These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 913 fasta sequence [TTTCCTTCCATGACCATCCCGAGGAGGTCGGAAACTCCTATAGTCAACACTGAGTACGCCAGTTTCTTCACTAATATGGCGTAAAGTTTTCGCATCGAAATTATCCCGTTTTTCAACTAATAAACTGGTTTCATCCAACACAATATTTCCATTGGCATCAATTCGCAGTTGAGGAGCTAATGGATCCGAATAAACATCACTCGATGAACACTTTGCGGAGTTTTCCTTCAAATCAGGAGTTTCAGTGTTATTGTCATGAGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAACTTGTCTAGTAGTAAATTGTATAAACAGAACTTACGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG] [+] EMBL CD097259 [TTTCCTTCCATGACCATCCCGAGGAGGTCGGAAACTCCTATAGTCAACACTGAGTACGCCAGTTTCTTCACTAATATGGCGTAAAGTTTTCGCATCGAAATTATCCCGTTTTTCAACTAATAAACTGGTTTCATCCAACACAATATTTCCATTGGCATCAATTCGCAGTTGAGGAGCTAATGGATCCGAATAAACATCACTCGATGAACACTTTGCGGAGTTTTCCTTCAAATCAGGAGTTTCAGTGTTATTGTCATGAGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAACTTGTCTAGTAGTAAATTGTATAAACAGAACTTACGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGgt ] [-] EMBL CD093860 [ AGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTATAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCCTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCTCAAGGTGACG] [-] EMBL CD093853 [ ACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATACGTGTCTTAACTTGTTTTATCGATGGTCTGAATACCTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG] [-] EMBL CD093870 [ GAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTCCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG] [-] EMBL AI976058 [ GTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGG ] [-] EMBL CD093851 [ TACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG] consensusID : consensus_9550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 431 fasta sequence [TTATTGTCATGTGATTTGAGGTCATGATCACTTGCTT-CCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACATCTGATTAGG] [+] EMBL CD067048 [TTATTGTCATGTGATTTGAGGTCATGATCACTTGCTT CCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTACGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACATCTGATT ] [-] EMBL CD067366 [ TATTGTCATGTGATTGAAGGTCAGGATCATTTGCTTCCCAGGTCATTATTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGAAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGTTGTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACAT ] [+] EMBL CD170994 [ GCTT CCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGG] consensusID : consensus_9550#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [GACACAACAAAAGACAGGTTTTTAGGTTGAGGAGTTACTGACTCAGGATAAGTTTTTCCGACTGAGATTGGCCAGTAGCAGACATTCGAACGAACTTACAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACGGCCTACACCAAAGGCCAGACGAGTGACGCAAGAAT] [+] EMBL CD185993 [GACACAACAAAAGACAGGTTTTTAGGTTGAGGAGTTACTGACTCAGGATAAGTTTTTCCGACTGAGATTGGCCAGTAGCAGACATTCGAACGAACTTACAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACGGCCTACACCAAAGGCCAGACGAGTGACGCAAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9550#0 TTTCCTTCCATGACCATCCCGAGGAGGTCGGAAACTCCTATAGTCAACACTGAGTACGCC 60 consensus_9550#1 ------------------------------------------------------------ consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 AGTTTCTTCACTAATATGGCGTAAAGTTTTCGCATCGAAATTATCCCGTTTTTCAACTAA 120 consensus_9550#1 ------------------------------------------------------------ consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 TAAACTGGTTTCATCCAACACAATATTTCCATTGGCATCAATTCGCAGTTGAGGAGCTAA 180 consensus_9550#1 ------------------------------------------------------------ consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 TGGATCCGAATAAACATCACTCGATGAACACTTTGCGGAGTTTTCCTTCAAATCAGGAGT 240 consensus_9550#1 ------------------------------------------------------------ consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 TTCAGTGTTATTGTCATGAGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAG 300 consensus_9550#1 -------TTATTGTCATGTGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAG 53 consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 TGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAACTTGTCTAGTAGTAAATTGTATA 360 consensus_9550#1 TGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAA----------------------- 90 consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 AACAGAACTTACGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGA 420 consensus_9550#1 ------------GTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGA 138 consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 GTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACT 480 consensus_9550#1 GTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACT 198 consensus_9550#2 --------GACACAA-CAAAAGACAGGTTTTTAGGTTGAGGAGTTACTG----------- 40 * * * *** ** * * * *** * * * *** consensus_9550#0 TTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGA 540 consensus_9550#1 TTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGA 258 consensus_9550#2 --ACTCAGGATAAGTTTTTCCGACTGAGATTGGCCAGTAG------CAGACATTCGAACG 92 * ** * * * ** * ** * ** ** * ** * * consensus_9550#0 GACCTTTCAGAATCAACACGAACATCTAGGT---CAGGGTCGGTCAATCTCGGAGTAGCT 597 consensus_9550#1 GACCTTTCAGAATCAACACGAACATCTAGGT---CAGGGTCGGTCAATCTCGGAGTAGCT 315 consensus_9550#2 AACTT---ACAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGT 149 ** * * ** * * ** *** * * ** * * * * * ** * consensus_9550#0 GTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTA 657 consensus_9550#1 GTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTA 375 consensus_9550#2 CCTCTTGGTATTATATACTAAGCTTCCCAAGG---TGACGGCCTACACCAAAGGCCAGAC 206 * * ** ** * ** * * **** ** * ** * * * ** consensus_9550#0 GTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTG 717 consensus_9550#1 GTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACATCTGATTAGG---- 431 consensus_9550#2 G-AGTGACGCAAGAAT-------------------------------------------- 221 * * *** *** ** consensus_9550#0 ATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGT 777 consensus_9550#1 ------------------------------------------------------------ consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 CTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTG 837 consensus_9550#1 ------------------------------------------------------------ consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 TGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAA 897 consensus_9550#1 ------------------------------------------------------------ consensus_9550#2 ------------------------------------------------------------ consensus_9550#0 GCTTCCCAAGGTGACG 913 consensus_9550#1 ---------------- consensus_9550#2 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||