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Schistosoma mansoni
cluster # 9503 cluster # 9503       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9503#0 length = 803 sequences # 5  
consensus_9503#1 length = 696 sequences # 5  

consensusID : consensus_9503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 803
fasta sequence
                              [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATCACATGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCT]

[+] EMBL CD178613             [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATC                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD178471             [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCGTTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD178951             [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCGTTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD179089             [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD078727             [                                                                                                                                                                                                AAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTATCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCCCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACACCACATGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCT]


>consensus_9503#0 AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGT TAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAA CTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTG AATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCA TTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGT ACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTG CGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGC TTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATCACA TGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCCTA GTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAAC CTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTT GGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCAC AAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACG ATGCAGATTGTGGCAGAACTGCT



consensusID : consensus_9503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 696
fasta sequence
                              [TACGAGGCCANAATTCGGCACGAGGCGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT-A-AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA]

[+] EMBL CD082517             [TACGAGGCCANAATTCGGCACGAGGCGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTNTNTATGTGACTT ANAAAAAAAAGAAATCTTATTGAAGATAATTNTTGTACATAAATTATTTATTTTAGAACGAA                                ]
[-] EMBL CD076112             [                                                                       GGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTTAA AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAAn                              ]
[-] EMBL CD073189             [                                                                                   GATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAA                               ]
[-] EMBL AI395139             [                                                                                                                                                                                                                                                                                                                                                                           AACGCAAATACCAAG CCGGAGGAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395274             [                                                                                                                                                                                                                                                                                                                                                                            AAGC AATTCCCAGGCCGGAGGAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGCCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATCTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAA  ]


>consensus_9503#1 TACGAGGCCANAATTCGGCACGAGGCGGCACGAGGACATCTTCCTCCCACAGCTTCGCTT CGGAAACAACAGGACACTGGTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAAC CATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATG CCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAA ACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAG CCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGAT ATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTAC GATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCT TGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATT TCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGA CTTAAAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAA CGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9503#0      AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGT 60
consensus_9503#1      ----------------------------------TACGAGGCCANAATTCGGCAC-GAGG 25
                                                        * * * * **   * **   * *** 

consensus_9503#0      TAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAA 120
consensus_9503#1      CGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGA 85
                        * *** * *  * **        *         **  *  ** * **    **    *

consensus_9503#0      CTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTG 180
consensus_9503#1      TTCCTA---GTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTG 142
                       **  *   *   * * *  *  * *    *  *  * * **    **** *      **

consensus_9503#0      AATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCA 240
consensus_9503#1      TATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTA--ATCG 200
                       ** ****    *   *    **     *  ***     **** *   *** **   ** 

consensus_9503#0      TTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGT 300
consensus_9503#1      GCATATTCGT-TGGATTGATGTTCTTCAAATGTATGAAAAAACTGTA--ATTGTCAA--- 254
                          *      *    *  **  * ** *     **  * *  *     *   ***    

consensus_9503#0      ACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTG 360
consensus_9503#1      --ACTCAACCATCAAGCACA--AACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAG 310
                         * *  ** ***  ** *  * ** *  ** *  **   *        ** *  ** *

consensus_9503#0      CGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCT-CCACCTTCCATG 419
consensus_9503#1      AAA---CAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAG 367
                            *** * *   * *   *  * * *   * **    *  ***       *  * *

consensus_9503#0      CTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATCAC 479
consensus_9503#1      CAAATTACAA----GACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGAT 423
                      *    *  *     * *    *  *** **  **   *    ** *    *    *  * 

consensus_9503#0      A-TGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCC 538
consensus_9503#1      AGTGATG------------ACAGTAACCATACCGATATTA-AAATCAGTGCTTTAA---- 466
                      * ****             ****   *  * * ** *  * *   ** ** *** *    

consensus_9503#0      TAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGA 598
consensus_9503#1      -AGGTAGAAGAC---TCTTGTCC--GACAACTAAGTCTTTGGGCCTTT-CTTGTCAGCTA 519
                       **  * ** **   ** *  *    * *** *    * *   * *    ****     *

consensus_9503#0      ACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCG 658
consensus_9503#1      ACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCG 579
                      **     *   * * * * * *   *   **           * **  * *  * * ***

consensus_9503#0      TTGGATTGATGTTCTTCA-AATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAG 717
consensus_9503#1      CGTTGTGGACTTTTTATGTGACTTAAAAAAAAAGAAATCTTATTGAAGATAATTTTTGTA 639
                           * **  ** *     *  **  ******      ** *  **   **   *    

consensus_9503#0      CACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTA 777
consensus_9503#1      CATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA--- 696
                      ** ***          **   *  **   * *  ***** * *** * **    **    

consensus_9503#0      ACGATGCAGATTGTGGCAGAACTGCT 803
consensus_9503#1      --------------------------
                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)