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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 998 fasta sequence
[AAGGAACTTACTGTTGTTATGGTCTTAGTTTTGGTGGTTCTGATTGGTGTGAACTTAAATTTAAAACCTGTGAATCGGGCGAAGATCTTCCAGATGTTTTGCAACATGTCAAATTCAGTTCAATTTCGTGGACAAAGGATGAGAAAGGTGTTTTTTACTGTATGTACCCTCAGCATGAAGGTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGAATATTCAAGGAGAAGTGTCTGATTGTGGGAGATACTTATTGGTAACTTTGTATGATGGATGTGAACCTAATAACCAGCTTTTCTACTGTGATCTTGAAAAAGTCGATCTAGTTGTCAAAAAAAAACTTGACTTGATCCCAATCGTCGATCGCTTTGAAGCTGTCTTTTAATTTGTGACAAATGAGGGTGATTCATTTGTATTTCGCACCAACTTAGATGCTCCGATGTACAAGATAATCAAAATCAGTCTTTCTAATTGCGATCGTCAAAATTGGGAAGATCTTATCCATCACAATATGGAGTCACTCTTAGAAAGTGCAGTTTGTGTGAATGAGGATAAATTAGTCATTTGTCGTCTGAAGGATGTTAAGAGCTGCTTATCCGTGCACAAACTACTCACTGGGGAGAAGATATCCGATATTGATATTTCACTTGGGTACGTCGCTAATGTAACTGGACGCAAACGTGATGATGAAGCTTTCATTCATTTTACATCGTTCCTCACTCCTGGAATAATTTACTCCTATGATTTTTCTCACTCCCATCCAAAATTGGAGGTTATCAGAGAGTCGAAGATTCGGGATGTAGACTTAAATCAATTTGAAGTGAAACAAGTATTCTATGAGAGTAAAGATAAAACTGTAGTTCCTATGTTTCTTATTTTACCTAAAAACTTTCAACAAAACAACTCGGCACCG]
[+] EMBL AI067812 [AAGGAACTTACTGTTGTTATGGTCTTAGTTTTGGTGGTTCTGATTGGTGTGAACTTAAATTTAAAACCTGTGAATCGGGCGAAGATCTTCCAGATGTTTTGCAACATGTCAAATTCAGTTCAATTTCGTGGACATAGGATGACAAAGGTGTTTTTTACTGTATGTACCCTCAGCATGAAGGTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGCAACGACCGGATCAACCTACTTGGAATATTCAATGAGAAGTGTCTGATTGTGGGAGATACGTAATGGTAACTTTGTATGATGGATGTCAACCTAATAACCAGCTTTTCTACTGTGATCTTGAAAA ]
[-] EMBL BG930460 [ TTACTGTTGTTATGGTCTAAGTTTGGGTGGTTCTGATTGGTGTGAACTTAAATTTAAAACCTGTGAATCGGGCGAAGATCTTCCAGATGTTTTGCAACATGTCAAATTCAGTTCAATTTCGTGGACAAAGGATGAGAAAGGTGTTTTTTACTGTATGTACCCTCAGCATGAAGGTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGAATATTCAAGGAGAAGTGTCTGATTGTGGGAGATACTTATTGGTAACTTTGTATGATGGATGTGAACCTAATAACCAGCTTTTCTACTGTGATCTTGAAAAAGTCGATCTAGTTGTCAAAAAAAAACTTGACTTGA CCC ACCATCGATCaca ]
[+] EMBL CD202672 [ TCTTCCAGATGTTTTGCAACATGTCAAATTCAGTTCAATTTCGTGGACAAAGGATGAGAAAGGTGTTTTTTACTGTATGTACCCTCAGCATGAAGGTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGAATATTCAAGGAGAAGTGTCTGATTGTGGGAGATACTTATTGGTAACTTTGTATGATGGATGTGAACCTAATAACCAGCTTTTCTACTGCGATCTTGAAAAAGTCGATCTAGTTGT ]
[-] EMBL BG930670 [ cGGACAAAGGATGAGAAAGGTGTTTTTTACTGTATGTACCCTCAGCATGAAGGTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGAATATTCAAGGAGAAGTGTCTGATTGTGGGAGATACTTATTGGTAACTTTGTATGATGGATGTGAACCTAATAACCAGCTTTTCTACTGTGATCTTGAAAAAGTCGATCTAGTTGTCAAAAAAAAACTTGACTTGAc ]
[+] EMBL CD202939 [ TAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTTCTTGGAATATTCAAGGAGAAGTGTCTGATTGTGGGAGATACTTATTGGTAACTTTGTATGATGGATGTGAACCTAATAACCAGCTTTTCTACTGTGATCTTGAAAAAGTCGATCTAGTTGTCAAAAAAAAACTTGACTTGATCCCAATCGTCGATCGCTTTGAAGCTGTCTTTTAATT ]
[+] EMBL CD182861 [ ATTGTGGGAGATACTTATTGGTAACTTTGTATGATGGATGTGAACCTAATAACCAGCTTTTCTACTGTGATCTTGAAAAAGTCGATCTAGTTGTC AAAAAAAACTTGACTTGATCCCAATCGTCGATCGCTTTGAAGCTGTCTATGAATATGTGACAAATGAGGGTGATTCATTTGTATTTCGCACCAACTTAGATGCTCCGATGTACAAGATAATCAAAA ]
[+] EMBL AW017101 [ ATGAGGGTGATTCATTTGTATTTCGCACCAACTTAGATGCTCCGATGTACAAGATAATCAAAATCAGTCTTTCTAATTGCGATCGTCAAAATTGGGAAGATCTTATCCATCACAATATGGAGTCACTCTTAGAAAGTGCAGTTTGTGTGAATGAGGATAAATTAGTCATTTGTCGTCTGAAGGATGTTAAGAGCTGCTTATCCGTGCACAAACTACTCACTGGGGAGAAGATATCCGATATTGATATTTCACTTGGGTACGTCGCTAATGTAACTGGACGCAAACGTGATGATGAAGCTTTCATTCATTTTACATCGTTCCTCACTCCTGGAATAATTTACTCCTATGATTTTTCTCACTCCCATCCAAAATTGGAGGTTATCAGAGAGTCGAAGATTCGGGATGTAGACTTAAATCAATTTGAAGTGAAACAAGTATTCTATGAGAGTAAAGATAAAACTGTAGTTCCTATGTTTCTTATTTTACCTAAAAACTTTCAACAAAACAACTCGGCACCG]
[+] EMBL CD187148 [ TATCCGATATTGATATTTCACTTGGGTACGTCGCTAATGTTACTGGACGCGAACGTGATGATGAAGCTTTCATTCATTTTACATCGTTCCTCACTCCTGGAATAATTTACTCCTATGATTTTTCTCACTCCCATCCAAAATTGCAGGTTATCAGAGAGTCGAAGATT ]
consensusID : consensus_9506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 408 fasta sequence
[TGTTTTTTACTGTATGTACCCTCAGCATGAAGGTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGAATATGTGCGTATAAACAAAAGTCTTAGTTCAAATGACAAATTTTTTAATCATTCACTTATTGACTTAGCCTACTTCTAAAGTACGTGCTGTCCCACATTGACTTGTATGAAAACCTCCCAAGACCAGTTATTTAGCTTCATGTTTTCAAGCTTTATTTTAGCGGTGGCAAAATAATTTCTTTTCCTGTTGCAATTGATCTCACTTGGTATGCATGTATGACATACAAATCCCGAATCTGTTGCTTANCAACATGTA]
[+] EMBL CD086077 [TGTTTTTTACTGTATGTACCCTCAGCATGAAGGTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTCTGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGAATATGTGCGTATAAACAAAAGTCTTAGTTCAAATGACAAATTTTTTAATCATTCACTTATTGACTTAGCCTACTTCTAAAGTACGTGCTGTCCCACATTGACTTGTATGAAAACCTCCCAAGACCAGTTATTTAGCTTCATGTTTTCAAGCTTTATTTTAGCGGTGGCAAAATAATTTCTTTTCCTGTTGCAATTGATCTCACTTGGTATGCATGTATGACATACAAATCCCGAATCTGTTGCTTANCAACATGTA]
[+] EMBL CD086134 [ ATNTTTTGTGCCTGGAACGACCGGATCAACCTACTTGGAATATGTGCGTATAAACAAAAGTCTTAGTTCAAATGACAAATTTTTTAATCATTCACTTATTGACTTAGCCTACTTCTAAAGTACGTGCTGTCCCACATTGACTTGTATGAAAACCTCCCAAGACCAGTTATTTAGCTTCATGTTTTCAAGCTTTATTTTAGCGGTGGCAAAATAATTTCTTTTCCTGTTGCAATTGATCTCACTTGGTATGCATGTATGACATACAAATCCCGAATCTGTTGCTTAGCAACATGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9506#0 AAGGAACTTACTGTTGTTATGGTCTTAGTTTTGGTGGTTCTGATTGGTGTGAACTTAAAT 60
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TTAAAACCTGTGAATCGGGCGAAGATCTTCCAGATGTTTTGCAACATGTCAAATTCAGTT 120
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 CAATTTCGTGGACAAAGGATGAGAAAGGTGTTTTTTACTGTATGTACCCTCAGCATGAAG 180
consensus_9506#1 ----------------------------TGTTTTTTACTGTATGTACCCTCAGCATGAAG 32
********************************
consensus_9506#0 GTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTC 240
consensus_9506#1 GTAAAGCAGATGGTACTGAAACAACTACTAATACTGATCAGAAGCTCATGTACCATCGTC 92
************************************************************
consensus_9506#0 TGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGA 300
consensus_9506#1 TGGGTACACTACAGTCAGATGATATTTTGTGCCTGGAACGACCGGATCAACCTACTTGGA 152
************************************************************
consensus_9506#0 ATATTC------AAGGAGAAGTGTCTGATTGTGGGAGATACTTATTGGTAACTTTGTATG 354
consensus_9506#1 ATATGTGCGTATAAACAAAAGTCTTAGTTCAAATGACAAATTTTTTAATCA-TTCACTTA 211
**** ** * **** * * * ** * * ** ** * * ** *
consensus_9506#0 ATGGATGTGAACCTAATAACCAGCTTTTCTACTGTGATCTTGAAAAAGTCGATCTAGTTG 414
consensus_9506#1 TTGACT----------TAGCCTACTTCTAAAGTACGTGCTGTCCCACATTGACTTG--TA 259
** * ** ** *** * * * * ** * * ** * *
consensus_9506#0 TCAAAAAAAAACTTGACTTGATCCCAATCGTCGATCGCTTTGAAGCTGTCTTTTAATTTG 474
consensus_9506#1 TGAAAACCTCCCAAGACCAGTTATTTAGCTTCA--TGTTTTCAAGCTTTATTTTAGCGGT 317
* **** * *** * * * * ** * *** ***** * *****
consensus_9506#0 TGACAAATGAGGGTGATTCAT-TTGTATTTCGCACCAACTTAGATGCTCCGATGTACAAG 533
consensus_9506#1 GGCAAAATAATTTCTTTTCCTGTTGCAATTGATCTCACTTGGTATGC----ATGTATGAC 373
* **** * *** * *** * ** ** * **** ***** *
consensus_9506#0 ATAATCAAAATCAGTCTTTCTAATTGCGATCGTCAAAATTGGGAAGATCTTATCCATCAC 593
consensus_9506#1 ATA-CAAATCCCGAATCTGTTGCTTANCAACATGTA------------------------ 408
*** ** * * * ** * * * *
consensus_9506#0 AATATGGAGTCACTCTTAGAAAGTGCAGTTTGTGTGAATGAGGATAAATTAGTCATTTGT 653
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 CGTCTGAAGGATGTTAAGAGCTGCTTATCCGTGCACAAACTACTCACTGGGGAGAAGATA 713
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TCCGATATTGATATTTCACTTGGGTACGTCGCTAATGTAACTGGACGCAAACGTGATGAT 773
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 GAAGCTTTCATTCATTTTACATCGTTCCTCACTCCTGGAATAATTTACTCCTATGATTTT 833
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TCTCACTCCCATCCAAAATTGGAGGTTATCAGAGAGTCGAAGATTCGGGATGTAGACTTA 893
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 AATCAATTTGAAGTGAAACAAGTATTCTATGAGAGTAAAGATAAAACTGTAGTTCCTATG 953
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TTTCTTATTTTACCTAAAAACTTTCAACAAAACAACTCGGCACCG 998
consensus_9506#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||