These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [TTTTTCTTGATGCATTTTGGTGGTATGGTTGCAGTAGCCAACATTCGTGGTGGAGGAGAATATGGAAAATCTTGGCACGATGCCGGTCGGCTGCAAAACAAACAAAACTCCTTCGATGATTTCCAAGCAGCAGCGGAATACCTTCTTAATCATGGATATACTAACAACCAAAAACTGTACATTCAAGGAGGTAGTAATGGCGGACTTTTAGTTTGTGCCTGTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATTAGATTCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGCATTTCCCCACTCCATAATGTCAAGATTCCATCGAATTCAGATGTTCAATATCCAGCTTTATTGATTTTAACTGCAGATCATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAAGAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCANAAGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATANAATGGATTGTTATAGCAGNTACTGGTCTTTGGA-TTTTGGCACTTATATNCTCGTACTGGTGNCAATATATCTATAGTTCATTTACTACTGGCCTGATTGATCATATAGATCTTNTGGGGCTTATTATATCAGATATACTACCCTGAGACTAATTGNATACATATCTGGCTTCAATTANTCAGTACGAACAATTATCATTGTTGACGATAGA] [+] EMBL CD079379 [TTTTTCTTGATGCATTTTGGTGGTATGGTTGCAGTAGCCAACATTCGTGGTGGAGGAGAATATGGAAAATCTTGGCACGATGCCGGTCGGCTGCAAAACAAACAAAACTCCTTCGATGATTTCCAAGCAGCAGCGGAATACCTTCTTAATCATGGATATACTAACAACCAAAAACTGTACATTCAAGGAGGTAGTAATGGCGGACTTTTAGTTTGTGCCTGTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATTAGATTCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGCATTTCCCCACTCCATAATGTCAAGATTCCATCGAATTCAGATGTTCAATATCCAGCTTTATTGATTTTAACTGCAGATCATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAAGAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCANAAGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATANAATGGATTGTTATAGCAGNTACTGGTCTTTGGA TTTTGGCACTTATATNCTCGTACTGGTGNCAATATATCTATAGTTCATTTACTACTGGCCTGATTGATCATATAGATCTTNTGGGGCTTATTATATCAGATATACTACCCTGAGACTAATTGNATACATATCTGGCTTCAATTANTCAGTACGAACAATTATCATTGTTGACGATAGA] [+] EMBL CD083626 [ GTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATTAGATTCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGCATTTCCCCACTCCATAATGTCAAGATTCCATCGAATTCAGATGTTCAATATCCAGCTTTATTGATTTTAACTGCAGATCATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAAGAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCAAAAGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATAAAATGGATTGTTATAGCAGTTACTGGTCTTTGGATTTTTGGCACTTAa ] consensusID : consensus_9465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 640 fasta sequence [TCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGCATTTCCCCACTCCATAATGTCAAGATTCCATCGAATTCAGATGTTCAATATCCAGCTTTATTGATTTTAACTGCAGATCATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAAGAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCAAAAGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATAAAATGGATTGTTATAGCAGTTACTGGTCTTTGGATTTTTGGCACTTAATATCCTCGTCACTGTTGTCAATAATATCTATAGGTTCATTTTACTAACTGGCCTTGATTTGATTCATATTAAGATCTTTTGTGGTGCTTTATTTATTATCATGAATATTACTATCCCCTGATGACTTAATATGTAATACATCATTCTTGGCTTTCATATTTAGTTCATGTAACGAAAACAAATTTATACATTTGTTATGACGTATTAAAGAACGGA] [-] EMBL CD073656 [TCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGCATTTCCCCACTCCATAATGTCAAGATTCCATCGAATTCAGATGTTCAATATCCAGCTTTATTGATTTTAACTGCAGATCATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAAGAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCAAAAGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATAAAATGGATTGTTATAGCAGTTACTGGTCTTTGGATTTTTGGCACTTAATATCCTCGTCACTGTTGTCAATAATATCTATAGGTTCATTTTACTAACTGGCCTTGATTTGATTCATATTAAGATCTTTTGTGGTGCTTTATTTATTATCATGAATATTACTATCCCCTGATGACTTAATATGTAATACATCATTCTTGGCTTTCATATTTAGTTCATGTAACGAAAACAAATTTATACATTTGTTATGACGTATTAAAGAACGGA] [+] EMBL CD197036 [ GGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGCATTTCCCCACTCCATAATGTCAAGATTCCATCGAATTCAGATGTTCAATATCCAGCTTTATTGATTTTAACTGCAGATCATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAAGAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCAAAAGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATAAAATGGATTGTTATAGCAGTTACTGGTCTTTGGATTTTTGGCACTTAATATCCTCGTCACTGTTGTCAATAATATCTATAGGTTCATTTTACTAACTGGCCTTGATTTGATTCA ] [+] EMBL CD135509 [ TATCCAGCTTTATTGATTTTAACTGCAGATCATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAAGAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCAAAAGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATACTCCTTCTT ] [+] EMBL CD136590 [ AGTGGATATATACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATAAAATGGATTGTTATAGCAGTTACTGGTCTTTGGATTTTTGGCACTTAATATCCTCGTCACTGTTGTCAATAATATCTATAGGTTCATTTTACTAACTGGCCTTGATTTGATTCATATTAAGATCTTTTGTGGTGCTTTATTTATTATCATGAATATTACTATCCCCTGATGACTTAATATGTAATACATCATTCTTGGCTTTCATATTTAGTTCATGTAACGAAAACAAATTTATACA ] consensusID : consensus_9465#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 506 fasta sequence [ACATTCGTGGTGGAGGAGAATATGGAAAATCTTGGCACGATGCCGGTCGGCTGCAAAACAAACAAAACTCCTTCGATGATTTCCAAGCAGCAGCGGAATACCTTCTTAATCATGGATATACTAACAACCAAAAACTGTACATTCAAGGAGGTAGTAATGGCGGACTTTTAGTTTGTGCCTGTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATTAGATTCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCCCATACTTGATGCGGTAATCCATTTCTAAATCATCCATTCATTTTCTATTTATGGGACATTTTCATGTTTATGATTTAACTCGTACTTAATCGCAACTGCTGTGATCGATTTAAACATTTCTATTCCATGTACATCAATTAGTTGATAACCTTTTGTGATTAAATTTCGTGAACACCCTCTTATAAACC] [+] EMBL CD170543 [ACATTCGTGGTGGAGGAGAATATGGAAAATCTTGGCACGATGCCGGTCGGCTGCAAAACAAACAAAACTCCTTCGATGATTTCCAAGCAGCAGCGGAATACCTTCTTAATCATGGATATACTAACAACCAAAAACTGTACATTCAAGGAGGTAGTAATGGCGGACTTTTAGTTTGTGCCTGTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATTAGATTCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCCCATACTTGATGCGGTAATCCATTTCTAAATCATCCATTCATTTTCTATTTATGGGACATTTTCATGTTTATGATTTAACTCGTACTTAATCGCAACTGCTGTGATCGATTTAAACATTTCTATTCCATGTACATCAATTAGTTGATAACCTTTTGTGATTAAATTTCGTGAACACCCTCTTATAAAC ] [-] EMBL CD170618 [ CATTCGTGGTGGAGGAGAATATGGAAAATCTTGGCACGATGCCGGTCGGCTGCAAAACAAACAAAACTCCTTCGATGATTTCCAAGCAGCAGCGGAATACCTTCTTAATCATGGATATACTAACAACCAAAAACTGTACATTCAAGGAGGTAGTAATGGCGGACTTTTAGTTTGTGCCTGTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATTAGATTCCACAAATTTACAATTGGACATGCCTGGAAAAGTGATTATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGGTAATCCATTTCTAAATCATCCATTCATTTTCTATTTATGGGACATTTTCATGTTTATGACTTAACTCGTACTTAATCGCAACTGCTGTGATCGATTTAAACATTTCTATTTCATGTACATCAATTAGTTGATAACCTTTTGTGATTAAATTTCGTGAACACCCTCTTATAAACC] consensusID : consensus_9465#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [TGGATATACTAACAACCAAAAACTGTACATTCAAGGAGGTAGTAATGGCGGACTTCTAGTTTGTGCTGTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATAGATTCACAATTACATGACATGCTGAAGTGATATGAGATCTGATATAAAGA] [+] EMBL SMAA69031 [TGGATATACTAACAACCAAAAACTGTACATTCAAGGAGGTAGTAATGGCGGACTTCTAGTTTGTGCTGTTGCAATCAACGACCTGATTTATTTAAAGCTGCTGTTGCTCAAGTTCCAGTATGCGACCTTATAGATTCACAATTACATGACATGCTGAAGTGATATGAGATCTGATATAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9465#2 ----------------------------------------ACATTCGTGGTGGAGGAGAA 20 consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 TTTTTCTTGATGCATTTTGGTGGTATGGTTGCAGTAGCCAACATTCGTGGTGGAGGAGAA 60 consensus_9465#1 ---------------------TCCACAAATTTACAATTGGACATGCCTGG-AAAAGTGAT 38 consensus_9465#2 TATGGAAAATCTTGGCACGATGCCGGTCGGCTGCAAAACAAACAAAACTCCT---TCGAT 77 consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 TATGGAAAATCTTGGCACGATGCCGGTCGGCTGCAAAACAAACAAAACTCCT---TCGAT 117 consensus_9465#1 TATGGAGATCCTGATAATAAAAAGGATTTCTCATACTTGATGCGCATTTCCCCACTCCAT 98 consensus_9465#2 GATTTCCAAGCAGCAGCGGAATACCTTCTTAATCATGGATATACTAACAACCAAAAACTG 137 consensus_9465#3 -----------------------------------TGGATATACTAACAACCAAAAACTG 25 consensus_9465#0 GATTTCCAAGCAGCAGCGGAATACCTTCTTAATCATGGATATACTAACAACCAAAAACTG 177 consensus_9465#1 AATGTCAAGATTCCATCGAATTCAGATGTTCAATATCCA-GCTTTATTGATTTTAA-CTG 156 * * ** * ** *** consensus_9465#2 TACATTCAAGGAGGTAGTAATGGCGGACTT--TTAGTTTGTGCCTGTTGCAA-TCAACGA 194 consensus_9465#3 TACATTCAAGGAGGTAGTAATGGCGGACTT--CTAGTTTGTGC-TGTTGCAA-TCAACGA 81 consensus_9465#0 TACATTCAAGGAGGTAGTAATGGCGGACTT--TTAGTTTGTGCCTGTTGCAA-TCAACGA 234 consensus_9465#1 CAGAT-CATGATGATCGTGTTGTTCCATTACATTCATTTAAATTTATTGCCACTTTACAA 215 * ** ** * * * ** ** * * * *** * **** * * ** * consensus_9465#2 CCTGATTTAT-TTAAAGCTGCTGTTGCTCAAGTTCCAGTATG---CGACCTTATT---AG 247 consensus_9465#3 CCTGATTTAT-TTAAAGCTGCTGTTGCTCAAGTTCCAGTATG---CGACCTTAT----AG 133 consensus_9465#0 CCTGATTTAT-TTAAAGCTGCTGTTGCTCAAGTTCCAGTATG---CGACCTTATT---AG 287 consensus_9465#1 GAAAAATTATGTCACAACTGTCGTCAAACAAACCCTATTCTGATTCGAATTGAGCAAAAG 275 * **** * * * *** ** *** * * * ** *** * * ** consensus_9465#2 ATTCCACAAATTTA---CAATTGGACAT----GCCTGGAAAAGTGATTATGGAGAT---- 296 consensus_9465#3 ATTC-ACAA--TTA---CAT---GACAT----GCT----GAAGTGAT-ATG-AGAT---- 170 consensus_9465#0 ATTCCACAAATTTA---CAATTGGACAT----GCCTGGAAAAGTGATTATGGAGAT---- 336 consensus_9465#1 GCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATATAC 335 * *** * ** **** * * * * ** * ** consensus_9465#2 -CCTGATAATAAAA---AGGATTTCCCATACTTGATGCG-GTAATCCATTTCTAAATCAT 351 consensus_9465#3 -C-TGATA-TAAAG---A------------------------------------------ 182 consensus_9465#0 -CCTGATAATAAAA---AGGATTTCTCATACTTGATGCGCATTTCCCCACTCCATAATGT 392 consensus_9465#1 TCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATAAAATGGATTGTTATAGCAG 395 * * * *** * consensus_9465#2 CCATTCATTTTC---TATTT---ATGGGACATTTTCATGTTTAT-GATT----TAACTCG 400 consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 CAAGATTCCATC---GAATTCAGATGTTCAATATCCAGCTTTATTGATT----TTAACTG 445 consensus_9465#1 TTACTGGTCTTTGGATTTTTGGCACTTAATATCCTCGTCACTGTTGTCAATAATATCTAT 455 consensus_9465#2 TACTTAATCGCAACTGCTGTGATCGATTTAAA-CATTTCTATTCCATGTACATCAATTAG 459 consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 CAGATCATGATGATCGTGTTGTTCCATTACAT-TCATTTAAATTTATTGCCACTTTACAA 504 consensus_9465#1 AGGTTCATTTTACTAACTGGCCTTGATTTGATTCATATTAAGATCTTTTGTGGTGCTTTA 515 consensus_9465#2 TTGATAACCTTTTGTGATTAAATTTCGTGAACACCCTCT-TATAAACC------------ 506 consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 GAAAAATTATGTCACAACTGT-CGTCAAACAAACCCTAT-TCTGATTCGAATTGAGCANA 562 consensus_9465#1 TTTATTATCATGAATATTACTATCCCCTGATGACTTAATATGTAATACATCATTCTTGGC 575 consensus_9465#2 ------------------------------------------------------------ consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 AGGCTGGACATGGACAAGGCAAACCAACATCAAAATCAATCAACGAGGTAGTGGATATAT 622 consensus_9465#1 TTTCATATTTAGTTCATGTAACGAAAACAAATTTATACATTTGTTATGACGTATTAAAGA 635 consensus_9465#2 ------------------------------------------------------------ consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 ACTCCTTCTTACAAACCGCAATGTCACTCACATGGAAAGAATANAATGGATTGTTATAGC 682 consensus_9465#1 ACGGA------------------------------------------------------- 640 consensus_9465#2 ------------------------------------------------------------ consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 AGNTACTGGTCTTTGGATTTTGGCACTTATATNCTCGTACTGGTGNCAATATATCTATAG 742 consensus_9465#1 ------------------------------------------------------------ consensus_9465#2 ------------------------------------------------------------ consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 TTCATTTACTACTGGCCTGATTGATCATATAGATCTTNTGGGGCTTATTATATCAGATAT 802 consensus_9465#1 ------------------------------------------------------------ consensus_9465#2 ------------------------------------------------------------ consensus_9465#3 ------------------------------------------------------------ consensus_9465#0 ACTACCCTGAGACTAATTGNATACATATCTGGCTTCAATTANTCAGTACGAACAATTATC 862 consensus_9465#1 ------------------------------------------------------------ consensus_9465#2 --------------- consensus_9465#3 --------------- consensus_9465#0 ATTGTTGACGATAGA 877 consensus_9465#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||