These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence [CTATTTCAGTTTTCCTTCACTGACGACAGTATTACTAATAATCATAAGATTCTGTATCGCGCAATATTGTCCGAATGGATCCTTGAAATAACACTTTTTGGAAAAAAAGTTAACTTATTCAAGAAGATTCGTACATCTGTTTATGTGTAATATCAGTTGGTAGTGGAAAATATGAAAAAAAATAATTCGCCTTATTTAAAACTTATCAACTGAACTTGCCCATATCCTGGTGTTTATTCTACCAAGCAAGCAACTGATTTACGAGTTTGACGTAAACCAGGATTATTGAATCTTGAAACCGATTTCAAGGCGGCTTTATCCAGAGATTGGTTCTAATTGTTGAATCACAAGAAGCTAGGAGTTATCTAACCAGCTTGTGACGGAAACTATCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCACACCATTTAATCTAATTAACACAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCACTATGATCGNTAGAACCAACTACTTCAGAGTCCANAACCATACGAACCAAGTCAAGTAATTATCTNTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAAACATACANNAAGCTCGGGNTCCATAGAGGANNNAACGAAGAANATACACTAGTACACGAGAAACTGAAATGANACGAGCGTACTTATTTNCACTAGTGTTTTGAGGTCATTTATTNGTACTATATANTGTACCATATTATGCATAGTCA] [+] EMBL CD082009 [CTATTTCAGTTTTCCTTCACTGACGACAGTATTACTAATAATCATAAGATTCTGTATCGCGCAATATTGTCCGAATGGATCCTTGAAATAACACTTTTTGGAAAAAAAGTTAACTTATTCAAGAAGATTCGTACATCTGTTTATGTGTAATATCAGTTGGTAGTGGAAAATATGAAAAAAAATAATTCGCCTTATTTAAAACTTATCAACTGAACTTGCCCATATCCTGGTGTTTATTCTACCAAGCAAGCAACTGATTTACGAGTTTGACGTAAACCAGGATTATTGAATCTTGAAACCGATTTCAAGGCGGCTTTATCCAGAGATTGGTTCTAATTGTTGAATCACAAGAAGCTAGGAGTTATCTAACCAGCTTGTGACGGAAACTATCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCACACCATTTAATCTAATTAACACAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCACTATGATCGNTAGAACCAACTACTTCAGAGTCCANAACCATACGAACCAAGTCAAGTAATTATCTNTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAAACATACANNAAGCTCGGGNTCCATAGAGGANNNAACGAAGAANATACACTAGTACACGAGAAACTGAAATGANACGAGCGTACTTATTTNCACTAGTGTTTTGAGGTCATTTATTNGTACTATATANTGTACCATATTATGCATAGTCA] consensusID : consensus_948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [TCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCCCCCCATTTAATTTAATTAACCCAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCCCTATGATCGTAAGAACCAACTACTTCAGAGTCCAAAACCATACGAACCAAGTCAAGTAATTATCTTTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAACATAACAAAAAGCTCGGGTCCATAAGAGGAAAAAACGAAAGAAAAATAACCCTAGTAACCCGAGAAAACTGAAAATGAAAACGATGCGTCACTATATTTTCCACTAAGTGTTTTTGAGGTCATTTTATTTGTTAACTAATATCAGTGTACCCAATATTTATTGCAATAGGTCATTAT] [-] EMBL CD075624 [TCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCCCCCCATTTAATTTAATTAACCCAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCCCTATGATCGTAAGAACCAACTACTTCAGAGTCCAAAACCATACGAACCAAGTCAAGTAATTATCTTTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAACATAACAAAAAGCTCGGGTCCATAAGAGGAAAAAACGAAAGAAAAATAACCCTAGTAACCCGAGAAAACTGAAAATGAAAACGATGCGTCACTATATTTTCCACTAAGTGTTTTTGAGGTCATTTTATTTGTTAACTAATATCAGTGTACCCAATATTTATTGCAATAGGTCATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_948#0 CTATTTCAGTTTTCCTTCACTGACGACAGTATTACTAATAATCATAAGATTCTGTATCGC 60 consensus_948#1 ------------------------------------------------------------ consensus_948#0 GCAATATTGTCCGAATGGATCCTTGAAATAACACTTTTTGGAAAAAAAGTTAACTTATTC 120 consensus_948#1 ------------------------------------------------------------ consensus_948#0 AAGAAGATTCGTACATCTGTTTATGTGTAATATCAGTTGGTAGTGGAAAATATGAAAAAA 180 consensus_948#1 ------------------------------------------------------------ consensus_948#0 AATAATTCGCCTTATTTAAAACTTATCAACTGAACTTGCCCATATCCTGGTGTTTATTCT 240 consensus_948#1 ------------------------------------------------------------ consensus_948#0 ACCAAGCAAGCAACTGATTTACGAGTTTGACGTAAACCAGGATTATTGAATCTTGAAACC 300 consensus_948#1 ------------------------------------------------------------ consensus_948#0 GATTTCAAGGCGGCTTTATCCAGAGATTGGTTCTAATTGTTGAATCACAAGAAGCTAGGA 360 consensus_948#1 ------------------------------------------------------------ consensus_948#0 GTTATCTAACCAGCTTGTGACGGAAACTATCTCGAAACTGCAATAACCCTTGCAATCAGA 420 consensus_948#1 -----------------------------TCTCGAAACTGCAATAACCCTTGCAATCAGA 31 ******************************* consensus_948#0 CAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATA 480 consensus_948#1 CAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATA 91 ************************************************************ consensus_948#0 ATCATGACTTCGCAAATATAGTTAACCTAAGCCACACCATTTAATCTAATTAACACAAGC 540 consensus_948#1 ATCATGACTTCGCAAATATAGTTAACCTAAGCCCCCCCATTTAATTTAATTAACCCAAGC 151 ********************************* * ********* ******** ***** consensus_948#0 ATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATT 600 consensus_948#1 ATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATT 211 ************************************************************ consensus_948#0 GAAAAAGAATTTCGGACTTGATTTCCACTATGATCGNTAGAACCAACTACTTCAGAGTCC 660 consensus_948#1 GAAAAAGAATTTCGGACTTGATTTCCCCTATGATCGTAAGAACCAACTACTTCAGAGTCC 271 ************************** ********* ********************** consensus_948#0 ANAACCATACGAACCAAGTCAAGTAATTATCTNTAAAAATCACTTCAACTAACCAGTCGA 720 consensus_948#1 AAAACCATACGAACCAAGTCAAGTAATTATCTTTAAAAATCACTTCAACTAACCAGTCGA 331 * ****************************** *************************** consensus_948#0 TCTGTTGAATCATATTGATGAAAACATACANNAAGCTCGGGNTCCATAGAGGANNNAACG 780 consensus_948#1 TCTGTTGAATCATATTGATGAAACATAACAAAAAGCTCGGGTCCATAAGAGGAAAAAACG 391 *********************** *** ********* * ****** **** consensus_948#0 AAGAANATACA---CTAGTA-CACGAGAAA-CTGAAAT--GANACGA-GCGTACTTAT-- 830 consensus_948#1 AAAGAAAAATAACCCTAGTAACCCGAGAAAACTGAAAATGAAAACGATGCGTCACTATAT 451 ** * * * * ****** * ******* ****** * **** **** *** consensus_948#0 -TTNCACTA-GTGTTTT-GAGGTCATTT-ATTNGT--ACTA-TAT-ANTGTACCATATTA 882 consensus_948#1 TTTCCACTAAGTGTTTTTGAGGTCATTTTATTTGTTAACTAATATCAGTGTACC-CAATA 510 ** ***** ******* ********** *** ** **** *** * ****** * ** consensus_948#0 TGCATAGTCA----------- 892 consensus_948#1 TTTATTGCAATAGGTCATTAT 531 * ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||