These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 942 fasta sequence [TGTTGTGACAAATGTTTTGCAAGATGTCAGTCGGACCGACCATACGCTTTCTCCAACACTTTTACTTTTCGATGATAGTAACGATAACGATGTATTCGCTCCAACAACACCTATTATCCGTGGAAAATTGGTTCCTAAAAGTAATTCAACAATTAACAGAGAATTATTTGAGTCATCTAACTCTCAACATTGGCTATCTTATCGTCAAGATAAAGGTTGTATTCATGGATTAAATGATAGTTTGGAAAATAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAGGAAATGTCCGGTGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGCCCCATTGTACGACTTCTGAAGCGTTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGGCCAGAAGTCTTTAACGACAGACACTATCATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGTTTATGAGCTTAAACTAACCCCCCACCCATNNGACNAAAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGANTAAACAAAAACCAAACCAACATCTGAATTAACANCAAAGCAATTACCACATTACTTCACTAGTATCTANCAAGCGTTGCCTGGNAATGACGACNAGCTANAAGATTTTAACCCGCTTGAGGTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCAAACAATTCTAATTTACCAAATGTATCAACTAACTGAATACGGTCAATCTTTTTTAAACAAGNCCTCTAAATATTACCTTAAATTCTTTATTTTTGGCCAGGGTAAAGAATACCTCCGGGCCGGATATTTTCTTATTGGGATGTTCCAAAGACATTTTACAACGGGGGCTTTAAAT] [+] EMBL CD156435 [TGTTGTGACAAATGTTTTGCAAGATGTCAGTCGGACCGACCATACGCTTTCTCCAACACTTTTACTTTTCGATGATAGTAACGATAACGATGTATTCGCTCCAACAACACCTATTATCCGTGGAAAATTGGTTCCTAAAAGTAATTCAACAATTAACAGAGAATTATTTGAGTCATCTAACTCTCAACATTGGCTATCTTATCGTCAAGATAAAGGTTGTATTCATGGATTAAATGATAGTTTGGAAAATAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAG ] [+] EMBL CD079451 [ gaggTCGTCAAGATAAAGGTTGTATTCATGGATTAAATGATAGTTTGGAAAGTAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAGGAAATGTCCGGTGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGCCCCATTGTACGACTTCTGAAGCGTTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGGCCAGAAGTCTTTAACGACAGACACTATCATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGTTTATGAGCTTAAACTAACCCCCCACCCATNNGACNAAAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGANTAAACAAAAACCAAACCAACATCTGAATTAACANCAAAGCAATTACCACATTACTTCACTAGTATCTANCAAGCGTTGCCTGGNAATGACGACNAGCTANAAGATTTTAACCCGCTTGAGGTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCAAACAATTCTAATTTACCAAATGTATCAACTAACTGAATACGGTCAATCTTTTTTAAACAAGNCCTCTAAATATTACCTTAAATTCTTTATTTTTGGCCAGGGTAAAGAATACCTCCGGGCCGGATATTTTCTTATTGGGATGTTCCAAAGACATTTTACAACGGGGGCTTTAAAT] consensusID : consensus_9546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 780 fasta sequence [TCGTCAAGATAAAGGTTGTATTCATGGATTAAATGATAGTTTGGAAAGTAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAGGAAATGTCCGGTGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGTCCCATTGTACGACTTCTGAAGCGTTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGGCCAGAAGTCTTTAACGACAGACAACATAATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGGTTATGAGTCTGAACTGAGATTTTCAAACAAACGCAGAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGATAAAACAAAAACCAAACCAACATCTGAATTAACAACAAAGCAATTACCACATTACTTCACTAGTATCTACAAAGCGTTGCCTGGAAATGACGACGAGCTAAAAGATTTTAACCCGCTTGAGTTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCAAACAATTTTAAATTTACAAAATGTATTCAACTAACTGAATACGTTCAATCTTTTTTAAACAAGTCCTCATAAATATTTAGCTAATAATATCTTTATATTATGACAAGAGTAAAAGAATAACTACGTGTACAGTATATTTTTCTTATTGGGTATGTTTCCTATGTACATTTTACAATCTGATGCTATATATATTCATACATGTATAAAAAGTTAAA] [+] EMBL CD083513 [TCGTCAAGATAAAGGTTGTATTCATGGATTAAATGATAGTTTGGAAAGTAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAGGAAATGTCCGGTGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGTCCCATTGTACGACTTCTGAAGCGTTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGGCCAGAAGTCTTTAACGACAGACAACATAATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGGTTATGAGTCTGAACTGAGATTTTCAAACAAACGCAGAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGATAA ] [+] EMBL CD078421 [ TAGTTTGGAAAGTAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAGGAAATGTCCGGTGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGTCCCATTGTACGACTTCTGAAGCGTTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGGCCAGAAGTCTTTAACGACAGACAACATAATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGGTTATGAGTCTGAACTGAGATTTTCAAACAAACGCAGAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGATAAAACAAAAACCAAACCAACATCTGAATTAACAACAAAGCAATTACCACATTACTTCACTAGTATCTACAAAGCGTTGCCTGGAAATGACGACGAGCTAAAAGATTTTAACCCGCTTGAGTTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCA ] [-] EMBL CD093832 [ TTCTCCATAGGAAATGTCCGGTGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGTCCCATTGTACGACTTCTGAAGCGTTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGGCCAGAAGTCTTTAACGACAGACAACATAATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGGTTATGAGTCTGAACTGAGATTTTCAAACAAACGCAGAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGATAAAACAAAAACCAAACCAACATCTGAATTAACAACAAAGCAATTACCACATTACTTCACTAGTATCTACAAAGCGTTGCCTGGAAATGACGACGAGCTAAAAGATTTTAACCC ] [-] EMBL CD093834 [ catagGGAAATGTCCGGTGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGTCCCATTGTACGACTTCTGAAGCGTTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGGCCAGAAGTCTTTAACGACAGACAACATAATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGGTTATGAGTCTGAACTGAGATTTTCAAACAAACGCAGAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGATAAAACAAAAACCAAACCAACATCTGAATTAACAACAAAGCAATTACCACATTACTTCACTAGTATCTACAAAGCGTTGCCTGGAAATGACGACGAGCTAAAAGATTTTAACCC ] [-] EMBL CD077085 [ ACAGACAACATAATCCCAATTAGAGATGCCAATTCTACTACCAATAAACTTGTTGGTTATGAGTCTGAACTGAGATTTTCAAACAAACGCAGAATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGATAAAACAAAAACCAAACCAACATCTGAATTAACAACAAAGCAATTACCACATTACTTCACTAGTATCTACAAAGCGTTGCCTGGAAATGACGACGAGCTAAAAGATTTTAACCCGCTTGAGTTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCAAACAATTTTAAATTTACAAAATGTATTCAACTAACTGAATACGTTCAATCTTTTTTAAACAAGTCCTCATAAATATTTAGCTAATAATATCTTTATATTATGACAAGAGTAAAAGAATAACTACGTGTACAGTATATTTTTCTTATTGGGTATGTTTCCTATGTACATTTTACAATCTGATGCTATATATATTCA ] [-] EMBL CD073722 [ ATATCTGCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCACCTGATAAAACAAAAACCAAACCAACATCTGAATTAACAACAAAGCAATTACCCCATTACTTCACTAGTATCTACAAAGCGTTGCCTGGAAATGACGACGAGCTAAAAGATTTTAACCCGCTTGAGTTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCAAACAATTCTAAATTTACAAAATGTATTCAACTAACTGAATACGTTCAATCTTTTTTAAACAAGTCCTCATAAATATTTAGCTAATAATATCTTTATATTATGACAAGAGTAAAAGAATAACTACGTGTACAGTATATTTTTCTTATTGGGTATGTTTCGTATGTACATTTTACAATAAGATGCTATATATATTCATACATGTATAAAAAGTTAAA] consensusID : consensus_9546#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [AGCGTTCCCGAAGATGCGCAGCCTGACACAATATTGGGTCAAGTTCGAGCTGTTGATCGTGATGTTACGAGCGAAGTTCGTTATCATCTGTTGAATTTTCAGGATGTATTCAAGATACATAGTAGAACCGGCAAAATCCGCTTGAAAACAAAATTAGATAGGGAAACTCAAGCAGTCTATGAACTATTGGTGTCTGCAGTCGGCTCTCCTCGTGGAAACCATCAACAGTCCCAATTTAAAATACCATACTTTGATTTTATCCAGGTCTCTCGAGCGGTCGACTATGACGTTCGACGCTCCGCAAATACGCGTGTCCACAT] [+] EMBL CD192205 [AGCGTTCCCGAAGATGCGCAGCCTGACACAATATTGGGTCAAGTTCGAGCTGTTGATCGTGATGTTACGAGCGAAGTTCGTTATCATCTGTTGAATTTTCAGGATGTATTCAAGATACATAGTAGAACCGGCAAAATCCGCTTGAAAACAAAATTAGATAGGGAAACTCAAGCAGTCTATGAACTATTGGTGTCTGCAGTCGGCTCTCCTCGTGGAAACCATCAACAGTCCCAATTTAAAATACCATACTTTGATTTTATCCAGGTCTCTCGAGCGGTCGACTATGACGTTCGACGCTCCGCAAATACGCGTGTCCACAT] consensusID : consensus_9546#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [AATGTGGACACGCGTATTTGCGGAGCGTCGAACGTCATAGTCGACCGCTCGAGAGACCTGGATAAAATCAAAGTATGGTATTTTAAATTGGGACTGTTGATGGTTTCCACGACGGACCGACCATACGCTTTCTCCAACACTTTTACTTTTCGATGATAG] [+] EMBL CD192892 [AATGTGGACACGCGTATTTGCGGAGCGTCGAACGTCATAGTCGACCGCTCGAGAGACCTGGATAAAATCAAAGTATGGTATTTTAAATTGGGACTGTTGATGGTTTCCACGACGGACCGACCATACGCTTTCTCCAACACTTTTACTTTTCGATGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9546#0 TGTTGTGACAAATGTTTTGCAAGATGTCAGTCGGACCGACCATACGCTTTCTCCAACACT 60 consensus_9546#1 ------------------------------------------------------------ consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 TTTACTTTTCGATGATAGTAACGATAACGATGTATTCGCTCCAACAACACCTATTATCCG 120 consensus_9546#1 ------------------------------------------------------------ consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 TGGAAAATTGGTTCCTAAAAGTAATTCAACAATTAACAGAGAATTATTTGAGTCATCTAA 180 consensus_9546#1 ------------------------------------------------------------ consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 CTCTCAACATTGGCTATCTTATCGTCAAGATAAAGGTTGTATTCATGGATTAAATGATAG 240 consensus_9546#1 ---------------------TCGTCAAGATAAAGGTTGTATTCATGGATTAAATGATAG 39 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 TTTGGAAAATAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAGGAAATGTCCGG 300 consensus_9546#1 TTTGGAAAGTAGCCCCGAGCAAACAAACTCAAATATTCATTCTCACGAGGAAATGTCCGG 99 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 TGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGCCCCATTGTACGACTTCTGAAGCG 360 consensus_9546#1 TGGAGGAGACTCAATAGATAAAGCTGTTGTTGTCAGTCCCATTGTACGACTTCTGAAGCG 159 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 TTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGG 420 consensus_9546#1 TTTGACGTTTGTAAGTCCAATGCGTTGGTTAAGAGCAGGTAATCAAGTAGACGGGGATGG 219 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 CCAGAAGTCTTTAACGACAGACACTATCATCCCAATTAGAGATGCCAATTCTACTACCAA 480 consensus_9546#1 CCAGAAGTCTTTAACGACAGACAACATAATCCCAATTAGAGATGCCAATTCTACTACCAA 279 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ----------------------AGCGTTCCCGAAGATGCGCAGCCTGACACAATATTGGG 38 consensus_9546#0 TAAACTTGTTGTTTATGAGCTTAAACTAACCCCCCACCCATNNGACNA-AAAT---ATCT 536 consensus_9546#1 TAAACTTGTTGGTTATGAGTCTGAACTGAGATTTT-CAAACAAACGCA-GAAT---ATCT 334 consensus_9546#3 --------------------------------------AATGTGGACACGCGT---ATTT 19 consensus_9546#2 TCAAGTTCGAGCTGTTGATCGTGATGTTACGAGCGAAGTTCGTTATCATCTGTTGAATTT 98 * * ** * consensus_9546#0 GCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCA 596 consensus_9546#1 GCATCAAGCATTCACAGCTTAGATTCGCCTTTGGAAAAACCTGGTGGCAAGAAACACTCA 394 consensus_9546#3 GCG--GAGCGTCGAACGTCATAGTCGACCGCTCGAGAGACCTGGATAAAATCAAAGTATG 77 consensus_9546#2 TCAGGATGTATTCAAGATACATAGTAGA-ACCGGCAAAATCCGCTTGAAAACAAAATTAG 157 * * * * * * * * * ** ** consensus_9546#0 CCTGANTAAACAAAA-ACCAAACCAACATCTGA-ATTAACANCAAAGCAATTACCACATT 654 consensus_9546#1 CCTGATAAAACAAAA-ACCAAACCAACATCTGA-ATTAACAACAAAGCAATTACCACATT 452 consensus_9546#3 GTATTTTAAATTGGG-ACT--GTTGATGGTT----TCCACGACGGACCGACCATACGCTT 130 consensus_9546#2 ATAGGGAAACTCAAGCAGTCTATGAACTATTGGTGTCTGCAGTCGGCTCTCCTCGTGGAA 217 ** * * * * * consensus_9546#0 ACT-TCACTAGT----ATCTANCAAGCGTTGCCTGGNAATGACGACNAGCTANAAGATTT 709 consensus_9546#1 ACT-TCACTAGT----ATCTACAAAGCGTTGCCTGGAAATGACGACGAGCTAAAAGATTT 507 consensus_9546#3 TCT-CCAACACT-----TTTACTTTTCGATGATAG------------------------- 159 consensus_9546#2 ACCATCAACAGTCCCAATTTAAAATACCATACTTTGATTTTATCCAGGTCTCTCGAGCGG 277 * ** * * * ** * * consensus_9546#0 TAACCCGCTTGAGGTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCAAA 769 consensus_9546#1 TAACCCGCTTGAGTTGCCACTTCAAAGAACTACGCCATCTCTTTTACTATCCATGCCAAA 567 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 TCGACTATGACGTTCGACGCTCCGCAAATACGCGTGTCCACAT----------------- 320 consensus_9546#0 CAATTCTAA-TTTACCAAATGTAT-CAACTAACTGAATACGGTCAATCTTTTTTAAACAA 827 consensus_9546#1 CAATTTTAAATTTACAAAATGTATTCAACTAACTGAATACGTTCAATCTTTTTTAAACAA 627 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 GNCCTC-TAAATATT-ACCT--TAAATTCTTTATTTT-TGGCCAGGGTAAA-GAATACCT 881 consensus_9546#1 GTCCTCATAAATATTTAGCTAATAATATCTTTATATTATGACAAGAGTAAAAGAATAACT 687 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 CCGGGCCGGATAT---TTTCTTATTGGG-ATGTTCC--AAAGACATTTTACAA-CGGGGG 934 consensus_9546#1 ACGTGTACAGTATATTTTTCTTATTGGGTATGTTTCCTATGTACATTTTACAATCTGATG 747 consensus_9546#3 ------------------------------------------------------------ consensus_9546#2 ------------------------------------------------------------ consensus_9546#0 CTTTAAAT------------------------- 942 consensus_9546#1 CTATATATATTCATACATGTATAAAAAGTTAAA 780 consensus_9546#3 --------------------------------- consensus_9546#2 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||