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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1040 fasta sequence
[CCTAACATCCGGATTTCCCGTGCTCCCGTAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTTCAATGTGAAAATGGCTCTGCTGCAGCTCTCCCTCCGAACTATGGCTCATGTGGACGATCTGTGAGAAGCTCTAAAAGAAAACAAGATCTGCTAACACTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTTTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAACGATATGTACGACTA-CCGCAAACATTACAATCCGTTTGTACTGTTTTACAAATCCTTCCCGAAGTTACCTCTCTGTGTTGATGCTCGCAAGTATGGCAATGAAGCACGCTTTATCCGTCGGTCATGTACACCTAACTCTGAGGTCCGCCATTGCATTTCCTTTTCAGATGATCAACATAATGGACCCGTTCC]
[+] EMBL CD161458 [CCTAACATCCGGATTTCCCGTGCTCCCGTAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTTCAATGTGAAAATGGCTCTGCTGCAGCTCTCCCTCCGAACTATGGCTCATGTGGACGATCTGTGAGAAGCTCTAAAAGAAAACAAGATCTGCTAACACTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGT ]
[+] EMBL CD116868 [ TGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTCTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAACGATATGTACGACTANCCGCA ]
[-] EMBL CD094789 [ CATNGAGGGC TTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGCTTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCCGATAAAATGCAAATTCGTCATAGCAGCATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTTTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTC ]
[+] EMBL CD132280 [ CATTGTACATCGTTTAATTACAGATTGCCCAAATAATAAGGTACAAAATGCATCTACTCAGGTAAATGAAGTGTGCCATACCTCCCCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTCCATCAGATATCTATGAAGAAGCCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTAATGTTTCCTCTGTTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGT ]
[+] EMBL CD068268 [ GGTA TTTAACGAAGAAATTCCTTCTAATCTCGAGCGTCTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCA GGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAATGATATGTACGACTA CCGCAAACATTACAATCCGTTTGTACTGTTTTACAAATCCTTCCCGAAGTTACCTCTCTGTGTTGATGCTCGCAAGTATGGCAATGAAGCACGCTTTATCCGTCGGTCATGTACACCTAACTCTGAGGTCCGCCATTGCATTTCCTTTTCAGATGATCAACATAATGGACCCGTTCC]
[+] EMBL CD114426 [ AAGAAATTCCTTCTAATCTCGAGCGTTTGTTCCGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGGCCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCTTTTATTGAGTACCGTGGTAATTGTTTGTTACTCAGTGAATACAACGATATGTACGACTA CCGCAAACATTACAATCCGTTTGTACTGTCTTACAAATCCTTCCCGAAGTTACCTCTCTGTGTTGATGCTCGCAAGTATGGCAATGAAGCACGCTTTATCCGTCCGGCATGTACACC ]
consensusID : consensus_9507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 637 fasta sequence
[CCCAGTAACGGACAATCCCTGGTCACAACGACTAGTCACGTTTCT-CCTTGCCTAGTCGAACAATCCTAATCTCAACTGCCGGTGGTAATGCAAATCCTCCC-TGCA-AATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGGACTGGTTTGCCTGGTCTTCAAATTTCTACTACTGCTCCACGTCAAGTTTCTACAGATAGTATGGATTCTGTTCGTTGCGTNTGCGGAAATACGAATTTGGATGGTTATCTCGTTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCATCTGCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATGCCAGACACAGTCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGCGTTTAATAGCGTTGGATCAACTACAACTCCTAACATCCGGATTTCCCGTGCTCCCATAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTCCAATGTGGTGAGTTCAATCTAGTTTCTAGTGTGATTTCAGAAAATGGCGCTGCTGCGGGGCGCTGG]
[+] EMBL CD129547 [CCCAGTAACGGACAATCCCTGGTCACAACGACTAGTCACGTTTCT CCTTGCCTAGTCGAACAATCCTAATCTCAACTGCCGGTGGTAATGCAAATCCTCCCTTGCA AATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGGACTGGT ]
[-] EMBL CD183708 [ aACTAGTCACGTTTCTCCCNTGCCTAGTCGAACAATCCTAATCTCAACTGCCGGTGGTAATGTAAATCCTCCC TGCANNATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGGACTGGTTTGCCTGGTCTTCAAATTTCTACTACTGCTCCACGTCAAGTTTCTACAGATAGTATGGATTCTGTTCGTTGCGTNTGCGGAAATACGAATTTGGATGGTTATCTCGTTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCATCTGCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATGCCAGACACAGTCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGCGTTTAATAGCGTTGGATCAACTACAACTCCTAACATCCGGATTTCCCGTGCTCCCATAGGAACAAATACATCTTCAGGACGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAATCAAGGGATGTCTAATGTCCAATGTGGTGAGTTCAATCTAGTTTCTAGTGTGATTTCAGAAAATGGCGCTGCTGCGGGGCGCTGG]
[-] EMBL CD167868 [ TACGAATTTGGATGGTTATCTCGTTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCATCTGCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATGCCAGACACAGTCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGCGTTTAATAGCGTTGGATCAACTACAA ]
consensusID : consensus_9507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[AGATTTAAATTAATNTATATCTTTCTTTCTACGTACTAATTCTTTCTCCCTGCATCATATCCTTTTATGAAATCTTCTTTTACTACTAGTGAAGTAATTGCTCCTATGAATTCGGTGTGCTAATGAGGTATGGCAATTTTGATTGGTGCATATATGTGCCTGGTCATACGCTATAGCTGACTGCCTGAATGCTTGCTCACTACTCACCATAGACTATAATCCAGTTTTATGTGGAGGTTGGATCTTGCAGTGTTATTTAGTTGGATGGTGACAACCTGTGTCGGAGTCTTCGTTCATGCATCAGCCCCAGATATTACATCTCTTCCCAGCTTCATTATTTTTCAAATTTGTCAATGAAGTGGATGACATAGCACCGTAATATGTATCTTTAATTTTGTATGAATTTACTGTTTTCAGTGCTTATTATCGAAACTTGTTTTCTCTATCATGTGTTTTTTGAATATTCTTATAGTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTCTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATATAAAGA]
[-] EMBL CD161581 [AGATTTAAATTAATNTATATCTTTCTTTCTACGTACTAATTCTTTCTCCCTGCATCATATCCTTTTATGAAATCTTCTTTTACTACTAGTGAAGTAATTGCTCCTATGAATTCGGTGTGCTAATGAGGTATGGCAATTTTGATTGGTGCATATATGTGCCTGGTCATACGCTATAGCTGACTGCCTGAATGCTTGCTCACTACTCACCATAGACTATAATCCAGTTTTATGTGGAGGTTGGATCTTGCAGTGTTATTTAGTTGGATGGTGACAACCTGTGTCGGAGTCTTCGTTCATGCATCAGCCCCAGATATTACATCTCTTCCCAGCTTCATTATTTTTCAAATTTGTCAATGAAGTGGATGACATAGCACCGTAATATGTATCTTTAATTTTGTATGAATTTACTGTTTTCAGTGCTTATTATCGAAACTTGTTTTCTCTATCATGTGTTTTTTGAATATTCTTATAGTCACTGGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTCTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATATAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9507#0 CCTAACATCCGGATTTCCCGTGCTCCCGTAGGAACAAATACATCTTCAGGACGCGTTTTC 60
consensus_9507#1 ------------------------------------------------------------
consensus_9507#2 ------------------------------------------------------------
consensus_9507#0 TTAACAAATACGTTCGGAGGTGTGACTCATCGACAAGTTCACGTCTGTATCCCAGCAAAT 120
consensus_9507#1 ------------------------------------------------------------
consensus_9507#2 ------------------------------------------------------------
consensus_9507#0 CAAGGGATGTCTAATGTTCAATGTGAAAATGGCTCTGCTGCAGCTCTCCCTCCGAACTAT 180
consensus_9507#1 ------------------------------------------------------------
consensus_9507#2 ------------------------------------------------------------
consensus_9507#0 GGCTCATGTGGACGATCTGTGAGAAGCTCTAAAAGAAAACAAGATCTGCTAACACTCACT 240
consensus_9507#1 ------------------------------------------------------------
consensus_9507#2 ------------------------------------------------------------
consensus_9507#0 GGTGGATCATCCTCCGCAAATGCAGGCATTGAGGGCTTTTCAAGCTCACCTCCGGTGTTG 300
consensus_9507#1 ------------------------------------------------------------
consensus_9507#2 ------------------------------------------------------------
consensus_9507#0 GATGACTATGATGACTTGTCAAACATGCGACCATCTTATGCCACTGATTTAAAGAGCTGC 360
consensus_9507#1 ------------------------------------------------------------
consensus_9507#2 ------------------------------------------------------------
consensus_9507#0 TTCATGGAGGGTTCATTGAACGTATGCCAAACACAAGGAAGTCATCCAATCCCTGTGTCC 420
consensus_9507#1 --------------------------CCCAGTAACGGACAATC-CCTGGTCACAACGACT 33
consensus_9507#2 --------------------------------AGATTTAAATTAATNTATATCTTTCTTT 28
* * * * *
consensus_9507#0 GATAAAGTGCAAATTCGTCATAGCAGCATTGTACATCGTT-TAATTACAGATTGCCCAAA 479
consensus_9507#1 AGTCACGTTTCTCCTTGCC-TAGTCGAACAATCCTAATCT-CAACTGCCGGTGGTAATGC 91
consensus_9507#2 --CTACGTACTAATTCTTTCTCCCTGCATCATATCCTTTTATGAAATCTTCTTTTACTAC 86
* ** * * * * * * * * *
consensus_9507#0 TAATAAGGTACA-AAATGCATCTACTCAGGTAA------ATGAAGTGTGCCATACCTCC- 531
consensus_9507#1 AAATCCTCCCTGCAAATTCATCGAGTTAGTTCATCCCTCACCCCACATGTTATCTTGCGG 151
consensus_9507#2 TAGTGAAGTAATTGCTCCTATGAATTCGGTGTG---CTAATGAGGTATGGCA-------- 135
* * ** * * * * ** *
consensus_9507#0 -CCTCCTTGTTCAGCACCTGACTCTGTACTATCTCCTC-CATCAGATATCTATGAAGAAG 589
consensus_9507#1 ACTGGTTTGCCTGGTCTTCAAATTTCTACTACTGCTCCACGTCAAGTTTCTACAGATA-G 210
consensus_9507#2 ---ATTTTGATTGGTGCATATATGTGC-CTGGTCATACGCTATAGCTGACTGCCTGAATG 191
*** * * * ** * * * * ** * *
consensus_9507#0 CCCAGGCTCTACATCTTTCAAGCCGTGTTTGCAAAAAACTCAGTTTA-ATGTTTCCTCTG 648
consensus_9507#1 TATGGATTCTG-----TTC--GTTGCGTNTGCGGAAATACGAATTTGGATGGTTATCTCG 263
consensus_9507#2 CTTGCTCACTA-----CTCACCATAGACTATAATCCAGTTTTATGTGGAGGTTGGATCT- 245
** ** * * * * * *
consensus_9507#0 TTTACTGGCATAGGAGCAGACTGTGGCGACATAGATGGTATTTTTAACGAAGAAATTCCT 708
consensus_9507#1 TTCAGTGTAATCAGTGCAGAATTTGGCACCACAGTGAATGTATTTCAT----------CT 313
consensus_9507#2 TGCAGTGTTATTTAGTTGGATGGTGACAACCTGTGTCGGAGTCTTCGTTCA------TGC 299
* * ** ** ** ** * * **
consensus_9507#0 TCTAATCTCGAGCGTTTGTTC-CGTTATCAGGTTGTTAGTTTCGACTTCAACCGCAGGGG 767
consensus_9507#1 GCTAGTAAAAGTCACCTGTCAACACCATATGTTTGTGAAATATG---CCAGACACAG--- 367
consensus_9507#2 ATCAGCCCCAGATATTACATCTCTTCCCAGCTTCATTATTTT-----TCAAATTTG---- 350
* * * * * * **
consensus_9507#0 CCTAATAGCAAATGAAGACATTTGTCCTCGTACGCCGATTATTGAGTACCGTGGTAATTG 827
consensus_9507#1 -TCAAAAGCTATCGCTACTCAACGGCCTCATTTGACTGC-GTTTAATAGCGTTG-GATCA 424
consensus_9507#2 -TCAATGA-AGTGGATGACA--TAGCACCGTAATATGTATCTTTAATTTTGTATGAATTT 406
** * * * * ** * * ** **
consensus_9507#0 TTTGTTACTCAGTGAATACA-ACGATATGTACGACTACCGCAAACATTACAA--TCCGTT 884
consensus_9507#1 ACTACAACTCCTAACATCCGGATTTCCCGTGCTCCCATAGGAACAAATACATCTTCAGGA 484
consensus_9507#2 ACTGTT-TTCAGTGCTTATTATCGAAACTTGTTTTCTC------TATCATGTGTTT--TT 457
* ** * * * * *
consensus_9507#0 TGTACTGTTTTA-CAAATCCTTCCCGAAGT-TACCTCTCTGTGTTGATGCTCGCAAGTAT 942
consensus_9507#1 CGCGTTTTCTTAACAAATACGTTCGGAGGTGTGACTCATCG-ACAAGTTCACGTCTGTAT 543
consensus_9507#2 TGAATATTCTTA-----TAGTCACTGGTGGATCATCCTCCG--CAAATGCAGGCATTGAG 510
* * *** * * * * * * * * * * *
consensus_9507#0 GGCAATG-AAGCACGCTTTATCCGTCGGTCATGTACACCTAACTCTGAGGTCCGCCATTG 1001
consensus_9507#1 CCCAGCA-AATCAAGGGATGTCTAATGTCCA-ATGTGGTGAGTTC---AATCTAGT-TTC 597
consensus_9507#2 GGCTCTTCAAGCTCACCTCCGGTGTTGGATGACTATGATGACTT-----GTCAAACATGC 565
* ** * * * * * ** *
consensus_9507#0 CATTTCCTTTTCAGATGATCAACATAATG-GACCCGTTCC 1040
consensus_9507#1 TAGTGTGATTTCAGAAAATGGCGCTGCTGCGGGGCGCTGG 637
consensus_9507#2 GA---CCATCTTATGCCACTGATATAAAGA---------- 592
* * * * * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||