These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 667 fasta sequence [TGACAAGGAATTGGTCTTTGTTGTGCGTTTAGTAGCTGGATTAGAGACATCACCAGAATGAATTGATGAACCATCGCTCAAACATTCATCCGTATCAGAATCAACTAGAGACTTGTCTCGTGCCGAATTCGGCACCATCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGC-TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTGAACGTACAGTTGTTTTTTTCAACTTGTTATGATACC] [-] EMBL AW017194 [TGACAAGGAATTGGTCTTTGTTGTGCGTTTAGTAGCTGGATTAGAGACATCACCAGAATGAATTGATGAACCATCGCTCAAACATTCATCCGTATCAGAATCAACTAGAGACTTGTCTCGTGCCGAATTCGGCACGAGCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAG ] [-] EMBL CD139468 [ CCTTCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGA TATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTG ] [+] EMBL CD064228 [ acgaCATCATATGCTGCAACACTTGCAGTATTGATTA TACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGNCAAATCTACAGC TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTA ] [-] EMBL CD137299 [ CTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGA ] [-] EMBL CD137005 [ CTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATGAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGC TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCGACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGA ] [-] EMBL CD186772 [ ACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTGGGCCAAATCTACAGC TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGTTGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTGAACGTACAGTTGTTTTTTTCAACTTGTTATGATACC] consensusID : consensus_9452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CAAAGATTATATATTTTGCTTGTAAATTGTCTACACACGATTATATACACAAAAAGAAAGTAAAATATGACATTGTCTTATACAAATATAAGTCTCCCTCCGCCATCTAGTCTTAAGGTAACACCGTTGATCATTGGATTTTGAAGAATGTTCATTACACAGGAACTAAATTCATCCGGTTTACCCATACGCTGTATTGCCAATTGAACATCATTTAAATAATCGAGATTAAATTGATTATATCCACGCTCTCCCATTATTGTCTTCGTATTAAGTAGACCTGGAGCAATGGAGACACACCGAATTCCTTCTCGTGCAAGATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTACCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTGTTTAAAGATAATAGAAGTAATGAATTTT] [+] EMBL AW017307 [CAAAGATTATATATTTTGCTTGTAAATTGTCTACACACGATTATATACACAAAAAGAAAGTAAAATATGACATTGTCTTATACAAATATAAGTCTCCCTCCGCCATCTAGTCTTAAGGTAACACCGTTGATCATTGGATTTTGAAGAATGTTCATTACACAGGAACTAAATTCATCCGGTTTACCCATACGCTGTATTGCCAATTGAACATCATTTAAATAATCGAGATTAAATTGATTATATCCACGCTCTCCCATTATTGTCTTCGTATTAAGTAGACCTGGAGCAATGGAGACACACCGAATTCCTTCTCGTGCAAGATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTACCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTGTTTAAAGATAATAGAAGTAATGAATTTT] consensusID : consensus_9452#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [GATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCCGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGCCAACGTTATGA] [-] EMBL BG931743 [GATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCCGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGCCAACGTTATGA] consensusID : consensus_9452#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AAAAACACAAATACTGCNTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTAACGTACAGTTGTTTTTTTCAACGTTGTTCCTTCGGTGCCGA] [-] EMBL CD077522 [AAAAACACAAATACTGCNTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTAACGTACAGTTGTTTTTTTCAACGTTGTTCCTTCGGTGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9452#0 TGACAAGGAATTGGTCTTTGTTGTGCGTTTAGTAGCTGGATTAGAGACATCACCAGAATG 60 consensus_9452#3 ------------------------------------------------------------ consensus_9452#2 ------------------------------------------------------------ consensus_9452#1 ------------------------------------------------------------ consensus_9452#0 AATTGATGAACCATCGCTCAAACATTCATCCGTATCAGAATCAACTAGAGACTTGTCTCG 120 consensus_9452#3 ------------------------------------------------------------ consensus_9452#2 ------------------------------------------------------------ consensus_9452#1 ------------------------------------------------------------ consensus_9452#0 TGCCGAATTCGGCACCATCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTT 180 consensus_9452#3 ------------------------------------------------------------ consensus_9452#2 ------------------------------------------------------------ consensus_9452#1 ------------------------CAAAGATTATATATTTTGCTTGTAAATTGTCTACAC 36 consensus_9452#0 GATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGT 240 consensus_9452#3 ------------------------------------------------------------ consensus_9452#2 ------------------------------------------------------------ consensus_9452#1 ACGATTATATACACAAAAAGAAAGTAAAATATGACATTGTCTTATACAAATATAAGTCTC 96 consensus_9452#0 AAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTT 300 consensus_9452#3 ------------------------------------------------------------ consensus_9452#2 ------------------------------------------------------------ consensus_9452#1 CCTCCGCCATCTAGTCTTAAGGTAACACCGTTGATCATTGGATTTTGAAGAATGTTCATT 156 consensus_9452#0 GCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATAT 360 consensus_9452#3 ------------------------------------------------------------ consensus_9452#2 ------------------------------------------------------------ consensus_9452#1 ACACAGGAACTAAATTCATCCGGTTTACCCATACGCTGTATTGCCAATTGAACATCATTT 216 consensus_9452#0 GAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGC 420 consensus_9452#3 ------------------------------------------------------------ consensus_9452#2 ------------------------GATCACGAGCAACTGGCAACGTAAGACCAGCAATAC 36 consensus_9452#1 AAATAATCGAGATTAAATTGATTATATCCACGCTCTCCCATTATTGTCTTCGTATTAAGT 276 consensus_9452#0 CAACGTCTGTTTCACAAAAAACA-CAATTACTGCCTAGTTCTGATAGCACAGGAGACTTT 479 consensus_9452#3 ----------------AAAAACA-CAAATACTGCNTAGTTCTGATAGCACAGGAGACTTT 43 consensus_9452#2 CACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCCGCAACACTTG 96 consensus_9452#1 AGACCTGGAGCAATGGAGACACACCGAATTCCTTCTCGTGC-AAGATCACGAGCAACTGG 335 * * ** * * * * * * * *** consensus_9452#0 T---GTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCC 536 consensus_9452#3 T---GTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCC 100 consensus_9452#2 C---AGTATTGAT-TATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATT 152 consensus_9452#1 CAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACC 395 * * ** * * * * * * * consensus_9452#0 AACCCAAGT-----CCTGATGATCCTCCAGTTACGATTGCAG-ATAATCCTTTTAA---- 586 consensus_9452#3 AACCCAAGT-----CCTGATGATCCTCCAGTTACGATTGCAG-ATAATCCTTTTAA---- 150 consensus_9452#2 AAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGG-TTAGTCTTTATTACTTT 211 consensus_9452#1 TTCATATGCT----GCAACACTTGCAGTATTGATTATTACACCACGTTGATTACCAGCGT 451 * * * * * * * ** * consensus_9452#0 -TGAGGCAAACATGATCAC----CCAGAT-TCTATTGAGTCGATTTGTGTGAACGTACAG 640 consensus_9452#3 -TGAGGCAAACATGATCAC----CCAGAT-TCTATTGAGTCGATTTGTGT-AACGTACAG 203 consensus_9452#2 CTCAAATAAATCCAGTGGA----TGAGGTGTTTGCCGTGTGGTATTGAAT-GTTTTACAG 266 consensus_9452#1 CTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAA 511 * * * ** * * * *** * * consensus_9452#0 TTGTTTTT---TTCAAC----TTGTTATGATACC-------------------------- 667 consensus_9452#3 TTGTTTTT---TTCAACGTTGTTCCTTCGGTGCCGA------------------------ 236 consensus_9452#2 GCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCC 326 consensus_9452#1 G-GTTAGTCTGTTTAAAG--ATAATAGAAGTAATGAATTTT------------------- 549 * * * consensus_9452#0 --------------------------------------------- consensus_9452#3 --------------------------------------------- consensus_9452#2 AAATCTACAGCTTTTTTCGCATCAGATTCTGAGCCAACGTTATGA 371 consensus_9452#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||