These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1057 fasta sequence [CCTCGAGGGCCANAATTCGGCACGAGGTAAAACTAGACAACAAGACGGCTATGAAATTTCTCTGCTCATAAATCAACCTACAATAACTGATAGTGGAAGGTATGAGTGCCGTGCAGGGAATGTTGCTGCTTTCATAGATGTAAATGTGGAAGAATCAGCAATTCCATTCACTGTGCTACTTACAAGTGATGATGGGATTCTAATGACACAATCTACCGATTCAAATGTAACCAAAGCTACTCTATGGAATATTGCTGAAAATAACAAGTATGGACGTGTCTCCATGGTTGGTGATTGTAATAGTCAACGAATTATATATACATCTGATTATGGTCATACTATCCGATGGGGTAATTCAAACTCTGGACAAAATAAGTTGGTGACAAAAGAAATATACACTTCTCAATTTAACCGATTTCGTAATTTGGCGGTAGATTCATTATCTGGAAATGTATTTGCCTGGGAAGAGGCCTTTGGGAAAATTATGGTATTCAATCCAAATAAACCAAATATTCATTATACACNTTGAAAGTTTACATAGCTTAACTTCTTCTGAACAACAGAATTTCGCTGGACTAGCTNTGCATTCCACATTAGGTCTAATGTACTGGNGC-ATATACACAGACGGTTGGAGACCGAATGGTACAATTCAAGTAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAACCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAA-CCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC] [+] EMBL CD082760 [CCTCGAGGGCCANAATTCGGCACGAGGTAAAACTAGACAACAAGACGGCTATGAAATTTCTCTGCTCATAAATCAACCTACAATAACTGATAGTGGAAGGTATGAGTGCCGTGCAGGGAATGTTGCTGCTTTCATAGATGTAAATGTGGAAGAATCAGCAATTCCATTCACTGTGCTACTTACAAGTGATGATGGGATTCTAATGACACAATCTACCGATTCAAATGTAACCAAAGCTACTCTATGGAATATTGCTGAAAATAACAAGTATGGACGTGTCTCCATGGTTGGTGATTGTAATAGTCAACGAATTATATATACATCTGATTATGGTCATACTATCCGATGGGGTAATTCAAACTCTGGACAAAATAAGTTGGTGACAAAAGAAATATACACTTCTCAATTTAACCGATTTCGTAATTTGGCGGTAGATTCATTATCTGGAAATGTATTTGCCTGGGAAGAGGCCTTTGGGAAAATTATGGTATTCAATCCAAATAAACCAAATATTCATTATACACNTTGAAAGTTTACATAGCTTAACTTCTTCTGAACAACAGAATTTCGCTGGACTAGCTNTGCATTCCACATTAGGTCTAATGTACTGGNGC ATATACACAGACGGTTGG ] [+] EMBL AI021787 [ TCTGAACAACAGAATTTCGCTGGACTAGCTTTGCATTCCACATTAGGTCTAATGTACTGG GCAATATACACAGACGGTTGGAGACCGAATGGTACAATTCAAGTAGCTTCAATGTCTGGTG AAATGAGGAGCAATTATTACAATTAACTGGTGAA CACTGGCAATTAGTATATCACCTGC ACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGG AGAGAGATTTTAACCCACTG AAAGAT AGAG ATTTAGTCCTTCTG AGAA ] [+] EMBL CD169325 [ TAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAACCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAA CCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC] [+] EMBL CD169324 [ TAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAACCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAA CCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC] consensusID : consensus_9524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 919 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAACCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTTTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAAAACATTATTAGGAAAGGTTTATTCTTGAAATATCAATCTTTGTATTACATTTAATCATATTTGCATGTTGTATTTTATCTATATGAATTTGAAGAGTTACAATTGATGAAATAGGTTATATTATCTGAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAATACTTCTCTTAGAATTAGTTTTTTGTGTAATATTTAAACTTTGATGTTACTATATCCTAATAAATTATA] [+] EMBL CD080477 [CTCGAGGCCAAAAATTCGGCACGAGGGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAACCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTNTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGNTGTTTACACTTAGAATT ] [-] EMBL CD177759 [ CGTTTGGTGTGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGAT GTGGTAGATCTCGTACATGTGTATGTC ] [+] EMBL AA931041 [ AGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAG AC AGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATG ] [+] EMBL SM0201 [ AGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAG AC AGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATG ] [-] EMBL CD074388 [ CCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTTTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAAAACATTATTAGGAAAGGTTTATTCTTGAAATATCAATCTTTGTATTACATTTAATCATATTTGCATGTTGTATTTTATCTATATGAATTTGAAGAGTTACAATTGATGAAATAGGTTATATTATCTGAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAATACTTCTCTTAGAATTAGTTTTTTGTGTAATATTTAAACTTTGATGTTACTATATCCTAATAAATTATA] [-] EMBL CD076351 [ CTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTTTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAAAACATTATTAGGAAAGGTTTATTCTTGAAATATCAATCTTTGTATTACATTTAATCATATTTGCATGTTGTATTTTATCTATATGAATTTGAAGAGTTACAATTGATGAAATAGGTTATATTATCTGAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAATACTTCTCTTAGAATTAGTTTTTTGTGTAATATTTAAACTTTGATGTTACTATATCCTAATAAATTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9524#0 CCTCGAGGGCCANAATTCGGCACGAGG-TAAAACTAGACAACAAGA---CGGCTATGAAA 56 consensus_9524#1 -CTCGAGGCCAAAAATTCGGCACGAGGGCAACACCAGTTAATGGTAATTCCGCTGGAAAA 59 ******* * * ************** ** ** ** ** * * *** *** consensus_9524#0 TTTCTCTGCTCATAAATCAACCTACAATAACTGATAGTGGAAGGTA-TGAGTGCCGTGCA 115 consensus_9524#1 TTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACAT-TG 118 ** *** *** ** * ** * * ** * *** * * * consensus_9524#0 GGGAATGTTGCTGCTTTCATAGATGTAAATGTGGAAGAATCAGCAATTCCATTCACTGTG 175 consensus_9524#1 TGCACGATTAGGTCAAACGGGAAGAGAGATATTAACCAATGAA-AAGATAAGAGAATTTA 177 * * ** * * * * ** * * *** * ** * * * * consensus_9524#0 CTACTTACAAGTGATGATGGGATTCTAATGACACAATCTACCGATTCAAATGTAACCAAA 235 consensus_9524#1 GTCCTTCTGAAGAACCATCGT-TTGGTATGACACAGTATAAAGGAACATTATTGTGGACA 236 * *** * * ** * ** ******** * ** * ** * * * consensus_9524#0 GCTACTCTATGGAATATTGCTGAAAATAACAAGTATGGACGTGTCTCCATGGTTGGTGAT 295 consensus_9524#1 GACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCG---CCGAATACGTGTCCGT 293 * ** * ** ** * * ** *** ** ** * ** ** * consensus_9524#0 TGTAATAGTCAA-CGAATTATATATACATCTGATTATGGTCATACTATCCGATGGGGTAA 354 consensus_9524#1 TATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCA-----GTACTAGGTGATTGTCCA- 347 * * ** * *** * * * ** ** * ***** *** * * consensus_9524#0 TTCAAACTCTGGACAAAATAAGTTGGTGACAAAAGAAATATACACTTCTCAATTTAACCG 414 consensus_9524#1 --CAAGCTTCAACTAATCCATGTACTTATTCTAATGGACG-ATGTCGTTATATTTGCT-- 402 *** ** ** * ** * ** * * * **** consensus_9524#0 ATTTCGTAATTTGGCGGTAGATTCATTATCTGGAAATGTATTTGCCTGGGA---AGAGGC 471 consensus_9524#1 -TACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGT 461 * ** * *** ******* ** ** **** * ** * consensus_9524#0 CTTTGGGAAAATTATGGTAT-TCAATC-CAAATAAACCAAATATTCATTATACACNTTGA 529 consensus_9524#1 CATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCC 521 * * **** ** * * *** * ** **** **** ** * * consensus_9524#0 AAGTTTACATAGCTTAACTTCTTCTGAACAACAGAATTTCGCTG--GACTAGCTNTGCAT 587 consensus_9524#1 CAGTTTATATTTTTCAATTTTCATTAACCTA-ATATTTATGTTACTGATTTGTTAGGAAA 580 ****** ** * ** ** * * * * * * ** * * ** * * * * * consensus_9524#0 TCCACATTAGGTCTAATGTACTGGNGCATATACACAGACGGTTGGAGACCGAATGGTACA 647 consensus_9524#1 TTGAAATT---TTGAATTTTCCTTCACA-----------ATTTCAATATCATATGTTACA 626 * * *** * *** * * ** ** * * * *** **** consensus_9524#0 ATTCAAGTAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAA 707 consensus_9524#1 -TTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAA--AACATTATTAG-----GAA 678 ** ** * ** ** * * * * ** * ** * * **** *** consensus_9524#0 CCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTA 767 consensus_9524#1 AGGTTTATTCTTGAAATATCAATCTTTGTA----TTACATTTAATCATATTTGCATGTTG 734 * ** ****** * *** **** * * * ** consensus_9524#0 TGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCAC-TGAATTACATTGTGC 826 consensus_9524#1 TATTTTATCTATATGAATTTGAAGA----GTTACAATTGATGAAATAGGTTATATTATCT 790 * * ** * * ** ** *** *** * * * *** *** * consensus_9524#0 ACGATTAGGTCAAACGGGAAGAGAGAT--ATTAACC-AATGAAAAGATAAGAGAATTTAG 883 consensus_9524#1 GAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAA 850 ** * * * * ** ** *** ** * * *** *** * * consensus_9524#0 TCCTTCTGA-AGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAG 942 consensus_9524#1 TACTTCTCTTAGAATTAGTTTTTTGTGTAATATT-TAAACTTTGATGTTACTATATCCTA 909 * ***** **** * *** ** * * * ** * * *** * * * consensus_9524#0 ACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATG 1002 consensus_9524#1 ATAAATTATA-------------------------------------------------- 919 * * * consensus_9524#0 TCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC 1057 consensus_9524#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||