These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 624 fasta sequence [CTCTCACGATCCTTCC-CTCTCTCACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCA-GGCACATATACCAATTATCTGAACCTGCGGTTCCT-CTC--GTAC-TAAACA-GGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAA--GGAC-GCGATC-CTCTAGAAATTAGATATCGTGTCGACCCCCGTACCCCANAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCANAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTA] [+] EMBL CD086765 [CTCTCACGATCCTTCC CTCTCTCACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGC ] [+] EMBL CD061545 [ acccttaTTCCGGTGTCTTACGCTCATACCACAA TAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACTAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTACAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGGCTTTCGACCAGGGCACATTTACCAATTATCTGAACCTGCGGTTCCTCCTCCGGTACTTAAACAGGGATTACCATAGCAACGGACAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCC ] [+] EMBL CD061660 [ tagcgAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCA GGCACATATACCAATTATCTGAACCTGCGGTTCCT CTC GTAC TAAACA GGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAA GGACAGCGATC CTCTAGA ] [+] EMBL CD092810 [ ATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGGCACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCA GGCACATATACCAATTATCTGAACCTGCGGTTCCT CTC GTAC TAAACA GGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTAGTGGAC GCGCTCAGACCA CAATTAGATATCGTGTCGACCCCCGTACCCCANAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCANAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTA] consensusID : consensus_9433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 620 fasta sequence [GCACGAGGTTAGGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAATCATTACTTCAAGCAGGGATAGGATTCAATGCCTCGCAGTGTGAAAGCTGTTCGAGCACTTACGTTTCCCCGACAAAACATTAAGTCTTCTACAAACGATTTAGTTTCCTTACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGGGATCCTCTAG-AGAAGACTGCAGGCGATG] [+] EMBL AI976286 [GCACGAGGTTAGGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAATCATTACTTCAAGCAGGGATAGGATTCAATGCCTCGCAGTGTGAAAGCTGTTCGAGCACTTACGTTTCCCCGACAAAACATTAAGTCTTCTACAAACGATTTAGTTTCCTTACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTTCCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTCCCGTTGCAAATTTGGACGGGATTCATACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTTGACCAGGCACATA ] [-] EMBL CD062335 [ ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGGGATCCTCTAG AGAAGACTGCAGGCGATG] [-] EMBL CD062378 [ ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACAAGTCTCACGACGGTCTAAACCCAGCTCAGGGGGTTCTTTAGAAGACGA ] consensusID : consensus_9433#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAGTTTGGACGGGATTCAGACTTAGAGGCGTTCAGCCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAAGGACGGGGATCCTTCTAGAGTCGNACCTGCCA] [-] EMBL CD062315 [ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAGTTTGGACGGGATTCAGACTTAGAGGCGTTCAGCCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAAGGACGGGGATCCTTCTAGAGTCGNACCTGCCA] consensusID : consensus_9433#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [CAGCGTGCAAACGTGTAGATGGTAACGTCGTGAATCGATTAATAAAGCACTACCAACTAACTCCTTTCCTTCCACCATCAATGTTATTCTTGTTCCTTGATATTATATCGAGAATAATATTTGAAACACATATTTCTTGATCCGCTAACCACATGAAATGGGCAAAGAATAAGGGTCATCAAAAGACAATAATGTGGTTTGAATTTGAAAATCACCAGTTACAGTGTGAGTTGACATCTGACTGAGAGACCAGGTGAGTGGGCGAGTTGGTGCATTGTGTTATGGAGCACATATTGGTGTAATGATGTCAATGAACCATCTNTCGACTGATGACTNTGTCATCTNG] [+] EMBL CD171244 [CAGCGTGCAAACGTGTAGATGGTAACGTCGTGAATCGATTAATAAAGCACTACCAACTAACTCCTTTCCTTCCACCATCAATGTTATTCTTGTTCCTTGATATTATATCGAGAATAATATTTGAAACACATATTTCTTGATCCGCTAACCACATGAAATGGGCAAAGAATAAGGGTCATCAAAAGACAATAATGTGGTTTGAATTTGAAAATCACCAGTTACAGTGTGAGTTGACATCTGACTGAGAGACCAGGTGAGTGGGCGAGTTGGTGCATTGTGTTATGGAGCACATATTGGTGTAATGATGTCAATGAACCATCTNTCGACTGATGACTNTGTCATCTNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9433#0 ------------------------------------------------------------ consensus_9433#2 ------------------------------------------------------------ consensus_9433#1 GCACGAGGTTAGGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTT 60 consensus_9433#3 ------------------------------------------------------------ consensus_9433#0 ------------------------------------------------------------ consensus_9433#2 ------------------------------------------------------------ consensus_9433#1 TTTTTTCAAATCATTACTTCAAGCAGGGATAGGATTCAATGCCTCGCAGTGTGAAAGCTG 120 consensus_9433#3 ------------------------------------------------------------ consensus_9433#0 ------------------------------------CTCTCACGATC--CTTCCCTCTCT 22 consensus_9433#2 ------------------------------------------------------------ consensus_9433#1 TTCGAGCACTTACGTTTCCCCGACAAAACATTAAGTCTTCTACAAACGATTTAGTTTCCT 180 consensus_9433#3 ------------------------------------------------------------ consensus_9433#0 CACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGG 82 consensus_9433#2 ------------ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGG 48 consensus_9433#1 TACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGG 240 consensus_9433#3 ---------------------CAGCGTGCAAACGTGTAGATGGTAACGTCGTGAAT-CGA 38 * **** ** * ** ** ** ** consensus_9433#0 TTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCC 142 consensus_9433#2 TTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCC 108 consensus_9433#1 TTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCC 300 consensus_9433#3 TTAATAA--AGCACTACCAACTAACTCCTTTCCTTCCACCATCAATGTTATTCTTGTTCC 96 ** ** * * ** **** ** *** * * * ** *** consensus_9433#0 AGTCCAG-ACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGT 201 consensus_9433#2 AGTCCAG-ACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGT 167 consensus_9433#1 AGTCCAG-ACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGT 359 consensus_9433#3 TTGATATTATATCGAGAATAATATTTGAAACACATATTTCTTGATCCGCTAACCACATGA 156 * * * * * * **** * * * * ** ** *** consensus_9433#0 ACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATG 261 consensus_9433#2 ACCGTTGCAAGTTTGGACGGGATTCAGACTTAGAGGCGTTCAGCCTTAATCCCTCAGATG 227 consensus_9433#1 ACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATG 419 consensus_9433#3 AATGGGCAAAGAATAAGGGTCATCAAAAGACAATAATGT--GGTTTGAATTTGAAAATCA 214 * * ** * * ** * * * ** * * *** * consensus_9433#0 GTAGCTTC-GCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGG 320 consensus_9433#2 GTAGCTTC-GCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGG 286 consensus_9433#1 GTAGCTTC-GCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGG 478 consensus_9433#3 CCAGTTACAGTGTGAGTTGACATCTGACTGAG-AGACCAGGTGAGTGGGCGAGTTGGTGC 273 ** * * * * * * * * *** * * * * * ** * * consensus_9433#0 TTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCA--GATTGTACTTC-ACTGATG 377 consensus_9433#2 TTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCA--GATTGTACTTC-ACTGATG 343 consensus_9433#1 TTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCA--GATTGTACTTC-ACTGATG 535 consensus_9433#3 ATTGTGTTATGGAGCACAT-ATTGGTGTAATGATGTCAATGAACCATCTNTCGACTGATG 332 * * * * *** *** ** * * * * * * ** ******* consensus_9433#0 TACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACG---T 434 consensus_9433#2 TACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACG---T 400 consensus_9433#1 TACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGGGAT 595 consensus_9433#3 ACTNTGTCATCTNG---------------------------------------------- 346 * * * consensus_9433#0 TCCCTAAGGACGCG-ATCCTCTAGAAATTAGATATCGTGTCGACCCCCGTACCCCANAAT 493 consensus_9433#2 TCCCTAAGGACGGGGATCCTTCTAGAGTCGNACCTGCCA--------------------- 439 consensus_9433#1 CCTCTAGAGAAGA-----CTGCAGGCGATG------------------------------ 620 consensus_9433#3 ------------------------------------------------------------ consensus_9433#0 CCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGA 553 consensus_9433#2 ------------------------------------------------------------ consensus_9433#1 ------------------------------------------------------------ consensus_9433#3 ------------------------------------------------------------ consensus_9433#0 ACACATGGTCCAGTCCAGACACCANAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGA 613 consensus_9433#2 ------------------------------------------------------------ consensus_9433#1 ------------------------------------------------------------ consensus_9433#3 ------------------------------------------------------------ consensus_9433#0 TACAGAATGTA 624 consensus_9433#2 ----------- consensus_9433#1 ----------- consensus_9433#3 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||