These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 838 fasta sequence [TCATACTGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACA-GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAA-GAATTTTCAGAACT-GAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATT-TATTATAGAAAATAAGACATTTCTAGATACATGTGTTTATCTGCTCGGTTTTACGTACCACTTTTCGAATAAAATATAGGTTTCACAAAAAAAAAAAAAAAA] [+] EMBL CD144059 [TCATACTGTTACTTCAGTATGTCGTCCTTGAGTAGCAAAAAAGGGCTACACA GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCCTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGATATGAC ] [+] EMBL CD178692 [ CATACTGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACA GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCT ] [+] EMBL CD185809 [ TGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACA GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTG ] [+] EMBL CD083031 [ gAAAAAGGGCTACACAGGGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCATGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAA ] [+] EMBL AA883020 [ CTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATG TATCACCCGGCTTGATGATTTAGCAGA ] [-] EMBL AI394798 [ TGGCCCAGGAAAAACTCTATATATCCACTAACTTTTGGTCTTGCATGCTGTGCTGTTGAATGGATGCATATCGCTGGCCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTNTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAA GAATTTTCAGAACT GAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATT TATTATAGAAAATAAGACATTTCTAGATACATGTGTTTATCTGCTCGGTTTTACGTACCACTTTTCGAATAAAATATAGGTTTCACAAAAAAAAAAAAAAAA] [-] EMBL AA999583 [ GATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGGAATTTTCAGAACTGGAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTNACTTGTATTNTATTATAGAAAATAAGACA ] consensusID : consensus_9538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [CCAGGCCAGAATTTGGCACGAGGGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAGTCGATCAAAACTTATAGAAATGGTTTCGGTGGGACAACAAGTGTCGAGAAAGAATTTAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGCTATCTGTAGATAATTTCCAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCAGTATTTTTCTTCTGAGTATATTTTATAATATTAATCGTTTAATTACGCATCACGACTACTGTTATTGCTTTACTTGAATTTATTTCAGTTAAAGTGATCCGTAAGAGTACCGCTTTTCTTCTAGAGAAGTTTATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTTCATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATCCATAGATGTAAAGGTCCTTTTTGTAACTACCGAAGTCGGATTTTTTTGGGTTNTTTTATTGTTGTTTGGTACAATTCTATGCANACCCCTATTTTTGTTTGTGTGTCTATCACATA] [+] EMBL CD081140 [CCAGGCCAGAATTTGGCACGAGGGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAGTCGATCAAAACTTATAGAAATGGTTTCGGTGGGACAACAAGTGTCGAGAAAGAATTTAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGCTATCTGTAGATAATTTCCAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCAGTATTTTTCTTCTGAGTATATTTTATAATATTAATCGTTTAATTACGCATCACGACTACTGTTATTGCTTTACTTGAATTTATTTCAGTTAAAGTGATCCGTAAGAGTACCGCTTTTCTTCTAGAGAAGTTTATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTTCATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATCCATAGATGTAAAGGTCCTTTTTGTAACTACCGAAGTCGGATTTTTTTGGGTTNTTTTATTGTTGTTTGGTACAATTCTATGCANACCCCTATTTTTGTTTGTGTGTCTATCACAT ] [-] EMBL CD074963 [ AAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAGTCGATCAAAACTTATAGAAATGGTTTCGGTGGGACAACAAGTGTCGAGAAAGAATTTAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGCTATCTGTAGATAATTTCCAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCAGTATTTTTCTTCTGAGTATATTTTATAATATTAATCGTTTAATTACGCATCACGACTACTGTTATTGCTTTACTTGAATTTATTTCAGTTAAAGTGATCCGTAAGAGTACCGCTTTTCTTCTAGAGAAGTTTATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTTCATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATCCATAGATGTAAAGGTCCTTTTTGTAACTACCGAAGTCGGATTTTTTTGGGTTTTTTTATTGTTGTTTGGTACAATTCTATGCAAACCCCTATTTTTGTTTGTGTGTATATCACATA] consensusID : consensus_9538#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [TGAAACACACCTATCGTCATTTGATAGAGAATGCGAGCGCCATGTTAAAATGCGTTTACAAAATTAGCGTATTTACAAAATTAGCTCAATTCCAGTGCATTCAGTGACTTTTGAGTGCACGTGGGGCCCTGTATTGCAGCTGCGAAGTTGATTGCGCAAGTCGATAAGTTGGTAACGCAGGTTTCCCAGTCACGACGTTTTAAACGACGTCCATGAATTTAATACGACCCACTTAGTCGAATTGTTACGTGCCCCCCTCGTGACAATTCTCTCTCTCGACTCAACCGAAGTGTTGTATTCAATTGCTCTTGTGCAAATTGTTGTTGTTACTATCATTATTCATATAGTGTTGTACGTGGCTTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGTTGTCCTCCATCTGCTGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATT] [-] EMBL AI618782 [TGAAACACACCTATCGTCATTTGATAGAGAATGCGAGCGCCATGTTAAAATGCGTTTACAAAATTAGCGTATTTACAAAATTAGCTCAATTCCAGTGCATTCAGTGACTTTTGAGTGCACGTGGGGCCCTGTATTGCAGCTGCGAAGTTGATTGCGCAAGTCGATAAGTTGGTAACGCAGGTTTCCCAGTCACGACGTTTTAAACGACGTCCATGAATTTAATACGACCCACTTAGTCGAATTGTTACGTGCCCCCCTCGTGACAATTCTCTCTCTCGACTCAACCGAAGTGTTGTATTCAATTGCTCTTGTGCAAATTGTTGTTGTTACTATCATTATTCATATAGTGTTGTACGTGGCTTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGTTGTCCTCCATCTGCTGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9538#0 TCATACTGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACAGGCTGATT 60 consensus_9538#2 ------------------------------------------------------------ consensus_9538#1 CCAGGCCAGAATTTGGCACGAGGGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATA 60 consensus_9538#0 TATTCATCATACTCGCGACTTTCATCTTCGGAGCCA--AGTCAACCTTCGAAAGTTGATA 118 consensus_9538#2 ------------------------------------------------------------ consensus_9538#1 TATATGTCCCAGGT-TGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTG 119 consensus_9538#0 GTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAA-ACCACAAGGGAAA 177 consensus_9538#2 -----------------TGAAACACACC-TATCGTCATTTGATAGAGAATGCGAGCGCCA 42 consensus_9538#1 CAAAAGAAAATTAAATCTGAAAAACACTTTA-AATCATGGTATAGA-------AGATAAA 171 * * ** ** ** * * * ** * consensus_9538#0 ATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATA 237 consensus_9538#2 TGTTAAAATGCGTTTACAAAATTAGCGTATTTACAAAATTAGCTCA-----ATTCCAGTG 97 consensus_9538#1 TGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAG 231 ** * * **** * * * * consensus_9538#0 TATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCT 297 consensus_9538#2 CATTCAGTGACTTTTGAGTGCACGTGGGGCCCTGTATTGCAGCTGCGAAG---TTGATTG 154 consensus_9538#1 TCGATCAAAACTTATAGAAATGGTTTCGGTG--GGACAACAAGTGTCGAGA--AAGAATT 287 **** * * * * ** * * consensus_9538#0 CGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTT 357 consensus_9538#2 CGCAAGTCGATAAGTTGGTA--ACGCAGGTTTCCCAGTCACGACGTTTTAAACGACGTCC 212 consensus_9538#1 TAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGC-TATCTGTAGATAATTTC 346 * * * *** * * * * * consensus_9538#0 TTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATT-TACAG 416 consensus_9538#2 ATGAATTTAATACGACCCACT-TAGTCGAATTGTTACGTGCCCCCCTCGTGACAATTCTC 271 consensus_9538#1 CAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCA-GTATTTTTCTTCTGAGTATATTT 405 * ** * * ** * consensus_9538#0 CCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTA 476 consensus_9538#2 TCTCTCGACTCAACCGAAGTGTTGTATTCAATT--GCTCTTGTGCAAATTGTTGTTGTTA 329 consensus_9538#1 TATAATA--TTAATCGTTTAATTACGCATCACG--ACTACTGTT---ATTGCTTTACTTG 458 * ** ** * ** *** ** * * ** consensus_9538#0 CTATCATTATTCATATAGTGTTGTACGTGGCT-GTGATCGCATTATCCCAGTTGATATAT 535 consensus_9538#2 CTATCATTATTCATATAGTGTTGTACGTGGCTTGTGATCGCATTATCCCAGTTGATATAT 389 consensus_9538#1 AATTTATTTCAGTTAAAGTGATCCGTAAGAGT----ACCGCTTTTCTTCTAGAGAAGTTT 514 * *** ** **** * * * * *** ** * ** * * consensus_9538#0 ATGTCCCAGGTTGTCC---TCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGC 592 consensus_9538#2 ATGTCCCAG-TTGTCC---TCCATCTGCTGAAGCACTAATGTATTCTATATTACAATTGC 445 consensus_9538#1 ATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTT 574 ** * ** * * * * * * ** * * * ** * * ** consensus_9538#0 AAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAAT 652 consensus_9538#2 AAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAAT 505 consensus_9538#1 CATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATC-CATAGATG-TAAAGGTCCTTTT 632 * * * ** **** * *** *** ***** * **** * * consensus_9538#0 TATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATT 712 consensus_9538#2 TATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATT 565 consensus_9538#1 TGTAACTACCGAAGTCGGATTTTTTTGGGTTNTTTTATTGTTGTTTGGTACAATTCTATG 692 * * ** **** ** **** * * ** * * * ** * ** consensus_9538#0 CACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATTTCTAGATACATGTGT 772 consensus_9538#2 CACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATT--------------- 610 consensus_9538#1 CANACCCCTATTTTTGTTTGTGTGTCTATCACATA------------------------- 727 ** * * *** **** * * * * * * consensus_9538#0 TTATCTGCTCGGTTTTACGTACCACTTTTCGAATAAAATATAGGTTTCACAAAAAAAAAA 832 consensus_9538#2 ------------------------------------------------------------ consensus_9538#1 ------------------------------------------------------------ consensus_9538#0 AAAAAA 838 consensus_9538#2 ------ consensus_9538#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||