cluster # 9443

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Schistosoma mansoni
cluster # 9443 cluster # 9443 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9443#0 length = 1226 sequences # 7

consensus_9443#1 length = 472 sequences # 2

consensusID : consensus_9443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1226
fasta sequence

                              [GTGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAAAACATTGAATCAGTTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTTGAAATTTCCCTATATGATTCTCTTGATAAGTGGTGGTCACGGTATTTTGGGTATTGTTCAAGGGTTAGAGGACTACGTTTTATTAGGTACAGCATTAGACGCCTCCCCAGGTGATGTTCTTGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTTTGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAATAAAAGAAATA]

[+] EMBL CD081299             [GTGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAAAACATTGAATCAGTTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTTGAAATTTCCCTATATGATTCTCTTGATAAGTGGTGGTCACGGTATTTTGGGTATTGTTCAAGGGTTAGAGGACTACGTTTTATTAGGTACAGCATTAGACGCCTCCCCAGGTGATGTTCTTGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTTTGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTNTATCGATCCAAGATATTGCTGATGTTTGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD097567             [                                                                                                                                                                                                                                                                                                                                                                                                                                          TGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTTTGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTTATTAGAAATCATCCTACAGCTT                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD077641             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              gagGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGnng                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD074232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTTTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATATACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTAAATAAAAGAAATA]
[+] EMBL CD078397             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAAT AAAGAAAT ]
[-] EMBL CD072959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAATAAAAGAAATA]
[-] EMBL CD075129             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tanTCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAATAAAAGAAATA]




>consensus_9443#0
GTGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCA
GTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATCAG
GAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTG
TATTACCCTCCGTAGCAGCTGAACTTCACAAAGAAAACATTGAATCAGTTGTAAATACTG
CTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAAC
CAGGTTGAAATTTCCCTATATGATTCTCTTGATAAGTGGTGGTCACGGTATTTTGGGTAT
TGTTCAAGGGTTAGAGGACTACGTTTTATTAGGTACAGCATTAGACGCCTCCCCAGGTGA
TGTTCTTGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTTTGAA
AGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATCATCA
ACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGG
AATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGG
ATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGAC
AAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTC
CAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTC
TAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGT
TGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTT
ACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCC
AAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGA
ACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTA
AACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATG
ACGTGATTTCTTGAATAAAAGAAATA

consensusID : consensus_9443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 472
fasta sequence

                              [ACGAGGATGGCTGTAGAATAATGCAAAATAGTTCAGATCTGCCCTCAATTTCATTCAGAACTATGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTG-GCATAGAAACGAGCTGTG-ACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGC-TGAACTTCACAAAG-AACACATTGAATCAG-TTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTATGCCATTATCTCTTAAGATTGGAGTTAGTTTCGCTAAATCTTTAGCAAGTCGATTGAAGATTCCTATCATACCGATTGATCATATGGAGGCTCATGCACTGACA]

[+] EMBL CD083867             [ACGAGGATGGCTGTAGAATAATGCAAAATAGTTCAGATCTGCCCTCAATTTCATTCAGAACTATGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTG GCATAGAAACGAGCTGTG ACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGC TGAACTTCACAAAG AACACATTGAATCAG TTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTATGCCATTATCTCTTAAGATTGGAGTTAGTTTCGCTAAATCTTTAGCAA                                                        ]
[+] EMBL CD083947             [                                                                                                                            GTTCTTGCGCATAGAAACGAGCTGTGTACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGCATGAACTTCACAAAGTAAAACATTGAATCAGCTTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTATGCCATTATCTCTAAAGATTGGAGTTAGTTCCGCTAAATCTTTAACAAGTCGATTGAAGATTCCTATCATACCGATTGATCATATGGAGGCTCATGCACTGACA]




>consensus_9443#1
ACGAGGATGGCTGTAGAATAATGCAAAATAGTTCAGATCTGCCCTCAATTTCATTCAGAA
CTATGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGC
CAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATC
AGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGG
TGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAACACATTGAATCAGTTGTAAATAC
TGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAA
ACCAGGTATGCCATTATCTCTTAAGATTGGAGTTAGTTTCGCTAAATCTTTAGCAAGTCG
ATTGAAGATTCCTATCATACCGATTGATCATATGGAGGCTCATGCACTGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9443#0      ------------------------------------------------------------
consensus_9443#1      ACGAGGATGGCTGTAGAATAATGCAAAATAGTTCAGATCTGCCCTCAATTTCATTCAGAA 60
                                                                                  

consensus_9443#0      --GTGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGC 58
consensus_9443#1      CTATGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGC 120
                         *********************************************************

consensus_9443#0      CAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATC 118
consensus_9443#1      CAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATC 180
                      ************************************************************

consensus_9443#0      AGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGG 178
consensus_9443#1      AGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGG 240
                      ************************************************************

consensus_9443#0      TGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAAAACATTGAATCAGTTGTAAATAC 238
consensus_9443#1      TGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAACACATTGAATCAGTTGTAAATAC 300
                      ************************************* **********************

consensus_9443#0      TGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAA 298
consensus_9443#1      TGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAA 360
                      ************************************************************

consensus_9443#0      ACCAGGT-TGAAATTTCCCTATATGATTCTCTTGATAAGTGGTGGTCACGGTATTTTGGG 357
consensus_9443#1      ACCAGGTATGCCATTATCTCTTAAGATTG---GAGTTAGTTTCGCTAA--ATCTTTAGCA 415
                      ******* **  ***  *   ** ****       * ***   * * *   * *** *  

consensus_9443#0      TATTGTTCAAGGGTTAGAGGACTAC-GTTTTATTAGGTACAGCATTAGACGCCTCCCCAG 416
consensus_9443#1      AGTCGATTGAAGATTCCTATCATACCGATTGATCATATGGAGGCTCATGCACTGACA--- 472
                        * * *  * * **       *** * ** ** *  *  **  * *  * *   *    

consensus_9443#0      GTGATGTTCTTGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTT 476
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      TGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATC 536
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      ATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTA 596
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      CTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTA 656
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      GTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTA 716
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      TGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTG 776
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      ATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTG 836
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      GTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGAT 896
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      TTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAG 956
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      TTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCT 1016
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      GTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCA 1076
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      TTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTG 1136
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      TTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTT 1196
consensus_9443#1      ------------------------------------------------------------
                                                                                  

consensus_9443#0      TATGACGTGATTTCTTGAATAAAAGAAATA 1226
consensus_9443#1      ------------------------------