These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1416 fasta sequence [GGGTAATTCATACATCAAATACACCTACCTTAAATAGATTAGATGAATTTAAACGAAACTGTGAACGAGCAGCAAGACAATGGGAACAAGTTATTAATAATAAAAATGGCAATAAATTGACAGAAGTAATGGCTCATAGAATAGCTGAATTGGAATCCTGTGTAAAAGAGGCTGAAAATTTATTAAAATTATTTGTAGCAGAAATTCGTGATGTACGTGCAACGGCTGATTATTGGTCGAAGAAAACAACAAATTTAGAAAAATCTTATCATAATCTACATGGAAAAGTTAAAGATTATCGTTTTAATGCTAAACAAAGTGAAAATGATTATTTAAAAGCGATGGAAGAACGTGAATACATTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAACGTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATGCAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAAATGAACTTTCACGGAAAATTATACATTTGGAATCAACCTTACATAAATTAAAAAATCGAACAGAATACACATATAGGCAAAAACATTCATCTCATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATGAATCTGAATATGTACTAAGTGACTTCGGTTCATTAGATCGAAACCAAAAGGTTTACACTATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAGTTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATCAGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTCTTTAAACAGTGCAAAAATAAGTGAAAATAATATCAATACACAGGGATCAC-AAGGTTCACTTGATGATCAAAATATTGATTTGTCACCAACAACAATTGGTAATGAAGAAATTCATCATCAATCAGAACATTTAATACAGCATCGATCAGTTGAAAAAAGTATGGATGATTTATCGGATACTTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAGGGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTATCAATATTCTCCTAGTCAACATATAAAGTCATTAAAGAAAGATGCTTTATCTACAGAAGATGAGTCATTAAAACATAGATCTCAAGTACAAGTCGTTGTTGGACGATCACCATCAACGGAAAAAAAAAGAAGAGCAATTCATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATNCACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGAT] [+] EMBL CD064556 [GGGTAATTCATACATCAAATACACCTACCTTAAATAGATTAGATGAATTTAAACGAAACTGTGAACGAGCAGCAAGACAATGGGAACAAGTTATTAATAATAAAAATGGCAATAAATTGACAGAAGTAATGGCTCATAGAATAGCTGAATTGGAATCCTGTGTAAAAGAGGCTGAAAATTTATTAAAATTATTTGTAGCAGAAATTCGTGATGTACGTGCAACGGCTGATTATTGGTCGAAGAAAACAACAAATTTAGAAAAATCTTATCATAATCTACATGGAAAAGTTAAAGATTATCGTTTTAATGCTAAACAAAGTGAAAATGATTATTTAAAAGCGATGGAAGAACGTGAATACATTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAACGTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATGCAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAA ] [+] EMBL BF936776 [ TTAAAAGCGATGGAAGAACGTGAATACATTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAACGTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATGCAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAAATGAACTTTCACGGAAAATTATACATTTGGAATCAACCTTACATAAATTAAAAAATCGAACAGAATACACATATAGGCAAAAACATTCATCTCATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATGAATCTGAATATGTACTAAGTGACTTCGGTTCATTAGATCGAAACCAAAAGGTTTACACTATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAGTTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATCAGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTCTTTAAACAGTGCAAAAATAAGTGAAAATAATATCAATACACAGGGATCAC AAGGTTCACTTGATGATCAAAATATTGATTTGTCAC ] [+] EMBL CD148696 [ CATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATGAATCTGAATACGTACTAAGTGACTTCGGTTCATTAGACCGAAACCAAAAGGTTTACACTATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAGTTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATCAGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTCTTTAACAAGTGCAAAAATAAGTGAAAATAATATCAATACACA GGATCACAAAGGTTCACTTGATGATCAAAATATTGATTTGTCACCAACAACAATTGGTAATGAAGAAATTCATCATCAATCAGAACATTTAATACAGCATCGATCAGTTGAAAAAAGTATGGATGATTTATCGGATACTTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAGGGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTA ] [+] EMBL CD142660 [ TGAAAAAAGTATGGATGATTTATCGGATACTTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAGGGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTATCAATATTCTCCTAGTCAACATATAAAGTCATTAAAGAAAGATGCTTTATCTACAGAAGATGAGTCATTAAAACATAGATCTCAAGTACAAGTCGTTGTTGGACGATCACCATCAACGGAAAAAAAAAGAAGAGCAATTCATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATNCACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGAT] consensusID : consensus_9478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 871 fasta sequence [AATTCGGCACGACGGAANAAGAGCAATTGATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCCACTGTGAAATTGAATCGTCAACTAAATCGACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGATATGCAACATACAAATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTTATTTTCCTCAATCATATTCATCACATCATTTAAAAATTCCGGAAAAAACATGTTTGGAAAGTAGTCTAGATCATATCAATCTTGAAGTGGATCGTTTACGAGATTGTATCAAATTATTAAATCCATAAATATTAGTGTGTTGTGATGATTTAAACCAAAATTTAAACAAAAATAAAACATATATGGACAGCTTTCCTTTTTCTTTTTGTTCTTTTTTACATATACCATACATTCAAATATATTAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTTATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATATATTACTACTTATAAACATCTTTAAAGAAAACCACTACTGACCCAAAAATTATCCCAATACACATATCAAT] [+] EMBL CD081702 [AATTCGGCACGACGGAANAAGAGCAATTGATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCCACTGTGAAATTGAATCGTCAACTAAATCGACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGATATGCAACATACAAATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTTATTTTCCTCAATCATATTCATCACATCATTTAAAAATTCCGGAAAAAACATGTTTGGAAAGTAGTCTAGATCATATCAATCTTGAAGTGGATCGTTTACGAGATTGTATCAAATTATTAAATCCATAAATATTAGTGTGTTGTGATGATTTAAACCAAAATTTAAACAAAAATAAAACATATATGGACAGCTTTCCTTTTTCTTTTTGTTCTTTTTTACATATACCATACATTCAAATATATTAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTTATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATATATTACTACTTATAAACATCTTTAAAGAAAACCACTACTGACCCAAAAATTATCCCAATACACATATCAAT] [+] EMBL CD166726 [ CATTCACAT AAAAGTATACATATAAGAAAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCC ] [+] EMBL AI976708 [ TTACATAATTCTAAACGTTTAAAATGACTGGAAAGAGATTATTATACATCTTGACAAAATTTAAGTACAAAACCTTACTTCACTGTGAAATTGAATCGTCAACTAAATCTACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGATATGCAACATACAAATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTTATTTTCCTCAATCATATTCATCACATCATTTA ] [+] EMBL SM9291 [ AATATATTAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTTATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATAT ] consensusID : consensus_9478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [CACGGACGCATCACATAAAAAGTATACATATATAGAAAATATTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCC] [+] EMBL CD166722 [CACGGACGCATCACATAAAAAGTATACATATATAGAAAATATTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9478#1 ------------------------------------------------------AATTCG 6 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 GGGTAATTCATACATCAAATACACCTACCTTAAATAGATTAGATGAATTTAAACGAAACT 60 consensus_9478#1 GCACGACGGAANAAGAGCAATTGATACCAGTCATTCACATAAAAAGTATACATATA-AGA 65 consensus_9478#2 ------------------------CACGGACGCATCACATAAAAAGTATACATATATAGA 36 consensus_9478#0 GTGAACGAGCAGCAAGACAATGGGAACAAGTTATTAATAATAAAAATGGCAATAAATTGA 120 ** * * * **** * *** * ** consensus_9478#1 ---AAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAAC-AGCCTCCGATTT 121 consensus_9478#2 ---AAATATT-GATCAACCTGTATTGCCATCCGTATTCAGTACCAAC-AGCCTCCGATTT 91 consensus_9478#0 CAGAAGTAATGGCTCATAGAATAGCTGAATTGGAATCCTGTGTAAAAGAGGCTGAAAATT 180 ** ** * * *** ** ** * ** * ** ** ** ** * ** consensus_9478#1 AATAGACATCGTCC--AGCATCAGTCTCTGGT-TATTTGGA-----TGAATGCGCATTAA 173 consensus_9478#2 AATAGACATCGTCC--AGCATCAGTCTCTGGT-TATTTGGA-----TGAATGCGCATTAA 143 consensus_9478#0 TATTAAAATTATTTGTAGCAGAAATTCGTGATGTACGTGCAACGGCTGATTATTGGTCGA 240 ** * ** * **** * * ** * ** ** * *** * * * consensus_9478#1 ACAGATCATATGATTTATA----CCCTGTACCAACTT---CAGCTAGACCAAGTACCAGT 226 consensus_9478#2 ACAGATCATATGATTTATA----CCCTGTACCAACTT---CAGCTAGACCAAGTACCAGT 196 consensus_9478#0 AGAAAACAACAAATTTAGAAAAATCTTATCATAATCTACATGGAAAAGTTAAAGATTATC 300 * * * ** ***** * * * * ** * * * ** * * consensus_9478#1 -TTTGGACATTTACATAATTCTAAACG----TTTAAAATCACTGGAAAGAGATTATTATA 281 consensus_9478#2 -TTTGGACATTTACATAATTCTAAACG----TTTAAAATCACTGGAAAGAGATTATTATA 251 consensus_9478#0 GTTTTAATGCTAAACAAAGTGAAAATGATTATTTAAAAGCGATGGAAGAACGTGAATACA 360 *** * * * ** * *** * ******* * ***** * * * ** * consensus_9478#1 CATC------TTGTCAAAATTTAAGTACAAAACCTTACTCCACTGTGAAATTGAATCGTC 335 consensus_9478#2 CATC------TTGTCAAAATTTAAGTACAAAACCTTACTCC------------------- 286 consensus_9478#0 TTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAAC 420 * * ** * * * * * ** * * * consensus_9478#1 AACTAAATCGACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGAT-ATG 394 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 GTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATG 480 consensus_9478#1 CAACATACAA--ATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTT 452 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 CAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAAATGAACTTTCACGGAAAA 540 consensus_9478#1 ATTTTCCTCAATCATATTCATCACATCATTTAAAAATTC---CGGAAAAAACATGTTTGG 509 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 TTATACATTTGGAATCAACCTTACATAAATTAAAAAATCGAACAGAATACACATATAGGC 600 consensus_9478#1 AAAGTAGTCTAGATCATATCAATCTTGAAGTGGATCGTTTACGAGATTGTATCAAATTAT 569 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 AAAAACATTCATCTCATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATG 660 consensus_9478#1 TAAATCCATAAATATTAGTGTGTTGTGATGATTTAAACCAAAATTTAAACAAAAATAAAA 629 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 AATCTGAATATGTACTAAGTGACTTCGGTTCATTAGATCGAAACCAAAA--GGTTTACAC 718 consensus_9478#1 CATATATGGACAGCTTTCCTTTTTCTTTTTGTTCTTTTTTACATATACCATACATTCAAA 689 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 TATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAG 778 consensus_9478#1 TATAT-TAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTT 748 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 TTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATC 838 consensus_9478#1 ATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATATATTACTA 808 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 AGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTC 898 consensus_9478#1 CTTATAAA---CATCTTTAAAGAAAACCACTACTGACCCA-AAAATTATCCCAATACACA 864 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 TTTAAACAGTGCAAAAATAAGTGAAAATAATATCAATACACAGGGATCACAAGGTTCACT 958 consensus_9478#1 TATCAAT----------------------------------------------------- 871 consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 TGATGATCAAAATATTGATTTGTCACCAACAACAATTGGTAATGAAGAAATTCATCATCA 1018 consensus_9478#1 ------------------------------------------------------------ consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 ATCAGAACATTTAATACAGCATCGATCAGTTGAAAAAAGTATGGATGATTTATCGGATAC 1078 consensus_9478#1 ------------------------------------------------------------ consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 TTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAG 1138 consensus_9478#1 ------------------------------------------------------------ consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 GGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTATCAATATTCTCC 1198 consensus_9478#1 ------------------------------------------------------------ consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 TAGTCAACATATAAAGTCATTAAAGAAAGATGCTTTATCTACAGAAGATGAGTCATTAAA 1258 consensus_9478#1 ------------------------------------------------------------ consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 ACATAGATCTCAAGTACAAGTCGTTGTTGGACGATCACCATCAACGGAAAAAAAAAGAAG 1318 consensus_9478#1 ------------------------------------------------------------ consensus_9478#2 ------------------------------------------------------------ consensus_9478#0 AGCAATTCATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATNCACC 1378 consensus_9478#1 -------------------------------------- consensus_9478#2 -------------------------------------- consensus_9478#0 TGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGAT 1416 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||