These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 577 fasta sequence [ATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAATATTAATCAACCTAGTTTAGTTGTATTTGTTCGAGGATGATT] [+] EMBL CD155987 [ATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACGTTAAGGCTTTGGATCAATTAATTTCTAAGAAAT ] [+] EMBL CD119876 [ AGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGGTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAAT ] [+] EMBL CD147068 [ ATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAG ] [+] EMBL CD110853 [ ACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAA ] [-] EMBL CD111499 [ CAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTAATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAAT ] [+] EMBL AI478026 [ CTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAATATTAATCAACCTAGTTTAGTTGTATTTGTTCGAGGATGATT] consensusID : consensus_9437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CGTGAACCTATTAATTGGGATGAAGTGAACAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAGATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATGTATGTTTAAAATAAAGATAATTGTTTGCACTAAACTCATGGTTGATTTTAGACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGGTATAATCAGATAATACAAATAAATGCAAATCTTATCGTCTCATCATTCACACTCATGAATCATTACACTGATTTGTTTCAGCTATTTCGATTTTTCACAAATCAATTGGGATCATAAGTCATTCTACTTCTTTATTGTACTTACTTTCTAAAAGTTACACAAAACAATCAAATGAGAGTTACAGTGATAACATTCCTAATCTGTATCAAAAAACCACGAACATTTCAGATCAT] [+] EMBL CD154171 [CGTGAACCTATTAATTGGGATGAAGTGAACAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAGATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATGTATGTTTAAAATAAAGATAATTGTTTGCACTAAACTCATGGTTGATTTTAGACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGGTATAATCAGATAATACAAATAAATGCAAATCTTATCGTCTCATCATTCACACTCATGAATCATTACACTGATTTGTTTCAGCTATTTCGATTTTTCACAAATCAATTGGGATCATAAGTCATTCTACTTCTTTATTGTACTTACTTTCTAAAAGTTACACAAAACAATCAAATGAGAGTTACAGTGATAACATTCCTAATCTGTATCAAAAAACCACGAACATTTCAGATCAT] consensusID : consensus_9437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [TATTTCATCTTTATTGTTAGTACATTACCAAGCTGAGATGCCAAAATACTCTGCTATAAATGCGCTATTCGATAAGGCATTGGGAGATGAACCTATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAAGTAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTAACATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATACACAATACTTGAAATGTAAAGTTAACACAACAGGAGAATCCTTCAATTTATTTATCAAGAAATGAATAACGTTTAAAGTACATCTACACATTTACGGATATCACTGTGAAGACTGTTCATAAAGAAGAAAGTTTTGAAGAAGAGTCTCTAAATATGAGTTGCCCTATCGAACTCCTGAGAGACTTAGGCTGGATCATTATTGCAAGAATCGATTTTGTGAGTG] [+] EMBL AW497760 [TATTTCATCTTTATTGTTAGTACATTACCAAGCTGAGATGCCAAAATACTCTGCTATAAATGCGCTATTCGATAAGGCATTGGGAGATGAACCTATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAAGTAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTAACATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATACACAATACTTGAAATGTAAAGTTAACACAACAGGAGAATCCTTCAATTTATTTATCAAGAAATGAATAACGTTTAAAGTACATCTACACATTTACGGATATCACTGTGAAGACTGTTCATAAAGAAGAAAGTTTTGAAGAAGAGTCTCTAAATATGAGTTGCCCTATCGAACTCCTGAGAGACTTAGGCTGGATCATTATTGCAAGAATCGATTTTGTGAGTG] consensusID : consensus_9437#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTT] [+] EMBL CD119884 [TTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9437#0 ------------------------------------------------------------ consensus_9437#2 TATTTCATCTTTATTGTTAGTACATTACCAAGCTGAGATGCCAAAATACTCTGCTATAAA 60 consensus_9437#1 ------------------------------------------------------------ consensus_9437#3 ------------------------------------------------------------ consensus_9437#0 ----------------------------------ATACGTGAACCTATTAATTGGGATGA 26 consensus_9437#2 TGCGCTATTCGATAAGGCATTGGGAGATGAACCTATACGTGAACCTATTAATTGGGATGA 120 consensus_9437#1 -------------------------------------CGTGAACCTATTAATTGGGATGA 23 consensus_9437#3 ------------------------------------------------------------ consensus_9437#0 AGTGAGCAAAA-TAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGT 85 consensus_9437#2 AGTGAGCAAAAGTAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGT 180 consensus_9437#1 AGTGAACAAAA-TAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGT 82 consensus_9437#3 ---------------------------------TTGTTCACTTCATCCCAA-TTAACTAA 26 * * **** ** * ** * consensus_9437#0 TATTAAAGAGTCAAATA-AGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATC 144 consensus_9437#2 TATTAAAGAGTCAAATA-AGTAACATGGGTCAAAATCTGGTTAAAAAACATAGAGCGAT- 238 consensus_9437#1 TATTAAAGAGTCAGATA-AGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATC 141 consensus_9437#3 GTTTATAGGTTCACGTATAGGTTCATC--TCCCAATGTTATTTGACTCTTTAATAACATT 84 *** ** *** ** ** *** ** *** * ** * ** ** consensus_9437#0 ACACAATACTTGA--AATGTAAAAGTAAACAACAACAAGAAGA--AACCTTCAATTTATT 200 consensus_9437#2 ACACAATACTTGA--AATGTAAAGTTAAC--ACAACA-GGAGA--ATCCTTCAATTTATT 291 consensus_9437#1 ACACAATGTATGTTTAAAATAAAGATAATTGTTTGCACTAAACTCATGGTTGATTTTAGA 201 consensus_9437#3 TCATTTTCTCTGAACATAGTTATTCCTCTC-TCTACATCATTTATTTTGTTCACTTCATC 143 ** * ** * * * ** ** * ** * consensus_9437#0 TATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATT--AT 258 consensus_9437#2 TATCAA-GAAATGAATAA--CGTTTAAAG--TACA-TCTA-CA-CATTTACGGAT---AT 340 consensus_9437#1 CTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAG--GT 259 consensus_9437#3 C--CAATTAACTAAGTTTATAGGTTCACG-------TATAGGTTCATCTCCCAATGTTAT 194 ** * * * * ** * * * consensus_9437#0 TCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCT 318 consensus_9437#2 C--ACTGTGAAG-ACTGTT-CATAAA----GAAGAAAGTTTTGAAGAAGAG----TCTCT 388 consensus_9437#1 ATAATCAGATAATACAAATAAATGCAAATCTTATCGTCTCATCATTCACAC----TCATG 315 consensus_9437#3 TTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTC---TACATC 251 * * * * ** * * * consensus_9437#0 AAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTG 378 consensus_9437#2 AAATATGA-----GTTGCCC--TATCGAA-----CTCCTGA----GAGACTTAGGCT--G 430 consensus_9437#1 AATCATTACACTGATTTGTT-TCAGCTATTTCGATTTTTCACAAATCAATTGGGATCATA 374 consensus_9437#3 ATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTT----------------------- 288 * ** * * consensus_9437#0 GATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAAC 438 consensus_9437#2 GATCA-TTA--TTGCAAGAATCG----ATTTTGTGAGTG--------------------- 462 consensus_9437#1 AGTCATTCTACTTCTTTATTGTACT-TACTTTCTAAAAGTTACACAAAACAAT---CAAA 430 consensus_9437#3 ------------------------------------------------------------ consensus_9437#0 TACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAAC 498 consensus_9437#2 ------------------------------------------------------------ consensus_9437#1 TGAGAGTTACAGTGATAACATTCCTAATCTGTATCAAAAAACC-ACGAACATTTCAGATC 489 consensus_9437#3 ------------------------------------------------------------ consensus_9437#0 TTGGGATAGAATGCTGTTTGGAAATATTTATCACGAATATTAATCAACCTAGTTTAGTTG 558 consensus_9437#2 ------------------------------------------------------------ consensus_9437#1 AT---------------------------------------------------------- 491 consensus_9437#3 ------------------------------------------------------------ consensus_9437#0 TATTTGTTCGAGGATGATT 577 consensus_9437#2 ------------------- consensus_9437#1 ------------------- consensus_9437#3 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||