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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 800 fasta sequence
[ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAATAATAATTTATTACATTGATAAGAGGGAATTATATGAAAAAATTATTTAAAGTTCATCGGTAAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGGTTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTTAAGTCATTTGAAGTATGGTTCCCTTCTTCATAGACGAAAGCGACCCCACCAGTATAAAGGAAGTAATCACCGGACCAATTAAAAGTCCCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAAATTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGTTCGTAATGAGTGGATTACTTCTGTTATACTTAGTTTGCA]
[+] EMBL CD075262 [ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAATAATAATTTATTACATTGATAAGAGGGAATTATATGAAAAAATTATTTAAAGTTCATCGGTAAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGGTTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTTAAGTCATTTGAAGTATGGTTCCCTTCTTCATAGACGAAAGCGACCCCACCAGTATAAAGGAAGTAATCACCGGACCAATTAAAAGTCCCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGGGCATCAGTATATGAAGGTCCAATAAAGTAACGAACACGAACTTGAGCTGATTGA ]
[+] EMBL CD075991 [ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAATAATAATTTATTACATTGATAAAAGGGAATTATTTGAAAAAATTATTTAAAGTTCATCGGTAAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGGTTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTAAAGTCATTGGAAGTATGGTTCCCTTCTTCATAGACGAAAGCGACCCCCCCAGTTTAAAGGAAGTAATCCCCGGACCAATTAAAAGTCCCTATGTAGGCTGTTTTATCGGTTACCATGTTTTTATTATGATTCACCCGACCATATGGTATTCTTTTTTGGGCATCAGTTTATGAAGGTCCAATAA ]
[+] EMBL CD192426 [ AAGGAAGTAATCACCGGACCAATTAGAAGTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTC ]
[+] EMBL CD140876 [ ATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAAATTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGTTCGTAATGAGTGGATTACTTCTGTTATACTTAGTTTGCA]
[+] EMBL CD140811 [ ATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAACTTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGTTCGTAATAAGTGGATTACTTCTGTTATACTT ]
[+] EMBL CD140759 [ ATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACGATAAAGTAACGAACACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGGAATTCAAAAAATTCTCAGTAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACGATCAATTGCAGCTTTACGCAACGCGTTATCAATAACTGGCCAAAATCGTGAAGGTATATTTGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCTATATAAATAAATTTTTCCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGTCCAGGTGGGTTGAACAAAGAAGGAGAACTTGAAAAGTATACACGCGATTGGATACCATTAATGT ]
consensusID : consensus_9439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 596 fasta sequence
[ATGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTATAATATGGTAAA-CTCAATATCTGGAAATATAGGAGAGTACATGGACTAATTGT]
[+] EMBL CD085593 [ATGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTATAATATGGTAAA CTCAATATCTGGAAATATAGGAGAGTACATGGACTAATTG ]
[+] EMBL CD085525 [ATGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTANTATATGGTAAANCTC ATATCTGGAAATATAGGAGAGTACATGGACTAATTG ]
[-] EMBL CD085462 [ TGACAAGAATTTACTGCTGATATATAAACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATACTGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCACCCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTGTTAAAAAAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACTTTAATGTCAGTTTTTATCACTCATTAACATCACGTAAAGTACTTCTAAAAATCAGGAATCTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACGTAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTGATGCCATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTCTCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTTATAATATGGTAAA CTCAATATCTGGAAATATAGGAGAGTACATGGACTAATTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9439#0 ATTTTATCTTTTAAAAAAAACATTGACCTTACATTTATCAGTTTAGGGTTTATAAATAAT 60
consensus_9439#1 ------------------------------------------------------------
consensus_9439#0 AATAATTTATTACATTGATAAGAGGGAATTATATGAAAAAATTATTTAAAGTTCATCGGT 120
consensus_9439#1 ------------------------------------------------------------
consensus_9439#0 AAACTCTGAGTTCCAATCTCGACGGAAAACGTTTTCCAATTGTTTTCTGAAAAATATTGG 180
consensus_9439#1 ------------------------------------------------------------
consensus_9439#0 TTTCGGTAAACAAAATTCACTATGATCTGTATTTTCTTGATTTAAGTCATTTGAAGTATG 240
consensus_9439#1 ------------------------------ATGACAAGAATTTA---CTGCTGATATATA 27
** ***** * *** ***
consensus_9439#0 GTTCCCTTCTT-CATAGACGAAAGCGACCCCACCAGTATAAAGGAAGTAATCACCGGACC 299
consensus_9439#1 AACACATTCTTGTACAAACTTGATCGATTTGACCCACTAATTATTATCATTTTTCCATAC 87
* ***** * * ** * *** *** * * * * * *
consensus_9439#0 AATTAAAAGTC--CCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCAC 357
consensus_9439#1 TGTAAAATGCTTACCTATGTAGGCTGTTTTATCGGTTACCATGTATTTATTATGATTCAC 147
* *** * ***********************************************
consensus_9439#0 CCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGAAC 417
consensus_9439#1 CCGAGCATATGGTATTCTTTTTTGTGCATCAGTATATGAAGGTACAATAAAGTAACGCTG 207
*********************************************************
consensus_9439#0 ACGAACTTGAGCTGATTGAACTCCATAAATTGCTCGTAGGG-AATTCAAAAAATTCTCAG 476
consensus_9439#1 TTAAAA--AAACGCAAAAAATACAACAATCTATTTTAAAAATAATTTAGTGAATACT--- 262
** * * * ** * * ** * * * **** * *** **
consensus_9439#0 TAGATGACAAAGTATGATTCCATTTGCTGATTAGTAAGCGTACTTCAACAGAACG---AT 533
consensus_9439#1 TTAATGTCAGTTTTTATCACTCATTAACATCACGTAAA-GTACTTCTAAAAATCAGGAAT 321
* *** ** * * * ** **** ******* * * * * **
consensus_9439#0 CAATTGCAGCTTTACGCAACGCGTTATCAATAACTGG--CCAAAATCGTGAAGGTATATT 591
consensus_9439#1 CTGTTTCAGTCAGTATCCACAATCCCGCAATAGATTGAACCTACACAACGTCAGGTCACG 381
* ** *** * ** ***** * * ** * * * * *
consensus_9439#0 TGTATTATAACTTATGACTTGAGGCACGAAATTCATAACAGCT-ATATAAATAAATTTTT 650
consensus_9439#1 TAGAGAACACCAAACAATGGAAATGTAGAAATATAAAACAAATCACTTTATTTTAACTTG 441
* * * * * * * * ***** * **** * * * * * * **
consensus_9439#0 CCGCAGAATTTATAACGGAAAGTAGAGCATCTATGTCATCATTTCGT-CCAGGTGGGTTG 709
consensus_9439#1 ATGC--CATTCAGGACCACAACCAATCGACAAGTAACAAGTTCAGATGTTAGGCGGCTTC 499
** *** * ** ** * * * ** * * *** ** **
consensus_9439#0 AACAAAGAAGGAGAACTTGAA-----AAGTATACACGCGATTGGATACCATTAATGTTCG 764
consensus_9439#1 TCCAGAAATGAAGAGTCAGTAGTTTTATGATTTCACCCAATTT-ATAATAT-GGTAAACT 557
** * * * *** * * * * * *** * *** *** ** * *
consensus_9439#0 TAATGAGTGGATTACTTCTGTTATACTTAGTTTGCA--- 800
consensus_9439#1 CAATATCTGGAAATATAGGAGAGTACATGGACTAATTGT 596
*** **** * *** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||