These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 803 fasta sequence [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATCACATGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCT] [+] EMBL CD178613 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATC ] [+] EMBL CD178471 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCGTTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT ] [+] EMBL CD178951 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCGTTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT ] [+] EMBL CD179089 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT ] [+] EMBL CD078727 [ AAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTATCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCCCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACACCACATGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCT] consensusID : consensus_9503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 696 fasta sequence [TACGAGGCCANAATTCGGCACGAGGCGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT-A-AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA] [+] EMBL CD082517 [TACGAGGCCANAATTCGGCACGAGGCGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTNTNTATGTGACTT ANAAAAAAAAGAAATCTTATTGAAGATAATTNTTGTACATAAATTATTTATTTTAGAACGAA ] [-] EMBL CD076112 [ GGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTTAA AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAAn ] [-] EMBL CD073189 [ GATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAA ] [-] EMBL AI395139 [ AACGCAAATACCAAG CCGGAGGAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA] [-] EMBL AI395274 [ AAGC AATTCCCAGGCCGGAGGAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGCCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATCTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9503#0 AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGT 60 consensus_9503#1 ----------------------------------TACGAGGCCANAATTCGGCAC-GAGG 25 * * * * ** * ** * *** consensus_9503#0 TAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAA 120 consensus_9503#1 CGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGA 85 * *** * * * ** * ** * ** * ** ** * consensus_9503#0 CTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTG 180 consensus_9503#1 TTCCTA---GTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTG 142 ** * * * * * * * * * * * * ** **** * ** consensus_9503#0 AATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCA 240 consensus_9503#1 TATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTA--ATCG 200 ** **** * * ** * *** **** * *** ** ** consensus_9503#0 TTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGT 300 consensus_9503#1 GCATATTCGT-TGGATTGATGTTCTTCAAATGTATGAAAAAACTGTA--ATTGTCAA--- 254 * * * ** * ** * ** * * * * *** consensus_9503#0 ACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTG 360 consensus_9503#1 --ACTCAACCATCAAGCACA--AACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAG 310 * * ** *** ** * * ** * ** * ** * ** * ** * consensus_9503#0 CGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCT-CCACCTTCCATG 419 consensus_9503#1 AAA---CAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAG 367 *** * * * * * * * * * ** * *** * * * consensus_9503#0 CTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATCAC 479 consensus_9503#1 CAAATTACAA----GACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGAT 423 * * * * * * *** ** ** * ** * * * * consensus_9503#0 A-TGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCC 538 consensus_9503#1 AGTGATG------------ACAGTAACCATACCGATATTA-AAATCAGTGCTTTAA---- 466 * **** **** * * * ** * * * ** ** *** * consensus_9503#0 TAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGA 598 consensus_9503#1 -AGGTAGAAGAC---TCTTGTCC--GACAACTAAGTCTTTGGGCCTTT-CTTGTCAGCTA 519 ** * ** ** ** * * * *** * * * * * **** * consensus_9503#0 ACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCG 658 consensus_9503#1 ACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCG 579 ** * * * * * * * * ** * ** * * * * *** consensus_9503#0 TTGGATTGATGTTCTTCA-AATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAG 717 consensus_9503#1 CGTTGTGGACTTTTTATGTGACTTAAAAAAAAAGAAATCTTATTGAAGATAATTTTTGTA 639 * ** ** * * ** ****** ** * ** ** * consensus_9503#0 CACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTA 777 consensus_9503#1 CATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA--- 696 ** *** ** * ** * * ***** * *** * ** ** consensus_9503#0 ACGATGCAGATTGTGGCAGAACTGCT 803 consensus_9503#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||