These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1044 fasta sequence [GCTGATGCTTTGCTTGTAAAGTAGGTAGTTATGGCATTTGTATTGCGTGCGGCCATGCATTTTGGCTTAGTTCGTGCAGAACCATCTATGAAGCCCAGTTCAATCAGCTCAGTGACTGTATGGCCAAAGACACTATTTCCCGTTGAATTAGCACAAACTGTTACGTGGGTGTTTAGTCCAATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA-G-TTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCAATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAATTAAAAGAGCCCTCTCGCTATATTCATAATGTACCAACCAATCTTCGCTTGGATCCCCCAATATTCCTTACAGGCTCTAATGTTCGGATTGACTGTTCGACAGATGGCTCGTTACCTCCAGCTCCAATAAGCTTCAGTATTGAATGTCCTCTCCCACCAACAGCTGTTGTTGAACACGATCGAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCTCCATCTATCTCAA] [-] EMBL CD061034 [GCTGATGCTTTGCTTGTAAAGTAGGTAGTTATGGCATTTGTATTGCGTGCGGCCATGCATTTTGGCTTAGTTCGTGCAGAACCATCTATGAAGCCCAGTTCAATCAGCTCAGTGACTGTATGGCCAAAGACACTATTTCCCGTTGAATTAGCACAAACTGTTACGTGGGTGTTTAGTCCAATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA GTTTTTTTACTATAAGGACATGTATTCCTTGTGGCTT ] [+] EMBL CD133301 [ CTATTTCCCGTTGAATTAGGACAAACTGTTACGTGGGTGTTTAGTCCAATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTCACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA G TTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCAATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAATTAAAAGAGCCCTCTCGCTATATTCATAATGTACCAACCAATCTTCGCTTGGATCCCCCAATATTCCTTACAGGCTCTAATGTTCGGATTGACTGTTCGACAGATGGCTCGTTACCTCCAGCTCCAATAAGCTTCAGTATTGAATGTCCTC ] [+] EMBL CD128072 [ GATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA G TTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCAATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAATTAAAAGAGCCCTCTCGCTATA ] [-] EMBL CD061033 [ ttACAATGGTGGTCAAAGGGCTTTCCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGGCCGCTTATGCAAGG TTTTTTAATATAAGGACATGTATTCCTTGTGGCTT ] [-] EMBL CD161286 [ AGATGGCTCGTTACCT CAGCTCCAATAAGCTTCAGTATTGAATGTCCTCTCCCACCAACAGCTGTTGTTGAACACGATCGAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTC ] [+] EMBL CD122939 [ GAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTCCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATTCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCT ] [-] EMBL CD123153 [ AGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCTC ] [-] EMBL CD123071 [ AGTCACTCAAGCTAAGCAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCTC ] [-] EMBL BG930352 [ TCAAATTATACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATATATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTACGTTGACCCCCCATCTATCTCAA] consensusID : consensus_9531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [GTTTAGGCACACAAATCTTAACTAATAGATTTGATCTTGGATTCCAATGCTAGCCACCATCCATCTTTGTTTAAAACTTATTGTGTTTATTTAAGCTTTAGCTTTATCCATAACTCATATATTTATGCCTTTGTAGATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGT] [+] EMBL CD114367 [GTTTAGGCACACAAATCTTAACTAATAGATTTGATCTTGGATTCCAATGCTAGCCACCATCCATCTTTGTTTAAAACTTATTGTGTTTATTTAAGCTTTAGCTTTATCCATAACTCATATATTTATGCCTTTGTAGATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9531#0 GCTGATGCTTTGCTTGTAAAGTAGGTAGTTATGGCATTTGTATTGCGTGCGGCCATGCAT 60 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 TTTGGCTTAGTTCGTGCAGAACCATCTATGAAGCCCAGTTCAATCAGCTCAGTGACTGTA 120 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 TGGCCAAAGACACTATTTCCCGTTGAATTAGCACAAACTGTTACGTGGGTGTTTAGTCCA 180 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 ATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGG 240 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 GCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATT 300 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 TACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAG 360 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 CTGCTGCAAGTTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCA 420 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 ATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAA 480 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 TTAAAAGAGCCCTCTCGCTATATTCATAATGTACCAACCAATCTTCGCTTGGATCCCCCA 540 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 ATATTCCTTACAGGCTCTAATGTTCGGATTGACTGTTCGACAGATGGCTCGTTACCTCCA 600 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 GCTCCAATAAGCTTCAGTATTGAATGTCCTCTCCCACCAACAGCTGTTGTTGAACACGAT 660 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 CGAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTT 720 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 CGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAA 780 consensus_9531#1 ------------------------------------------------------------ consensus_9531#0 ATTCTACGTCTTGGT---CATGTTTCATCCAGTAAAGATAAT-TTAACTTTGACAGCTCG 836 consensus_9531#1 -------GTTTAGGCACACAAATCTTAACTAATAGATTTGATCTTGGATTCCAATGCTAG 53 ** * ** ** * * * * * ** * * ** ** ** * *** * consensus_9531#0 TCTAACCATTAATGAAAAAGCACACGACTGTCATGTT-GTTTGCCGTTTAGGTGGAAAAG 895 consensus_9531#1 CC--ACCATCCATCTTTGTTTAAA-ACTTATTGTGTTTATTTAAGCTTTAGCTTTATCCA 110 * ***** ** * * * * **** *** ***** * * consensus_9531#0 AGACACGTCGTATATTGACAGTATACTA--TCCAACTACAATATCTTATTTATTGCCACG 953 consensus_9531#1 TAAC---TCATATATTTATGCCTTTGTAGATCCAACTACAATATCTTATTTATTGCCACG 167 ** ** ****** * * ** ****************************** consensus_9531#0 TCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCC 1013 consensus_9531#1 TCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCC 227 ************************************************************ consensus_9531#0 ACCGCCTATGTTGTCCCTCCATCTATCTCAA 1044 consensus_9531#1 ACCGCCTATGTTGT----------------- 241 ************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||