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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1524 fasta sequence
[AGTGACGGTACCAATGAATCCTCCTCGGTTTTTGTGCAGTGTTTGCAATGTTTGGTGTGACACTGAGAATGTCCTACGACTGCATGAAATGGGGAAAAAACATCGCTCTAAATGTCTTGTTCTAGACAGTTTAAACACAAGGGATCACATTGATTACCCTCTAAAAATTTCCTTACCAACACTGGTTACTCCTGATTCGGGCTCGCCGAGAGATTCACTTCTAGATACCAGCTCTTATTCTACGGGGACAGTGAGAAATTCAACCTGTGATCAAAAATCGCCTTTATATGTAGGTTTCATTGATTCTAGTTCAAATTGGACAAAGTCAAACGAGTTATCTTCAGCTTCTGAAATTTCTTTTAACTGCAACTTATGCGGTATACATTTGAATTCTTCCGATCAATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA-TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTTGTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTATTCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTACCGTTATCGTCAACATTTTACAAACCAAGCTAATCGAGGCCGAATTATATGTTTTGGTCAGATGAAAGTAGAAGATGACAGTGTATTTTCATCGTTCACGCAGTATGGTTAGAAGAAAAAAAAAGGACAAAATTCTTGAACAAATAAAATATACATAGAAATATATTATAACAGATTATTATAAATCATAAGAGAATAATTATTTGAACAATATAGATTTAAACCATTTTTTTTCATTTTGCTACTATTATCATTGAACAGATATATTTATTAATTACATTTATTTCCTATTTTCTTTTTTTTATTCGTTACCTAGAAAATAAAATAAAATTG]
[+] EMBL CD082729 [AGTGACGGTACCAATGAATCCTCCTCGGTTTTTGTGCAGTGTTTGCAATGTTTGGTGTGACACTGAGAATGTCCTACGACTGCATGAAATGGGGAAAAAACATCGCTCTAAATGTCTTGTTCTAGACAGTTTAAACACAAGGGATCACATTGATTACCCTCTAAAAATTTCCTTACCAACACTGGTTACTCCTGATTCGGGCTCGCCGAGAGATTCACTTCTAGATACCAGCTCTTATTCTACGGGGACAGTGAGAAATTCAACCTGTGATCAAAAATCGCCTTTATATGTAGGTTTCATTGATTCTAGTTCAAATTGGACAAAGTCAAACGAGTTATCTTCAGCTTCTGAAATTTCTTTTAACTGCAACTTATGCGGTATACATTTGAATTCTTCCGATCAATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAAatg ]
[+] EMBL CD182262 [ TTCTTTTAACTGCAACTTATGCGGTATATATTTGAATTCTTCCGATCAATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGC ]
[+] EMBL BG932455 [ ATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACTCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCT ]
[+] EMBL CD156821 [ AAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACANAA ]
[+] EMBL CD156819 [ AAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATANAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACA ]
[+] EMBL CD157039 [ AAAATAAATGCTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCGGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCANAATAGAAAAATCCTCAGCTAATTCGATTTCCATTATTC GATCCCAAT ]
[-] EMBL CD115792 [ TCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACtg ]
[-] EMBL CD162385 [ CTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGTTACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTTGTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTATTCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTAC ]
[-] EMBL CD076320 [ TAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTTGTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTATTCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTACCGTTATCGTCAACATTTTACAAACCAAGCTAATCGAGGCCGAATTATATGTTTTGGTCAGATGAAAGTAGAAGATGACAGTGTATTTTCATCGTTCACGCAGTATGGTTAGAAGAAAAAAAAAGGACAAAATTCTTGAACAAATAAAATATACATAGAAATATATTATAACAGATTATTATAAATCATAAGAGAATAATTATTTGAACAATATAGATTTAAACCATTTTTTTTCATTTTGCTACTATTATCATTGAACAGATATATTTATTAATTACATTTATTTCCTATTTTCTTTTTTTTATTCGTTACCTAGAAAATAAAATAAAATTG]
consensusID : consensus_9557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence
[GGGGACGATAACGGTAAGGGAGCTTGCAAAACTCTTCGTTTTTTAACGCTGGACCGACATCATGAATAATTATGCCACAGATAAATGCTTGGTTTGTAAAATGCTGACGATAACGGTAAAGGAGCTT]
[+] EMBL CD092520 [GGGGACGATAACGGTAAGGGAGCTTGCAAAACTCTTCGTTTTTTAACGCTGGACCGACATCATGAATAATTATGCCACAGATAAATGCTTGGTTTGTAAAATGCTGACGATAACGGTAAAGGAGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9557#0 AGTGACGGTACCAATGAATCCTCCTCGGTTTTTGTGCAGTGTTTGCAATGTTTGGTGTGA 60
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 CACTGAGAATGTCCTACGACTGCATGAAATGGGGAAAAAACATCGCTCTAAATGTCTTGT 120
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TCTAGACAGTTTAAACACAAGGGATCACATTGATTACCCTCTAAAAATTTCCTTACCAAC 180
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 ACTGGTTACTCCTGATTCGGGCTCGCCGAGAGATTCACTTCTAGATACCAGCTCTTATTC 240
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TACGGGGACAGTGAGAAATTCAACCTGTGATCAAAAATCGCCTTTATATGTAGGTTTCAT 300
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TGATTCTAGTTCAAATTGGACAAAGTCAAACGAGTTATCTTCAGCTTCTGAAATTTCTTT 360
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TAACTGCAACTTATGCGGTATACATTTGAATTCTTCCGATCAATATATATCTCATCTTCG 420
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGA 480
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATAT 540
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCG 600
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 ATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTC 660
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 CCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATC 720
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 AATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGA 780
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAA 840
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCC 900
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCAT 960
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 ATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTA 1020
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 CTTACCTTGTGATACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTT 1080
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 GTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTAT 1140
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTACCGTTATCG 1200
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TCAACATTTTACAAACCAAGCTAATCGAGGCCGAATTATATGTTTTGGTCAGATGAAAGT 1260
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 AGAAGATGACAGTGTATTTTCATCGTTCACGCAGTATGGTTAGAAGAAAAAAAAAGGACA 1320
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 AAATTCTTGAACAAATAAAATATACATAGAAATATATTATAACAGATTATTATAAATCAT 1380
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 AAGAGAATAATTATTTGAACAATATAGATTTAAACCATTTTTTTTCATTTTGCTACTATT 1440
consensus_9557#1 ----------------GGGGACGATAACGGTAAGGGAGCTTGCAAAACTCTTCGTTTTTT 44
* * *** *** * ** * * * * * **
consensus_9557#0 ATCATTGAACAGATATATTTATTAATTACATTTATTTCCTATTTTCTTTTTTTTATTCGT 1500
consensus_9557#1 AACGCTGGACCGACATCATGAATAATTATGCCACAGATAAATGCTTGGTTTGTAAAATGC 104
* * ** ** ** ** * * ****** ** * *** * * *
consensus_9557#0 TACCTAGAAAATAAAATAAAATTG 1524
consensus_9557#1 TGACGATAACGGTAAAGGAGCTT- 127
* * * ** *** * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||