These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1071 fasta sequence [CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGCTCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAA---A----AAAAAAAAAAAAAAAAA] [+] EMBL CD192938 [CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGCTCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGA ] [+] EMBL CD078933 [ CACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAAGTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAA ] [+] EMBL CD147930 [ AGTATCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCTGTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGGATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACT ] [-] EMBL CD155069 [ GAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCCTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGCTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA ] [-] EMBL CD154944 [ GAGCTATAGGTTCACCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA ] [-] EMBL CD155018 [ GAGCTATAGGTTCACCTTTTGAGTTGCAAGGACATTCCAAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGACAGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTTATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGTAGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAA ] [-] EMBL AI395829 [ AACATGTCGTTTGTTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTAATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGCTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTAAAAAAAAAAAAAAAAA] [-] EMBL CD073388 [ TGGTGTGCGTCAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCTAATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTAATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACATGTATTCGTGTAGAGGAATCCTTGAATTTACTTTTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTTTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGT ] [-] EMBL AI395496 [ CTAACGGTTGGGAAAGATCGGATTATCAAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACAAATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAA A AAAAAAAAAAAAAAAA ] consensusID : consensus_9515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [TTTCATCAAAACCTCCTCATAAACTGTATACCCTACAAATCTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTAGTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTAAAGCTAACTTACCACAAAAAAAAAAAAAAAA] [-] EMBL AI395202 [TTTCATCAAAACCTCCTCATAAACTGTATACCCTACAAATCTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACACCAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAATATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCATACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTAGTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTAAAGCTAACTTACCACAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9515#0 CCTCTACTATGTGAACATATTTTAGAGCACTCAGCCATGTGTTTGGAATATGATGTTGGC 60 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 TCACACTACGTGTTTGTTGGTGATAGCAGCGGTCGCATTACTTTACTGAGCATTAATCAA 120 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 GTCAATGGTCAAGTAATGTGTCGTGTAATTCGTGAACTCCGTGGCCATGAGCAGTCAGTA 180 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 TCCTTTCTGGCTTGGGATAGTATAAATTCTCGTCTATTTTCTTGTAGCGCCGACCATTCT 240 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 GTTATTTTCTGGGATATTGGCGGAGCTAAAGGTTCATCTTTTGAGTTGCAAGGACATTCC 300 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 AAAGAAGTGTCGTCAATATGTTGGTGGAGTACGGGTGCTTCTTCTGCAAATGTCAAGGAC 360 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 AGTAAGTACAAAGGACTACTTATATCCGGTGGTCTTGATGGGTATCTGATTTTCTGGTTT 420 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 ATGGACCCTTCACGCATAGAAAGTCCTAACTGGTCAGAATCAGATGTCTGTCATATCTGT 480 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 AGCGGGCCATTTTTCTGGAATGTCCGCAAAATGTGGAACAACATGTCGGTTGGTGTGCGT 540 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 CAGCATCACTGTCGTCGATGTGGCCATGCTGTTTGTGACAAATGTTCTCCTTATCGGTCT 600 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 AATCTACCGTGCATGGGTTTTGAAAAAGATGTTCGTATATGCAGTCAATGCTTTCCTCTA 660 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 ATAACTGATTCAGACCGTAGGAGTTTGGCTATTTCGTTTGATGCTCGTCATCCTGTTACA 720 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 TGTATTCGTGTAGAGGAATCCTTGAATTTACTTCTAACGGTTGGGAAAGATCGGATTATC 780 consensus_9515#1 ------------------------------------------------------------ consensus_9515#0 AAGGTGTGGGATATCAAAGCTTTTTCATCAAATCCACATTCATAAACTGTATACCCTACA 840 consensus_9515#1 ----------------------TTTCATCAAAACCTC-CTCATAAACTGTATACCCTACA 37 ********** ** * ********************* consensus_9515#0 AATACTCTTTTATGTGATTTATTTGATAGGATTATTTCCCACCTTTCATGGTGCATACAC 900 consensus_9515#1 AAT-CTCTTTTATGTGATTTATCTGATAGGATTATTTCCCACCTTTCATGGTGCATACAC 96 *** ****************** ************************************* consensus_9515#0 CAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAAT 960 consensus_9515#1 CAGTGATTTTGAAACACTTTATTCTTCCTTATGTTCTACGAAACATTTGATTTTGAAAAT 156 ************************************************************ consensus_9515#0 ATGTTTTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCAT 1020 consensus_9515#1 ATGTTCTATTTGAAATTATCTAGAAATGATCTCATAACTTTGAATAAGATATATAGGCAT 216 ***** ****************************************************** consensus_9515#0 ACACTCTATAATATATTTACGTTTCCTCATGAAAAAAAAAAAAAAAAAAAA--------- 1071 consensus_9515#1 ACACTCTATAATATATTTACGTTTCCTCATGAATTTACTGTACATATCAAAAGTATTTTA 276 ********************************* * * * * *** consensus_9515#0 ------------------------------------------------------------ consensus_9515#1 GTGTCTTTCTAATGTAGTGTAAGATGATGCTGTATGTAAAATCCTTGCTTACTAATATTA 336 consensus_9515#0 ------------------------------- consensus_9515#1 AAGCTAACTTACCACAAAAAAAAAAAAAAAA 367 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||