These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1541 fasta sequence [CTGACTGATGTGAAATGTGGTGACTTGTACTGATTGACACGTACCGAGTCGTAAGTTAATGATGACTGACTTACTTAGTCGGACGACTCAATCAGGACTTCCAGCCGATATTCGTATGCTTGAACCCTACGTTACATCAATTTAAGGAAACTGATATCTTTCACTCACGTTAAGTGTGACTCAGAGCCGTGTTTATGAATTGGCACTTTGTCACTGAGTCGCATCTACAATAATATTTTGATTATACGCCAGTGAGAATGATGCGACTTAATCTAGATCAGTGTTCAGTTATTTGTTCATTTCAAGGTACACAGGACACTTAGTACTTGAATCAAATAAGAACAAAATTTATATTATGTTTGTATTTGGTATTTGTAAGGATGTGCTTGCATCAGTGAGGGTGTTAATTGGTTTTTATCCAATAAAACTGTTTTTCATTATCATGGTACGGTAACCAAGACTGATAAACAGAACTCTTTCTTTACTTGCAGATTGTATTTTGAATATGTCTGAAAAGAACGAAAGCAGCGATTAGCTGGTGTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTACTTACATAAAAAGCTACCATCTAAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAATCTCCCAATAAGAAACCCATGCGACTAGAAATCGTCGACGAACAAAAATTTGTACTGGATGATCCACACACATTTTATGTTTGGATCTACGAACCACCACCGGGACTTTTTACATGGTTGGCTGGTGCAGCTTTAATTATTGGTATTATACTATGCTGTTTATTTCCTATCTGGCCATCAGAATTACGCCAATGTGCATATTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTACTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAG-GCCAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTTCGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGCAAATCGAAAGTAAAGTCAACTAGTGATGTTTTCACTATTGATTTCGCCACGAGTAGTAGCAATACTAGTACTGGTACTGGTAGTGATGCTAATATTGTCCA] [+] EMBL CD131738 [CTGACTGATGTGAAATGTGGTGACTTGTACTGATTGACACGTACCGAGTCGTAAGTTAATGATGACTGACTTACTTAGTCGGACGACTCAATCAGGACTTCCAGCCGATATTCGTATGCTTGAACCCTACGTTACATCAATTTAAGGAAACTGATATCTTTCACTCACGTTAAGTGTGACTCAGAGCCGTGTTTATGAATTGGCACTTTGTCACTGAGTCGCATCTACAATAATATTTTGATTATACGCCAGTGAGAATGATGCGACTTAATCTAGATCAGTGTTCAGTTATTTGTTCATTTCAAGGTACACAGGACACTTAGTACTTGAATCAAATAAGAACAAAATTTATATTATGTTTGTATTTGGTATTTGTAAGGATGTGCTTGCATCAGTGAGGGTGTTAATTGGTTTTTATCCAATAAAACTGTTTTTCATTATCATGGTACGGTAACCAAGACTGATAAACAGAACTCTTTCTTTACTTGCAGATTGTATTTTGAATATGTCTGAAAAGAACGAAAGCAGCGATTAGCTGGTGTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTACTTACATAAAAA ] [+] EMBL BF936980 [ ACGAAAGCAGCGATTAGCTGGGGTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTACTTACATAAAAAGCTACCATCTAAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAATCTCCCAATAAGAAACCCATGCGACTAGAAATC ] [-] EMBL BG932637 [ GCTAGATCAAATGACGATGCGAACACAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCATGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCATAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCGTGATTCTAAATCACCCAAATTTGGCATTTTATCGTCTATCTCCCCC ] [+] EMBL CD170413 [ GTTTCAGAAGCAAATGTTACAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATG ] [-] EMBL CD120821 [ TTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGA ] [-] EMBL CD120839 [ TTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGA ] [+] EMBL AI977199 [ CCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAATCTCCCAATAAGAAACCCATGCGACTAGAAATCGTCGACGAACAAAAATTTGTACTGGATGATCCACACACATTTTATGTTTGGATCTACGAACCACCACCGGGACTTTTTACATGGTTGGCTGGTGCAGCTTTAATTATTGGTATTATACTATGCTGTTTATTTCCTATCTGGCCATCAGAATTACGCCAATGTGCATATTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTACTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAG GCCAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTTCGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGCAAATCGAAAGTAAAGTCAACTAGTGATGTTTTCACTATTGATTTCGCCACGAGTAGTAGCAATACTAG ] [+] EMBL CD147797 [ TTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTACTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAGTGCCAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTTCGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGCAAATCGAAAGTAAAGTCAACTAGTGATGTTTCCACTATTGATTTCGCCACGAGTAGTAGCAATACTAGTACTGGTACTGGTAGTGATGCTAATATTGTCCA] consensusID : consensus_9476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [ATTCGGCACGAGGAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAACTTACTGATGGAAAGATTNGTCTCAGTAAAATGTTGTCG] [+] EMBL CD077904 [ATTCGGCACGAGGAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAACTTACTGATGGAAAGATTNGTCTCAGTAAAATGTTGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9476#0 CTGACTGATGTGAAATGTGGTGACTTGTACTGATTGACACGTACCGAGTCGTAAGTTAAT 60 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 GATGACTGACTTACTTAGTCGGACGACTCAATCAGGACTTCCAGCCGATATTCGTATGCT 120 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TGAACCCTACGTTACATCAATTTAAGGAAACTGATATCTTTCACTCACGTTAAGTGTGAC 180 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TCAGAGCCGTGTTTATGAATTGGCACTTTGTCACTGAGTCGCATCTACAATAATATTTTG 240 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 ATTATACGCCAGTGAGAATGATGCGACTTAATCTAGATCAGTGTTCAGTTATTTGTTCAT 300 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TTCAAGGTACACAGGACACTTAGTACTTGAATCAAATAAGAACAAAATTTATATTATGTT 360 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TGTATTTGGTATTTGTAAGGATGTGCTTGCATCAGTGAGGGTGTTAATTGGTTTTTATCC 420 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 AATAAAACTGTTTTTCATTATCATGGTACGGTAACCAAGACTGATAAACAGAACTCTTTC 480 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TTTACTTGCAGATTGTATTTTGAATATGTCTGAAAAGAACGAAAGCAGCGATTAGCTGGT 540 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 GTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTAC 600 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TTACATAAAAAGCTACCATCTAAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTC 660 consensus_9476#1 ---------ATTCGGCACGAGGAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTC 51 * * * ************************************** consensus_9476#0 GTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGAT 720 consensus_9476#1 GTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGAT 111 ************************************************************ consensus_9476#0 GCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTT 780 consensus_9476#1 GCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTT 171 ************************************************************ consensus_9476#0 CAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAA 840 consensus_9476#1 CAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAA 231 ************************************************************ consensus_9476#0 GATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGT 900 consensus_9476#1 GATGCGAAATCATTGAAGCCTAAGCTGAAAAA-CTTACTGATGGAAAGATTNGTCTCAGT 290 ******************************** ****************** **** consensus_9476#0 AAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAA 960 consensus_9476#1 AAAA-TGTTGTCG----------------------------------------------- 302 **** ******** consensus_9476#0 TCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAA 1020 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TCTCCCAATAAGAAACCCATGCGACTAGAAATCGTCGACGAACAAAAATTTGTACTGGAT 1080 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 GATCCACACACATTTTATGTTTGGATCTACGAACCACCACCGGGACTTTTTACATGGTTG 1140 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 GCTGGTGCAGCTTTAATTATTGGTATTATACTATGCTGTTTATTTCCTATCTGGCCATCA 1200 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 GAATTACGCCAATGTGCATATTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTA 1260 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 CTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAGGC 1320 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 CAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTT 1380 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 CGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGC 1440 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 AAATCGAAAGTAAAGTCAACTAGTGATGTTTTCACTATTGATTTCGCCACGAGTAGTAGC 1500 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 AATACTAGTACTGGTACTGGTAGTGATGCTAATATTGTCCA 1541 consensus_9476#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||