These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 800 fasta sequence [ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAATAATAATTTATTACATTGATAAGAGGGAATTATATGAAAAAATTATTTAAAGTTCATCGGTAAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGGTTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTTAAGTCATTTGAAGTATGGTTCCCTTCTTCATAGACGAAAGCGACCCCACCAGTATAAAGGAAGTAATCACCGGACCAATTAAAAGTCCCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAAATTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGTTCGTAATGAGTGGATTACTTCTGTTATACTTAGTTTGCA] [+] EMBL CD075262 [ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAATAATAATTTATTACATTGATAAGAGGGAATTATATGAAAAAATTATTTAAAGTTCATCGGTAAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGGTTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTTAAGTCATTTGAAGTATGGTTCCCTTCTTCATAGACGAAAGCGACCCCACCAGTATAAAGGAAGTAATCACCGGACCAATTAAAAGTCCCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGGGCATCAGTATATGAAGGTCCAATAAAGTAACGAACACGAACTTGAGCTGATTGA ] [+] EMBL CD075991 [ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAATAATAATTTATTACATTGATAAAAGGGAATTATTTGAAAAAATTATTTAAAGTTCATCGGTAAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGGTTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTAAAGTCATTGGAAGTATGGTTCCCTTCTTCATAGACGAAAGCGACCCCCCCAGTTTAAAGGAAGTAATCCCCGGACCAATTAAAAGTCCCTATGTAGGCTGTTTTATCGGTTACCATGTTTTTATTATGATTCACCCGACCATATGGTATTCTTTTTTGGGCATCAGTTTATGAAGGTCCAATAA ] [+] EMBL CD192426 [ AAGGAAGTAATCACCGGACCAATTAGAAGTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTC ] [+] EMBL CD140876 [ ATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAAATTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGTTCGTAATGAGTGGATTACTTCTGTTATACTTAGTTTGCA] [+] EMBL CD140811 [ ATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAACTTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGTTCGTAATAAGTGGATTACTTCTGTTATACTT ] [+] EMBL CD140759 [ ATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACGATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAAATTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGT ] consensusID : consensus_9439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 596 fasta sequence [ATGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTATAATATGGTAAA-CTCAATATCTGGAAATATAGGAGAGTACATGGACTAATTGT] [+] EMBL CD085593 [ATGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTATAATATGGTAAA CTCAATATCTGGAAATATAGGAGAGTACATGGACTAATTG ] [+] EMBL CD085525 [ATGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTANTATATGGTAAANCTC ATATCTGGAAATATAGGAGAGTACATGGACTAATTG ] [-] EMBL CD085462 [ TGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTATAATATGGTAAA CTCAATATCTGGAAATATAGGAGAGTACATGGACTAATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9439#0 ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAAT 60 consensus_9439#1 ------------------------------------------------------------ consensus_9439#0 AATAATTTATTACATTGATAAGAGGGAATTATATGAAAAAATTATTTAAAGTTCATCGGT 120 consensus_9439#1 ------------------------------------------------------------ consensus_9439#0 AAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGG 180 consensus_9439#1 ------------------------------------------------------------ consensus_9439#0 TTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTTAAGTCATTTGAAGTATG 240 consensus_9439#1 ------------------------------ATGACAAGAATTTA---CTGCTGATATATA 27 ** ***** * *** *** consensus_9439#0 GTTCCCTTCTT-CATAGACGAAAGCGACCCCACCAGTATAAAGGAAGTAATCACCGGACC 299 consensus_9439#1 AACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATAC 87 * ***** * * ** * *** *** * * * * * * consensus_9439#0 AATTAAAAGTC--CCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCAC 357 consensus_9439#1 TGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCAC 147 * *** * *********************************************** consensus_9439#0 CCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAAC 417 consensus_9439#1 CCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTG 207 ********************************************************* consensus_9439#0 ACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGG-AATTCAAAAAATTCTCAG 476 consensus_9439#1 TTAAAA--AAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACT--- 262 ** * * * ** * * ** * * * **** * *** ** consensus_9439#0 TAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACG---AT 533 consensus_9439#1 TTAATGTCAGTTTTTATCACTCATTAACATCACGTAAA-GTACTTCTAAAAATCAGGAAT 321 * *** ** * * * ** **** ******* * * * * ** consensus_9439#0 CAATTGCAGCTTTACGCAACGCGTTATCAATAACTGG--CCAAAATCGTGAAGGTATATT 591 consensus_9439#1 CTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACG 381 * ** *** * ** ***** * * ** * * * * * consensus_9439#0 TGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCT-ATATAAATAAATTTTT 650 consensus_9439#1 TAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTG 441 * * * * * * * * ***** * **** * * * * * * ** consensus_9439#0 CCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGT-CCAGGTGGGTTG 709 consensus_9439#1 ATGC--CATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTC 499 ** *** * ** ** * * * ** * * *** ** ** consensus_9439#0 AACAAAGAAGGAGAACTTGAA-----AAGTATACACGCGATTGGATACCATTAATGTTCG 764 consensus_9439#1 TCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTT-ATAATAT-GGTAAACT 557 ** * * * *** * * * * * *** * *** *** ** * * consensus_9439#0 TAATGAGTGGATTACTTCTGTTATACTTAGTTTGCA--- 800 consensus_9439#1 CAATATCTGGAAATATAGGAGAGTACATGGACTAATTGT 596 *** **** * *** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||