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Schistosoma mansoni
cluster # 9515 cluster # 9515       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9515#0 length = 1071 sequences # 9  
consensus_9515#1 length = 367 sequences # 1  

consensusID : consensus_9515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1071
fasta sequence
                              [CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGCTCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAA---A----AAAAAAAAAAAAAAAAA]

[+] EMBL CD192938             [CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGCTCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD078933             [                                                             CACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD147930             [                                                                                                                                                                                AGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGGATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD155069             [                                                                                                                                                                                                                                                                      GAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCCTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGCTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD154944             [                                                                                                                                                                                                                                                                      GAGCTATAGGTTCACCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD155018             [                                                                                                                                                                                                                                                                      GAGCTATAGGTTCACCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AI395829             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AACATGTCGTTTGTTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTAATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGCTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTAAAAAAAAAAAAAAAAA]
[-] EMBL CD073388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTTTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTTTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGT                                    ]
[-] EMBL AI395496             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAA   A    AAAAAAAAAAAAAAAA ]


>consensus_9515#0 CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGC TCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAA GTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTA TCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCT GTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCC AAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGAC AGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTT ATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGT AGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGT CAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCT AATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTA ATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACA TGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATC AAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACA AATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACAC CAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAAT ATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCAT ACACTCTATAATATATTTACGTTTCCTCATGAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_9515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence
                              [TTTCATCAAAACCTCCTCATAAACTGTATACCCTACAAATCTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTAGTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTAAAGCTAACTTACCACAAAAAAAAAAAAAAAA]

[-] EMBL AI395202             [TTTCATCAAAACCTCCTCATAAACTGTATACCCTACAAATCTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTAGTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTAAAGCTAACTTACCACAAAAAAAAAAAAAAAA]


>consensus_9515#1 TTTCATCAAAACCTCCTCATAAACTGTATACCCTACAAATCTCTTTTATGTGATTTATCT GATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTC TTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTCTATTTGAAATTATCTAGA AATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTT CCTCATGAATTTACTGTACATATCAAAAGTATTTTAGTGTCTTTCTAATGTAGTGTAAGA TGATGCTGTATGTAAAATCCTTGCTTACTAATATTAAAGCTAACTTACCACAAAAAAAAA AAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9515#0      CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGC 60
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      TCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAA 120
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      GTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTA 180
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      TCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCT 240
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      GTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCC 300
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      AAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGAC 360
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      AGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTT 420
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      ATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGT 480
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      AGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGT 540
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      CAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCT 600
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      AATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTA 660
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      ATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACA 720
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      TGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATC 780
consensus_9515#1      ------------------------------------------------------------
                                                                                  

consensus_9515#0      AAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACA 840
consensus_9515#1      ----------------------TTTCATCAAAACCTC-CTCATAAACTGTATACCCTACA 37
                                            ********** ** *  *********************

consensus_9515#0      AATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACAC 900
consensus_9515#1      AAT-CTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACAC 96
                      *** ****************** *************************************

consensus_9515#0      CAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAAT 960
consensus_9515#1      CAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAAT 156
                      ************************************************************

consensus_9515#0      ATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCAT 1020
consensus_9515#1      ATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCAT 216
                      ***** ******************************************************

consensus_9515#0      ACACTCTATAATATATTTACGTTTCCTCATGAAAAAAAAAAAAAAAAAAAA--------- 1071
consensus_9515#1      ACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTA 276
                      *********************************   *    * * *  ***         

consensus_9515#0      ------------------------------------------------------------
consensus_9515#1      GTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTA 336
                                                                                  

consensus_9515#0      -------------------------------
consensus_9515#1      AAGCTAACTTACCACAAAAAAAAAAAAAAAA 367
                                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)