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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 778 fasta sequence
[CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCAACACGTCACCTGGCACAATCAACAGACAATCTCGATATGCCAATCCAAAATCAAGTTCACAATCTCACATATACTCTATGTTGCATTCCTTCGTATTCACACTGTTTTTCACTGTCTCTTTTCTGTACGTTAGAACAAATCGCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGA--ATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGAC-GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAA-AGAGAGTTGGTGAACGTGACGGACAAACAGGGTGTA-GTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAG]
[+] EMBL CD146502 [CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCAACACGTCACCTGGCACAATCAACAGACAATCTCGATATGCCAATCCAAAATCAAGTTCACAATCTCACATATACTCTATGTTGCATTCCTTCGTATTCACACTGTTTTTCACTGTCTCTTTTCTGTACGTTAGAACAAATCGCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCGTAAGTAGAAAACTCAAGTCAACTACATCGA ATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGGAC AACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAG AGACGAA CACTCTC GACCACTGGGCGAATCGACGA ACCTGGAGAA AGAGAG TGGTGAACGTGACGGACAAACAGGGTGTANNTTGTgg ]
[-] EMBL CD134626 [ aCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGA ATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCGGGAGAAGAGGAGTTGGTGAACGTGAC GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAG A AGAG ]
[-] EMBL CD134679 [ ACACACGNGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCGTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCATC ACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAGCGTGAC GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGATTCGACAAACCACACTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAG GAGTTGGTGAGCGTGACGGACAAACAGGGTGTA GTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAG]
[+] EMBL CD146486 [ CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGA ATCGACGACACCTGGAGAAGAGGAGTCGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAAAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGAC GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAG GAGTTGGTGAACGTGACGGACAAACAGGGTGTA GTTGTTGGTCAGGAGA ]
consensusID : consensus_9435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 606 fasta sequence
[TTGATCCTGGCCATAGCTTGATCCTTGCTGCTTCTCCTCCTCGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA]
[+] EMBL CD096842 [TTGATCCTGGCCATAGCTTGATCCTTGCTGCTTCTCCTCCTCGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAA ]
[-] EMBL CD134174 [ GTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTATACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTAGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATCCCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCATTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGA ]
[+] EMBL CD087492 [ ACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAGCGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA]
consensusID : consensus_9435#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[CGGTACCCTGGGCAAGGGTGGAAAATCAGGAAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTGATCGTCTTACCAGTCAACGTCTTCGCAAATATTTGCATTCCACCACGTAGACGAAGGACAAGACGCAGAGTCGACTCTTTCTGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGCTGTAGTCAG]
[+] EMBL CD168067 [CGGTACCCTGGGCAAGGGTGGAAAATCAGGAAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTGATCGTCTTACCAGTCAACGTCTTCGCAAATATTTGCATTCCACCACGTAGACGAAGGACAAGACGCAGAGTCGACTCTTTCTGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGCTGTAGTCAG]
consensusID : consensus_9435#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[TGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGGAACGAAGGAGGATACGACAAACCACACTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAGGAGGTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACCAACAACGTTTGATCTTCGCTGGTAGGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCT]
[+] EMBL CD144597 [TGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGGAACGAAGGAGGATACGACAAACCACACTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAGGAGGTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACCAACAACGTTTGATCTTCGCTGGTAGGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9435#0 CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCAACACGT 60
consensus_9435#3 ------------------------------------------------------------
consensus_9435#1 ------------------------------------------------------------
consensus_9435#2 ------------------------------------------------------------
consensus_9435#0 CACCTGGCACAATCAACAGACAATCTCGATATGCCAATCCAAAATCAAGTTCACAATCTC 120
consensus_9435#3 ------------------------------------------------------------
consensus_9435#1 ------------------------------------------------------------
consensus_9435#2 ------------------------------------------------------------
consensus_9435#0 ACATATACTCTATGTTGCATTCCTTCGTATTCACACTGTTTTTCACTGTCTCTTTTCTGT 180
consensus_9435#3 ------------------------------------------------------------
consensus_9435#1 ----------------------------------------TTGATCCTGGCCATAGCTTG 20
consensus_9435#2 ------------------------------------------------------------
consensus_9435#0 ACGTTAGAACAAATCGCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCA 240
consensus_9435#3 ------------------------------------------------------------
consensus_9435#1 ATCCTTGCTGCTTCTCCTCCTCGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTG 80
consensus_9435#2 ------------------------------------------------------------
consensus_9435#0 TGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGA 300
consensus_9435#3 ------------------------------------------------------------
consensus_9435#1 CATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTC 140
consensus_9435#2 ------------------------------------------------------------
consensus_9435#0 ACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCAC 360
consensus_9435#3 ------------------------------------------------------------
consensus_9435#1 AGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGG 200
consensus_9435#2 -----------------------------CGGTACCCTGGG-CAAGGGTGGAAAATCAGG 30
consensus_9435#0 ACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGAATCGAC 420
consensus_9435#3 ------------------------------------------------------------
consensus_9435#1 A-GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATC-ACTAGGC 258
consensus_9435#2 AAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATC-ACTAGGC 89
consensus_9435#0 GACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCA 480
consensus_9435#3 --------------------TGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCA 40
consensus_9435#1 TCCACCTCCA-------ACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 311
consensus_9435#2 TCCACCTCCA-------ATGTGATCGTCTTACCAGTCAACGTCTTCGCAAATATTTGCAT 142
** * * * * * *** * * ** *
consensus_9435#0 GGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACC 540
consensus_9435#3 GGAGGAACGAAGGAGGATACGACAAACCACACTCGGACCACAGGGCGAATCGACGACACC 100
consensus_9435#1 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 371
consensus_9435#2 TCCACCACGTAGACGAAGGACAAGACGCAGAGTCGACTCTTTCTG-ATGTTGTAGTCAGA 201
*** ** * * * * ** *** * * * * * **
consensus_9435#0 TGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTA--GTTGTTGGTCAGGAG 598
consensus_9435#3 TGGAGAAGAGGAGGTGGTGAACGTGACGGACAAACAGGGTGTA--GTTGTTGGTCAGGAG 158
consensus_9435#1 CAGAGTACGTCCATCTTCCAAC-TGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 430
consensus_9435#2 CAGAGTACGTCCATCTTCCAAC-TGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGAG 260
*** * *** ** ** * * * * ***************
consensus_9435#0 AAACGAAGGAGGAGAAGACGAAC--CACTCTCGGACCACTGGGCGAATC----GACGACA 652
consensus_9435#3 AAACGAAGGAGGAGAAGACGAAC--CACTCTCGGACCACTGGGCGAATC----GACGACA 212
consensus_9435#1 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 490
consensus_9435#2 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 320
** * ** * * ** ** * * *** * * **
consensus_9435#0 CCTGGAGAAAGAGAGTTGGTGAACGTGACGGACAAACAGG-GTGTAGTT---GTTGGTCA 708
consensus_9435#3 CCTGGAGAAGAGGAGTTGGTGAACGTGACGGACCAACAAC-GTTTGATCTTCGCTGGTAG 271
consensus_9435#1 CCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTA 550
consensus_9435#2 CCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATTCCACCACGTA 380
*** * ** * * * *** * *
consensus_9435#0 GGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACAGGGCGAATCGACG--ACA 766
consensus_9435#3 GCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCA 331
consensus_9435#1 GACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA---- 606
consensus_9435#2 GACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGCTGTAGTCAG------------ 428
* * * *
consensus_9435#0 CCTGGAGAAGAG--- 778
consensus_9435#3 TCTTGTCCTTCGTCT 346
consensus_9435#1 ---------------
consensus_9435#2 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||