These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1896 fasta sequence [TCGGCCAACTCCTTGGGATTTATATATTCAAGTGATTGTCCGCACCTTGAAGTAACTGTTTGCACGGAGATGACGCTTCGAGCTGGTGCGTCTAATATTTCTGTCTCGAGCATGGCGCCGCTACTTCACTCTATCATCTGTTGATGCAGTCATCGAATTGATGCGAGAAGTGTTTGTCAGCTGTGCAGGAGTCTTTTCTGATGAACAGACAGGCATGATGCATCTGACAGCTAATACCATCGATAACTCTGATATATGTGACATTGGAGTTGACTACTCCATCAGAGAACCTAATTTAGCTTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGAAAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGAAACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCGTGTTCGTCAACGAAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCCACTCACCATTGCTGCTAAAAATGAACCACTANCAATATTCACAGACATACCAGTCAGGAAGCGACGTCGATTTTCTGATAGCACTATACCAAATTCAGCTTTTCCATGTTTAACATTTGATGAACTTGAACGCTTGTACTTAGATTTCTACAATCTCATCACTAATTCCCCTAAATTGAAACCTCTTGTAGCAGACACAAGCAGTTTTACTAATGGATCAGAATCGAAAACACAGAAGTNTCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGTCATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGTGTCAAAG-ACGATTGACGCACACACAAAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTATACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTTGGGTACAAGAGTCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTTTGTCGTCCACGCATCATGGCTGTGGCTGCTGCGATTGCGGCGATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCTTATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACCGGCTTAGTTAAGCATTTATCATCAGCATCAGTGATCTCGATGCAGCTGGTTACATTAAAACATCAACTTTTATGGTTATGCTTCGATGCTGGTTGTCTATCACGTTATCCTTTAGGATTAACTAATTTAGGTGATTTAGAAGACGCATTTCCTACCATGGGACGACTTGCTACATATTTAAATTCATTACATTCGTCAGTTAAAACAAATTTAAAATGTACTAATGATTTAACGAATGAATTAAATGTTTTGGTGGATCAGTCCAACTATTCGTCA] [+] EMBL CD138859 [TCGGCCAACTCCTTGGGATTTATATATTCAAGTGATTGTCCGCACCTTGAAGTAACTGTTTGCACGGAGATGACGCTTCGAGCTGGTGCGTCTAATATTTCTGTCTCGAGCATGGCGCCGCTACTTCACTCTATCATCTGTTGATGCAGTCATCGAATTGATGCGAGAAGTGTTTGTCAGCTGTGCAGGAGTCTTTTCTGATGAACAGACAGGCATGATGCATCTGACAGCTAATACCATCGATAACTCTGATATATGTGACATTGGAGTTGACTACTCCATCAGAGAACCTAATTTAGCTTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAGACTTGTATCCAAAAGAAAGGAAAATTTACTTCAGAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGATGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAAT ] [+] EMBL CD154798 [ TATATGTGACATCGGAGTTGACTCCTCCATCAAAGAACCTAATTTAGCTTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGAAAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGAAACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCGTGTTCGTCAACGAAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCCACTCACCATTGCTGCTAAAAATGAACCACTANCAATATTCACAGACATACCAGTCAGGAAGCGACGTCGA ] [-] EMBL CD117233 [ ATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGAAAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAATAAGTTAAGTTCCATCCCCAG ] [+] EMBL CD115820 [ CACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGTAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGAAACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCGTGTTCGTCAACGGAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCCACTCACCATTGCTGCTAAAAATGAACCACTACAAATATTCACAGACATACCAGTCAGGAAGCGACGTCGATTTTCTGATAGCACTATACCAAATTCAGCTTTTCCATGTTTAACATTTGATGAACTTGAACGCTTGTACTTAGATTTCTACAATCTCATCACTAATTCCCCTAAATTGAAACCTCTTGTAGCAGACACAAGCAGTTTTACTAATGGATCAGAATCGAAAACACAGAAGTNTCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGTCATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGCGTCTAAG ACGATTGACGCCCACACAAAGCGTATATT ] [+] EMBL CD151841 [ AAAACACAGAAATTTCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGTCATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGTGTCAAAGAACGATTGACGCACACACAAAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTATACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTTGGGTACAAGAGTCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCT ] [-] EMBL CD117089 [ AGCCAAATGACAGCTAGTCGTGTCAAAGAACGATTGACGCACACACANAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTATACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTTGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTTTGTCGTCCACGCATCATGGCTGTGGCTGCTGCGATTGCGGCGATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCC ] [+] EMBL CD146788 [ ACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTTTGTCGTCCACGCATAATGGCTGTGGCTGCTGCGATTGCGGCGATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCTTATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACCGGCTTAGTTAAGCATTTATCATCAGCATCAGTGA ] [-] EMBL CD179131 [ TACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCTTATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACCGGCTTAGTTAAGCATTTATCATCAGCATCAGTGATCTCGATGCAGCTGGTTACATTAAAACATCAACTTTTATGGTTATGCTTCGATGCTGGTTGTCTATCACGTTATCCTTTAGGATTAACTAATTTAGGTGATTTAGAAGACGCATTTCCTACCATGGGACGACTTGCTACATATTTAAATTCATTACATTCGTCAGTTAAAACAAATTTAAAATGTACTAATGATTTAACGAATGAATTAAATGTTTTGGTGGATCAGTCCAACTATTCGTCA] consensusID : consensus_9464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [CCAGTAGAGCCACCCACCCTATGCTCGGATTGGCGTATACAGTTGTCGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTGGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCACTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTT] [+] EMBL CD162626 [CCAGTAGAGCCACCCACCCTATGCTCGGATTGGCGTATACAGTTGTCGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTGGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCACTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9464#0 TCGGCCAACTCCTTGGGATTTATATATTCAAGTGATTGTCCGCACCTTGAAGTAACTGTT 60 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TGCACGGAGATGACGCTTCGAGCTGGTGCGTCTAATATTTCTGTCTCGAGCATGGCGCCG 120 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 CTACTTCACTCTATCATCTGTTGATGCAGTCATCGAATTGATGCGAGAAGTGTTTGTCAG 180 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 CTGTGCAGGAGTCTTTTCTGATGAACAGACAGGCATGATGCATCTGACAGCTAATACCAT 240 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 CGATAACTCTGATATATGTGACATTGGAGTTGACTACTCCATCAGAGAACCTAATTTAGC 300 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGA 360 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 CTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGA 420 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 AAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACC 480 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGA 540 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 ATTGAGCAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGA 600 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 AACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCG 660 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TGTTCGTCAACGAAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCC 720 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 ACTCACCATTGCTGCTAAAAATGAACCACTANCAATATTCACAGACATACCAGTCAGGAA 780 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 GCGACGTCGATTTTCTGATAGCACTATACCAAATTCAGCTTTTCCATGTTTAACATTTGA 840 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TGAACTTGAACGCTTGTACTTAGATTTCTACAATCTCATCACTAATTCCCCTAAATTGAA 900 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 ACCTCTTGTAGCAGACACAAGCAGTTTTACTAATGGATCAGAATCGAAAACACAGAAGTN 960 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGT 1020 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 CATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGTGTCAAAGACGATTGACGCAC 1080 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 ACACAAAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTAT 1140 consensus_9464#1 ---------------------CCAGTAG-AGCCACCCACCCTATGCTCGGATTGGCGTAT 38 * * * * ** * ** ************** consensus_9464#0 ACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAA 1200 consensus_9464#1 ACAGTTGTCGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAA 98 ******** *************************************************** consensus_9464#0 GACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGT 1260 consensus_9464#1 GACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGT 158 ************************************************************ consensus_9464#0 TGGGTACAAGAGTCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCAT 1320 consensus_9464#1 GGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCAT 218 ********** ************************************************ consensus_9464#0 GATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAA 1380 consensus_9464#1 GATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAA 278 ************************************************************ consensus_9464#0 GATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTA 1440 consensus_9464#1 GATGAACATAATCCACCTTCCACTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTA 338 ********************** ************************************* consensus_9464#0 AGTGGATATCCGGTAGTTTGTCGTCCACGCATCATGGCTGTGGCTGCTGCGATTGCGGCG 1500 consensus_9464#1 AGTGGATATCCGGTAGTT------------------------------------------ 356 ****************** consensus_9464#0 ATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCT 1560 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACC 1620 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 GGCTTAGTTAAGCATTTATCATCAGCATCAGTGATCTCGATGCAGCTGGTTACATTAAAA 1680 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 CATCAACTTTTATGGTTATGCTTCGATGCTGGTTGTCTATCACGTTATCCTTTAGGATTA 1740 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 ACTAATTTAGGTGATTTAGAAGACGCATTTCCTACCATGGGACGACTTGCTACATATTTA 1800 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 AATTCATTACATTCGTCAGTTAAAACAAATTTAAAATGTACTAATGATTTAACGAATGAA 1860 consensus_9464#1 ------------------------------------------------------------ consensus_9464#0 TTAAATGTTTTGGTGGATCAGTCCAACTATTCGTCA 1896 consensus_9464#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||