These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 927 fasta sequence [GAGCCAAGATTGCGGCACGAGGCCTGATCTTCGATTGCTGCTAG-AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG-AGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCA-TTAAATACAGCACCCCGAATACCTATATCATGAATGGGAT-ATTTATTAGCTCATA-TCATGCATGTCTGAGTG-ACCCAGGATTTT-CA-TTTACTGTGATCAGNTA-TGCTNCCATGG--TTCTG-TNATTG-TCTATG-TAA-GCT-AAG-ATTGCGG-TTT-GCTCA-TTA-AAT--AAAC-AGT-TAAAACC] [+] EMBL CD081361 [GAGCCAAGATTGCGGCACGAGGCCTGATCTTCGATTGCTGCTAG AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG AGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCA TTAAATACAGCACCCCGAATACCTATATCATGAATGGGAT ATTTATTAGCTCATA TCATGCATGTCTGAGTG ACCCAGGATTTT CA TTTACTGTGATCAGNTA TGCTNCCATGG TTCTG TNATTG TCTATG TAA GCT AAG ATTGCGG TTT GCTCA TTA AAT AAAC AGT TAAA ] [+] EMBL CD116183 [ TGATCTTCGATTGCTGCTAG AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG AGGAAGAGGTCGTTGAAATTCAGGTTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCANATACCTACGGTTTCGCGAATGTCTTCAGGCCT ] [+] EMBL CD116079 [ TGATCTTCGATTGCTGCTAG AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGGCTGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCGAATGTCTTCAGGCCTTGGCT ] [+] EMBL CD116060 [ TGATCTTCGATTGCTGCTAGAAAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG AGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAGAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCANATACCTACGGTTTCGCANATGTCTTCAGGCCTTGGC ] [+] EMBL CD161082 [ ATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAATAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCT ] [-] EMBL CD133087 [ CCAAATACGCNGCATAATGGAANTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGA TTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATACATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCC ] [-] EMBL CD075195 [ ACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGTATAAAACC] consensusID : consensus_9514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 393 fasta sequence [TCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGGTATAAACCCGTTTCTTTCAACCCCATGGTTTCAGCGCAAAAATGAAACTTTTACTACTTTGTTTAAAAAAAAAAAAAAAAA] [-] EMBL BF936036 [TCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGGTATAAACCCGTTTCTTTCAACCCCATGGTTTCAGCGCAAAAATGAAACTTTTAC ] [-] EMBL AI395520 [ GGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAA GTATAAAACCGTTTCTTTCAACCCCAT GTTTCAGCGCAAAAATGAAACTTTTACTACTTTGTTTAAAAAAAAAAAAAAAAA] consensusID : consensus_9514#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [GGCCCCCCCCCAAAGGTCGACGGAATCAATAAGCTTGATTTCGAATTCAGGGAAAAGTGTCTCAATAATGAAAGAAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAC] [-] EMBL BG930707 [GGCCCCCCCCCAAAGGTCGACGGAATCAATAAGCTTGATTTCGAATTCAGGGAAAAGTGTCTCAATAATGAAAGAAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9514#0 GAGCCAAGATTGCGGCACGAGGCCTGATCTTCGATTGCTGCTAGAAAAAAAACGTTTAAC 60 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 ------------------------------------------------------------ consensus_9514#0 AATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGC 120 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 ------------------------------------------------------------ consensus_9514#0 ACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGGAGGA 180 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 ------------------------------------------------------------ consensus_9514#0 AGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAA 240 consensus_9514#2 ----------------------------------------------GGCCCCCCCCCAAA 14 consensus_9514#1 --------------------------------------------TCCTTGTCACTTCAAA 16 * **** consensus_9514#0 ACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGT-GTCTCAATAATG 299 consensus_9514#2 GGTCGACGGA-ATCAATAAGCTTGATT--TCGAATTCAGGGAAAAGT-GTCTCAATAATG 70 consensus_9514#1 AATCATCTT---CAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGC 73 * *** * * * * *** * * *** * consensus_9514#0 AAAGTAATGGATTTCAGATAAAGACAGTCCGCA-TGTTGGATTCTAACGGTCAA------ 352 consensus_9514#2 AAAGAAATGGATTTCAGATAAAGACAGTCCGCA-TGTTGGATTCTAACGGTCAA------ 123 consensus_9514#1 AGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAG 133 * ** *** * *** *** * * *** * * ** ** consensus_9514#0 CCTGCTGGAT-TTGCTTACATTAATTCGACGTTCT-----CTTCTAATTGTATGGGTCCT 406 consensus_9514#2 CCTGCTGGAT-TTGCTTACATTAATTCGACGTTCT-----CTTCTAATTGTATGGGTCCT 177 consensus_9514#1 CACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTG 193 * * * ** * * *** *** * * * ** ** * * *** consensus_9514#0 GAGATTCATAAAGTCATCCATCCAACAG-ATCAAAGTTGTGATGTCATAGGAATC-GCAA 464 consensus_9514#2 GAGATTCATAAAGTCATCCATCCAACAG-ATCAAAGTTGTGATGTCATAGGAATC-GCAA 235 consensus_9514#1 AGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTC 253 * ** * ***** ** * **** ** * *** * ** * consensus_9514#0 CTTGTTCAAAGCATAACCCTCTATCTTCAGGTTC-----CAATAAGTACAAATTTAGCCT 519 consensus_9514#2 CTTGTTCAAAGCATAACCCTCTATCTTCAGGTTC-----CAATAAGTACAAATTTAGCCT 290 consensus_9514#1 ATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGGT 313 ****** * * * * * ** ** * ** * ** * *** * * consensus_9514#0 AGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTC 579 consensus_9514#2 AGAAGAC----------------------------------------------------- 297 consensus_9514#1 ATAAACCCGTTTCTTTCAACCCCATGGTTTCAGCGCAAAAATGAAACTTTTACTACTTTG 373 * ** consensus_9514#0 AGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCA 639 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 TTTAAAAAAAAAAAAAAAAA---------------------------------------- 393 consensus_9514#0 CTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACA 699 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 ------------------------------------------------------------ consensus_9514#0 CAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCATTAAATA 759 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 ------------------------------------------------------------ consensus_9514#0 CAGCACCCCGAATACCTATATCATGAATGGGATATTTATTAGCTCATATCATGCATGTCT 819 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 ------------------------------------------------------------ consensus_9514#0 GAGTGACCCAGGATTTTCATTTACTGTGATCAGNTATGCTNCCATGGTTCTGTNATTGTC 879 consensus_9514#2 ------------------------------------------------------------ consensus_9514#1 ------------------------------------------------------------ consensus_9514#0 TATGTAAGCTAAGATTGCGGTTTGCTCATTAAATAAACAGTTAAAACC 927 consensus_9514#2 ------------------------------------------------ consensus_9514#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||