These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 727 fasta sequence [CCTCCATCAGTGGATAATACTATTAGATCGTTGCCCCACTAAACTTACCTCTACATCGGCGCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACACATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTACTAATTTTGGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CD141791 [CCTCCATCAGTGGATAATACTATTAGATCGTTGCCCCACTAAACTTACCTCTACATCGGCGCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACACATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATAC ] [+] EMBL CD082871 [ TAGATCGTTGCCCCACTAAACTTACCTCTACATCGGCGCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACACATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCANACAGCAGTAATAGGAATGATGATTGGAA ] [-] EMBL CD144944 [ GAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGT ] [-] EMBL CD076457 [ CATATCGCTCTCAGAACGGTTCAAACTTCATG TTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCCCATATGGATTCCTACCCGGACTCCCCATTGCCCCAATATTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGGTTCGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTAAATCGGTTTGGGATGCGGCGGGATAGCAGGTTTTGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCCCTTTTACCCAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTTTAATAATTTACTAA ] [-] EMBL CD075777 [ CTCTCAGAACGGTTCAAACTTCATG TTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTACT ] [-] EMBL AI394998 [ tGGCCACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACTCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTACTAATTTTGGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [TGGTACGAGGAGCTCTCAGAACGGTTCAAACTTCATGTTTTTTGTAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC] [+] EMBL CD082161 [TGGTACGAGGAGCTCTCAGAACGGTTCAAACTTCATGTTTTTTGTAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC] consensusID : consensus_9432#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [CGTTACTACAATTTCCTACTAATCGGGATATCACAAAAATATATTTATTGTTAACTTTCAACCGAATGCTCAATTTATTTGAAACTATCCAGTCTTGGCATTGATACCTACAAATCCATATAATCACTCAGTAATTCTTTGGTTTTATAATTTTTTTAAAAATTAAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC] [+] EMBL CD078617 [CGTTACTACAATTTCCTACTAATCGGGATATCACAAAAATATATTTATTGTTAACTTTCAACCGAATGCTCAATTTATTTGAAACTATCCAGTCTTGGCATTGATACCTACAAATCCATATAATCACTCAGTAATTCTTTGGTTTTATAATTTTTTTAAAAATTAAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC] consensusID : consensus_9432#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [TAATAACGATATGGGATGCGGCGGGATAACAGGTTTCGCCAATACAATTGGGCCAATGCAAACAGCAGTAATAGGAATGATGACTGGAACTGTAGCAACTATATGCATATAATCAGCTTAGAAGTAGCAAATATACACAGAAATAGATAATGGATGAATTCACTAATTTTGTGATCATTAGTATGGGGACCCAATAATCTAATAAGANTGGTAAAAGAAAAAAAAAAAACTAAAA] [-] EMBL AI394848 [TAATAACGATATGGGATGCGGCGGGATAACAGGTTTCGCCAATACAATTGGGCCAATGCAAACAGCAGTAATAGGAATGATGACTGGAACTGTAGCAACTATATGCATATAATCAGCTTAGAAGTAGCAAATATACACAGAAATAGATAATGGATGAATTCACTAATTTTGTGATCATTAGTATGGGGACCCAATAATCTAATAAGANTGGTAAAAGAAAAAAAAAAAACTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9432#0 CCTCCATCAGTGGATAATACTATTAGATCGTTGCCCCACTAAACTTACCTCTACATCGGC 60 consensus_9432#1 ------------------------------------------------------------ consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 ------------------------------------------------------------ consensus_9432#0 GCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACA 120 consensus_9432#1 ------------------------------------------------------------ consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 ------------------------------------------------------------ consensus_9432#0 CATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGA 180 consensus_9432#1 ------------------------------------------------------------ consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 ------------------------------------------------------------ consensus_9432#0 GCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGT 240 consensus_9432#1 -----------------------------------TGGTACGAGGAGCTCTCAGAACGGT 25 consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 ------------------------------------------------------------ consensus_9432#0 TCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAA 300 consensus_9432#1 TCAAACTTCATGTTTTTT-GTAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAA 84 consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 ------------------------------------------------------------ consensus_9432#0 ACCTAGAACTTTAAGGTGTT--TAACCAGAAGATCAGTTAAATTCGCCACATATGGATTC 358 consensus_9432#1 ACCTAGAACTTTAAGGTGTT--TAACCAGAAGATCAGTTAAATTCGCCACATATGGATTC 142 consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 ---CGTTACTACAATTTCCTACTAATCGGGATATCACAAAAATATATTTATTGTTAACTT 57 consensus_9432#0 CTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGAC 418 consensus_9432#1 CTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGAC 202 consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 TCAACCGAATGCTCAATTTATTTGAAACTATCCAGTCTTGGCATTGATACCTACAAATCC 117 consensus_9432#0 GAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACC--AGCTTCGTGTAG 476 consensus_9432#1 GAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACC--AGCTTCGTGTAG 260 consensus_9432#3 ------------------------------------------------------------ consensus_9432#2 ATATAATCACTCAGTAATTCTTTGGTTTTATAATTTTTTTAAAAATTAAGCTTCGTGTAG 177 consensus_9432#0 ATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTG 536 consensus_9432#1 ATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTG 320 consensus_9432#3 ----------TAATAACGATATGGGATGCGGCGGGATAACAGGTTTCGCCAATACAATTG 50 consensus_9432#2 ATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTG 237 * *** ** * ***************** ************* ** *** consensus_9432#0 GGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGC-TGT 595 consensus_9432#1 GGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGC-TGT 379 consensus_9432#3 GGCCAATGCAAACAGCAGTAATAGGAATGATGACTGGAACTGTAGCAACTATATGCATAT 110 consensus_9432#2 GGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGC-TGT 296 ********************************* ************* ** * *** * * consensus_9432#0 AATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTT 655 consensus_9432#1 AATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTT 439 consensus_9432#3 AATCAGCTTAGAAGTAGCAAATATACACAGAAATAGATAATGGATGAATTCACTAATTTT 170 consensus_9432#2 AATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTT 356 ****** *** ******** * **************** ****** *** **** ** consensus_9432#0 GTGTTCATTAGTTTCTTT-TCTAATAATCTACTAATTTTGGTAGAAAAAAAAAAAAAAAA 714 consensus_9432#1 GTGTTCATTAGTTTCTTT-TCTAATAATCTAC---------------------------- 470 consensus_9432#3 GTGATCATTAGTATGGGGACCCAATAATCTAATAAGANTGGTAAAAGAAAAAAAAAAAAC 230 consensus_9432#2 GTGTTCATTAGTTTCTTT-TCTAATAATCTAC---------------------------- 387 *** ******** * * ********* consensus_9432#0 AAAAAAAAAAAAA 727 consensus_9432#1 ------------- consensus_9432#3 TAAAA-------- 235 consensus_9432#2 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||