTTATTTCCTAAATGTCTTGCAATCTA--TCGTCCAGCTACATTATTATGTTCACGTGTTGAATCACGACTAACGGAAAGAGCTTTTCAAATTTTACTGAAACCTTTCGCATATCTTGCACCTACATTATTGACAACACCAATTGATATCCTTGCAAAGGCTATGACCAATGCTCCATTTAGTTCCAAATTAAAAACTGATTTATCTGTACAACAAG-AAAAATCACTACCTAAAAATGTGTATATTTTCGAAAATTCTGAT-ATTTTCTTACTTGCATCGGAAAACAAGGATATATAATTATTTCATTGGGGTTGTGCTCTAACTTTGAAGTAAGTTCTTATTCCATTTTGCCGGTATTTTACATCATGCCATTGACACTTTATTCAATTCATGAATCCGTGGATTTGTTTTGCTCATCTTAATATCTTTCCAGTTGGATAGTATTCATAATTATCACATATTGATTATAAATTACATTCAAATTCACAAACTACTTTGCACGTGGTCACTACGATACAGTTGTTTTTACATTCTTACTTTTTTTCGTTCACAAATATTCTGCGTTCATTATGTTTGCTAAATTGGTTTGTTTTTCATTATAATAGTTTTATTGACTGAAACATTTCTTGTTATAGACCAACAACTACCTGTCAGTCTTTCTGACGCTCTTGTTTTCTTATCATTTTTGTTACACATTATTTACACGATTTATAATCAAACCTGTACATTTAGTAGTTTTTTTAAAAAAATACGAAACTGTAATACGGTTTGTTGGTTTTTGTTTACGTAAAAATAAATTTCAACTT]
[+] EMBL CD079645 [CTCGAGCCAANATTCGGCACGAGGACAGATGTTGATTATAGTTTTGAAAATAAAGATTCTGAAAATCGTTTCACTCAGATTATTATAGATTTCGACCATTTGGATGACTACCAAGAAGTATTTCAAGATACTGATGTGGGTTTTTGTGCTCTTGGGACAACCTTGAAAAAGTCAGGGAAGGAAAAAATGAGGATAATAGACCATGACTATGTAATTCATATTGCTAAGTTAAGTTCTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTCAAAAGCAGCAAATAAAACCAGTATTTTTTTTTATCTTCAACTTAAAGGGGAAACAGAATCAGATTTAATATCACTTAATTTATTTCCTAAATGTCTTGCAATCTA TCGTCCAGCTACATTATTATGTTCACGTGTTGAATCACGACTAACGGAAAGAGCTTTTCAAATTTTACTGAAACCTTTCGCATATCTTGCACCTACATTATTGACAACACCAATTGATATCCTTGCAAAGGCTATGACCAATGCTCCATTTAGTTCCAAATTAAAAACTGATTTATCTGTACAACAAG AAAAATCACTACCTAAAAATGTGTATATTTTCGAAAATTCTGAT ATTTTCTTACTTGCATCGGANAACAAGGATATATAATTATTTCATTGNGGTTGTGCTCTAACTnnt ]
[+] EMBL CD147726 [ GGAAACAGAATCAGATTTAATATCACTTAATTTATTTCCTAAATGTCTTGCAATCTA TCGTCCAGCTACATTATTATGTTCACGTGTTGAATCACGACTAACGGAAAGAGCTTTTCAAATTTTACTGAAACCTTTCGCATATCTTGCACCTACATTATTGACAACACCAATTGATATCCTTGCAAAGGCTATGACCAATGCTCCATTTAGTTCCAAATTAAAAACTGATTTATCTGTACAACAAG AAAAATCACTACCTAAAAATGTGTATATTTTCGAAAATTCTGAT ATTTTCTTACTTGCATCGGAAAACAAGGATATATAATTATTTCATTGGGGTTGTGCTCTAACTTTGAAGTAAGTTCTTATTCCATTTTGCCGGTATTTTACATCATGCCATTGACACTTTATTCAATTCATGAATCCGTGGATTTGTTTTGCTCATCTTAATATCTTTCCAGTTGGATAGTATTCATAATTATCACATATTGATTATAA ]
[-] EMBL CD069275 [ ACTTAATTTATGTCCTAAATGTCTTGCAATCTA TCGTCCAGCTACATTATTATGTCCACGTGTTGAATCACGACTAACGGAAAGAGCTTTTCAAATTTTACTGAAACCTTTCGCATATCTTGCACCTACATTATTGACAACACCAATTGATATCCTTGCAAAGGCTATGACCAATGCTCCATTTAGTTCCAAATTAAAAACTGATTTATCTGTACAACAAG AAAAATCACTACCTAAAAATGTGTATATTTTCGAAAATTCTGAT ATTTTCTTACTTGCATCGGAATACAAGGATATATAATTATTTCATTGGGCTTGTGCTCTAACTTTGAAGTAAGTTCTTATTCCATTTTGCCGGTATTTTACATCATGCCATTGACACTTTATTCAATTCATGAATCCGTGGATTTGTTTTGCTCATCTTAATATATTTCCAGTTGGATAGTACTCATAATTATCACATATTG TTATAta ]
[+] EMBL AI381065 [ CCTAAATGTCTTGCAATCTACGTCGTCCAGCTACATTATTATGTTCACGTGTTGAATCACGACTAACGGAAAGAGCTTTTCAAATTTTACTGAAACCTTTCGCATATCTTGCACCTACATTATTGACAACACCAATTGATATCCTTGCAAAGGCTATGACCAATGCTCCATTTAGTTCCAAATTAAAAACTGATTTATCTGTACAACAAGAAAAAATCACTACCTAAAAATGTGTATATTTTCGAAAA TCTGATAATTTTCTTACTTGCA ]
[-] EMBL CD073907 [ ATCC TGCAAAGGCTATGACCAATGCTCCATTTAGTTCCAAATTAAAAACTGATTTATCTGTACAACAAG AAAAATCACTACCTAAAAATGTGTATATTTTCGAAAATTCTGAT ATTTTCTTACTTGCATCGGAAAACAAGGATATATAATTATTTCATTGGGGTTGTGCTCTAACTTTGAAGTAAGTTCTTATTCCATTTTGCCGGTATTTTACATCATGCCATTGACACTTTATTCAATTCATGAATCCGTGGATTTGTTTTGCTCATCTTAATATCTTTCCAGTTGGATAGTATTCATAATTATCACATATTGATTATAACTTACATTCAAATTCACAAACTACTTTGCACGTGGTCACTACGATACAGTTGTTTTTACATTCTTACTTTTTTTCGTTCACAAATATTCTGCGTTCATTATGTTTGCTAAATTGGTTTGTTTTTCATTATAATAGTTTTATTGACTGAAACATTTCTTGTTATAGACCAACAACTACCTGTCAGTCTTTCTGACGCTCTTGTTTTCTTATCATTTTTGTTACACATTATTTACACGATTTATAATCAAACCTGTACATTTAGTAGTTTTTTTAAAAAAATACGAAACTGTAATACGGTTTGTTGGTTTTTGTTTACGTAAAAATAAATTTCAACTT]
consensusID : consensus_9428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 820 fasta sequence
[AAATTCTAACGTCCGGCTTCACGAATCTGTTTTAAACTTACAGGCGGCAGACGGAAGGTCAATCGCCACATATGGTAAAAGGTACATCTACCTTAACGTGAGTTTACGCAAACCCATCCACTGGATTCTCGTTGCTGCAGCTGTTTCTATGCCAATCGTTGGTATAGACCTGCTACAACACTACAATCTACTGATTGACATACGCAAACGAAGTATCTGATGTTCTTGGGTACGTTAGTTAATTATGTATTGAGATTGTACTATCATCGCTTGTTCTGAATCACTAAACTGTACTAATACTGGTTGAAGACCTTGGGAATCCCTTGCTGTTAAAATAATATACCGAAATATTATATGGCTGGTTTGCGAGCTTTCATTGTCGGTAGTACTGGCGAAGCAGGAAAAGCATTAATCAAAGCCTTAGCTGACGACACAAGATACAGTTCTATCAAATTAATTCAAAGGCGTAAAACAGATGTTGATTATAGTTTTGAAAATAAAGATTCTGAAAATCGTTTCACTCAGATTATTATAGATTTCGACCATTTGGATGACTACCAAGAAGTATTTCAAGATACTGATGTGGGTTTTTGTGCTCTTGGGACAACCTTGAAAAAGTCAGGGAAGGAAAAAATGAGGATAATAGACCATGACTATGTAATTCATATTGCTAAGTTAAGTTCTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTCAAAAGCAGCAAATAAAACCAGTATTTTTTTTTATCTTCAACTTAAAGGGGAAACAGAGTCAGATTTAATATCACTTAATTTATTTCCTAAATGTCTTGCAA]
[+] EMBL AI976734 [AAATTCTAACGTCCGGCTTCACGAATCTGTTTTAAACTTACAGGCGGCAGACGGAAGGTCAATCGCCACATATGGTAAAAGGTACATCTACCTTAACGTGAGTTTACGCAAACCCATCCACTGGATTCTCGTTGCTGCAGCTGTTTCTATGCCAATCGTTGGTATAGACCTGCTACAACACTACAATCTACTGATTGACATACGCAAACGAAGTATCTGATGTTCTTGGGTACGTTAGTTAATTATGTATTGAGATTGTACTATCATCGCTTGTTCTGAATCACTAAACTGTACTAATACTGGTTGAAGACCTTGGGAATCCCTTGCTGTTAAAATAATATACCGAAATATTATATGGCTGGTTTGCGAGCTTTCATTGTCGGTAGTACTGGCGAAACAGGAAAAGCATTAATCAAAGCCTTAGCTGACGACACAAGATACAGTTCTATCAAATTAATTCAAA ]
[+] EMBL CD201376 [ gaattcaacAGTATCTGATGTTCTTGGGTACGTTAGTTAATTGTGTATTAAGATTGTACTATCATCACTTGTCCTGAATCGCTCAACTGTACTAATACTGGTTGAAGACCTTGGGAGTCCCTTGCTGTCAAGATAATATA CGAAATATTATATGGCTGGTTTGCGAGCTTTCATTGTCGGTAGTACTGGCGAAGCAGGAAAAGCATTAATCAAAGCCTTAGCTGACGACACAAGATACAGTTCTATCAAATTAATTCAAAGGCGTAAAACAGATGTTGATTATAGTTTTGAAAATAAAGATTCTGAAAATCGTTTCACTCAGATTATTATAGATTTCGACCATTTGGATGACTACCGAGAAGTATTTCAAGATACTGATGTGGGTTTTTGTGCTCTTGGGACAACCTTGAAAAAGTCAGGGAAGGAAAAAATGAGGATAATAGACCATGACTATGTAATTCATATTGCTAAGTTAAGTTCTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTCAAAAGCAGCAAATAAAACCAGTATTTTTTTTTATCTTCAACTTANAGGGG ]
[-] EMBL CD185045 [ AGCTTTCATGCTCGGTAGTACTGGCGAAGCAGGAAAAGCATTAATCAAAGCCTTAGCTGACGACACAAGATACAGTTCTATCAAATTAATTCAAAGGCGTAAAACAGATGTTGATTATAGTTTTGAAAATAAAGATTCTGAAAATCGTTTCACTCAGATTATTATAGGTTTCGACCATTTGGATGACTACCAAGAAGTATTTCAAGATACTGATGTGGGTTTTTGTGCTCTTGGGACAACCTTGAAAAAGTCAGGGAAGGAAAAAATGAGGATAATAGACCATGACTATGTAATTCATATTGCTAAGTTAAGTTCTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTCAAAAGCAGCAAATAAAACCAGTATTTTTTTTTATCTTCAACTTAAAGGGGAAACAGAGTCAGATTTAATATCACTTAATTTATTTCCTAAATGTCTTGCAA]
[-] EMBL CD185054 [ CTGGCGAAGCAGGAAAAGCATTAATCAAAGCCTTAGCTGACGACACAAGATACAGTTCTATCAAATTAATTCAAAGGCGTAAAACAGATGTTGATTATAGTTTTGAAAATAAAGATTCTGAAAATCGTTTCACTCAGATTATTATAGATTTCGACCATTTGGATGACTACCAAGAAGTATTTCAAGATACTGATGTGGGTTTTTGTGCTCTTGGGACAACCTTGAAAAAGTCAGGGAAGGAAAAAATGAGGATAATAGACCATGACTATGTAATTCATATTGCTAAGTTAAGTTCTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTCAAAAGCAGCAAATAAAACCAGTA TTTTTTTTATCTTCAACTTAAAGGGGAAACAGAATCAGATTTAATATCACTTAATTTATTTCCTAAATGTCTTGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9428#0 CTCGAGCCAANATTCGGCACGAGGACAGATGTTGATTATAGTTTTGAAAATAAAGATTCT 60
consensus_9428#1 ------------------------------------------------------------
consensus_9428#0 GAAAATCGTTTCACTCAGATTATTATAGATTTCGACCATTTGGATGACTACCAAGAAGTA 120
consensus_9428#1 --------------------------------------------AAATTCTAACGTCCGG 16
* * * *
consensus_9428#0 TTTCAAGATACTGATGTGGGTTTTTGTGCTCTTGGGACAACCTTGAAAAAGTCAGGGAAG 180
consensus_9428#1 CTTCACGAATCTGTTTTAAACTTACAGGCGGCAGACGGAAGGTC--AATCGCCACATATG 74
**** ** *** * * ** ** * ** * ** * ** * *
consensus_9428#0 G-AAAAAATGAGGATAATAGACCATGA--CTATGTAATTCATATTGCTAAGTTA--AGTT 235
consensus_9428#1 GTAAAAGGTACATCTACCTTAACGTGAGTTTACGCAAACCCATCCACTGGATTCTCGTTG 134
* **** * ** * * *** ** * ** * ** ** *
consensus_9428#0 CTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTCAAAAGCAGCAAATAAAACCAGTA 295
consensus_9428#1 CTGCAGCTGTTTCTATGCCAATCGTTGGTAT-AGACCTGCTACAACAC-TACAATC--TA 190
******* * * ** * * * * * ** * ** ** ** ** * **
consensus_9428#0 TTTTTTTTTATCTTCAACTTAAAGGGGAAACAGAATCAGATTTAATATCACTTAATT-TA 354
consensus_9428#1 CTGATTGACATACGCAAACGAAGTATCTGATGTTCTTGGGT---ACGTTAGTTAATTATG 247
* ** ** *** ** * * * * * * * ****** *
consensus_9428#0 TTTCCTAAATGTCTTGCAATCTATCGTCCAGCTACATTATTATGTTCACGTGTTGAATCA 414
consensus_9428#1 TATTGAGATTGTACTATCATCGCTTGTTCTGAATCACTAAACTGTACTAATACTGGTTGA 307
* * * *** * *** * ** * * ** ** *** * * ** * *
consensus_9428#0 CGACTAACGGAAAGA---GCTTTTCAAAT--TTTACTGAAACCTTTCGCA--TATCTTGC 467
consensus_9428#1 AGACCTTGGGAATCCCTTGCTGTTAAAATAATATACCGAAATATTATATGGCTGGTTTGC 367
*** **** *** ** **** * *** **** ** * ****
consensus_9428#0 A--CCTACATTATTGACAACACCAATTGATATCCTTGCAAAGGCTATGACCAATGCTCCA 525
consensus_9428#1 GAGCTTTCATTGTCGGTAGTACTGGCGAAG----CAGGAAAAGCATTAATCAAAGCCTTA 423
* * **** * * * ** * * *** ** * * *** ** *
consensus_9428#0 TTTAGTTCCAAATTAAAAACTGATTTATCTGTACAACAAGAAAAATCACTACCTAAAAAT 585
consensus_9428#1 GCTGACGACACA--AGATACAGTTCTATCAAATTAATTCAAAGGCGTAAAACA-GATGTT 480
* ** * * * ** * * **** ** ** * ** * *
consensus_9428#0 GTGTATATTTTCGAAAAT------TCTGATATTT-TCTTACTTG---CATCGGAAAACAA 635
consensus_9428#1 GATTATAGTTTTGAAAATAAAGATTCTGAAAATCGTTTCACTCAGATTATTATAGATTTC 540
* **** *** ****** ***** * * * * *** ** * *
consensus_9428#0 GGATATATAATTATTTCATTGGGGTTGTGCTCTAACTTTGAAGTAAGTTCTTATTCCATT 695
consensus_9428#1 GACCATTTGGATGACTACCAAGAAGTATTTCAAGATACTGATGTGGGTTTTTGTGCTCTT 600
* ** * * * * * * * *** ** *** ** * * **
consensus_9428#0 TTGCCGGTATTTTACA--TCATGCCATTGACACTTTATT----CAATTCATGAATCCGTG 749
consensus_9428#1 GGGACAACCTTGAAAAAGTCAGGGAAGGAAAAAATGAGGATAATAGACCATGACTATGTA 660
* * ** * * *** * * * * * * * ***** * **
consensus_9428#0 GATTTGTTTTGCTCATCTTAATATCTTT-CCAGTTGGATAGTATTCATAATTATCACATA 808
consensus_9428#1 -ATTCATATTGCTAAGTTAAGTTCTGCAGCCGGCTGTAAAGAATTTCATCTTGTCAGTTC 719
*** * ***** * * * * ** * ** * ** *** ** *** *
consensus_9428#0 TTGATTATAAATTACATTCAAATTCACAAACTACTTTGCACGTGGTCACTACGATACAGT 868
consensus_9428#1 AAAAGCAGCAAATAAAACCAGTATTTTTTTTTATCTTCAACTTAAAGGGGA-AACAGAGT 778
* * ** ** * ** * ** ** ** * * * * ***
consensus_9428#0 TGTTTTTACATTCTTACTTTTTTTCGTTCACAAATATTCTGCGTTCATTATGTTTGCTAA 928
consensus_9428#1 CAGATTTA--ATATCACTTAATTTATTTCCTAAATGTCTTGCAA---------------- 820
**** * * **** *** *** **** * ***
consensus_9428#0 ATTGGTTTGTTTTTCATTATAATAGTTTTATTGACTGAAACATTTCTTGTTATAGACCAA 988
consensus_9428#1 ------------------------------------------------------------
consensus_9428#0 CAACTACCTGTCAGTCTTTCTGACGCTCTTGTTTTCTTATCATTTTTGTTACACATTATT 1048
consensus_9428#1 ------------------------------------------------------------
consensus_9428#0 TACACGATTTATAATCAAACCTGTACATTTAGTAGTTTTTTTAAAAAAATACGAAACTGT 1108
consensus_9428#1 ------------------------------------------------------------
consensus_9428#0 AATACGGTTTGTTGGTTTTTGTTTACGTAAAAATAAATTTCAACTT 1154
consensus_9428#1 ----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||