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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1689 fasta sequence
[CCTACGAGGCCANAATTCGGCACGAGGGCACATGTTCGTTGAATTATTTTTTGTCATGACAGTAACAACTGTCGGTTGATGTGACATGTTTCTGGCTAACTTCGGAGAATTTCTATATAAACCCAAATAAAGTGTCTTCAGCACTAAACACCGAATATTCGTACAAGAAATGAAGAAGTCGAAGACATCAAACGTCATTTCAACCATATCTCAGAAACAGCTGAAGGAGATTCATGGATATTTTGCACGCCAAAATGGAATTAGACAGGAAACACATGAAAATGGGACCGCATTGGGATCATTAGGGTTAAGGTCAAAGCCCTCAGACAATGAAGCCATTATAGATTCCGTCTTAAAAGATGTCATTGACTTAAACCGTGATAAACTTCCAGAATCATCATTGGTAAAGGTCCTCACTTCAGTATATCCAGACGCAAAATCAAAGCTTGGGGCCGATGGATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACAGCAAACGAAACCAATGTGACATGTCAGCCTCAGACAAAAACAAACATCAGTGGAATGAAGATGTAGCTAACTTGTCAACTTCAATTACTTACAACTTATGGAATAAACAACCTGATTGTTTGAATACACATGATTTTCGTAAACTAGAGGCTTCAAATATTCTTCCGGATACTAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGTCCCAACACAATTAACAACAATCGAATGGGTAATGTCCCTGCTCTTACCCCTATGGCTTTTGGTTCCGGACAAGATTCTCACTTGTCAAAACAGGAAGAGAATCGTCGACAGTGGAAGGCTGCATTAGATGAACAACTAAAAGAACAGCAACTTATGCGAGGCAAAAATCCTCAGGAACTACAAAAGGAGTGCGGATTCAATAAAATTCATTCAGGATCTTCTTCAAGTAACCGGGGACATTGCGACAACTCAACTGCATTTCATGAATTAAGTACATCAAACAACCAGTTTAACAGCGCATTGGCATCACATCCTTCGGCTAGTCATTTTATGTCATCAGGTTTCTTTTTACCTGATTCAACTGTTACCAACAGTTTCCAACCATCCCCTGGAAAAAAAGATAATCTTAATCAACCTTGGAAAGTTGGTTTTAATCGTGTTCGAGGTTTTACTCAACAGCTGTATACAGATTCTTTGGAATCCGCTGAACGTGCGCGACTTGCTCACGAAACTAGATTGATAAATTTGAAACAGATTGAAGAAAAACGTCGTCTTAAAGAAGAAGAAAAAGCAAGACTCCTCATGGAAGAGAAAATGGAAGAAGAGCGTATCTCACGTGAACGTCTTCGTTTACAACAAATGGCCGAGGTTGAAAATGCTCGAAAGATAGCAAAAGATATGGAAGAATTTCAACGTACACAATACTTATATGAGTCACTTGTTCGCGCTCAAGAAGAAGCAAAGCTGTCTAAAATTCAAAAACATCCATGTCATTCTGAATTAAAACGAAACAGGGATTCATTAAGTCAACAATCCGTCATACAGTCTGAATTACTTGCCCCATATTGGTCTGTTGCATCCGTTGTTGAAAAACAGAGTCAAATTAATCCATTGTATGCTTTCCTATCTTCCATCAGTT]
[+] EMBL CD083185 [CCTACGAGGCCANAATTCGGCACGAGGGCACATGTTCGTTGAATTATTTTTTGTCATGACAGTAACAACTGTCGGTTGATGTGACATGTTTCTGGCTAACTTCGGAGAATTTCTATATAAACCCAAATAAAGTGTCTTCAGCACTAAACACCGAATATTCGTACAAGAAATGAAGAAGTCGAAGACATCAAACGTCATTTCAACCATATCTCAGAAACAGCTGAAGGAGATTCATGGATATTTTGCACGCCAAAATGGAATTAGACAGGAAACACATGAAAATGGGACCGCATTGGGATCATTAGGGTTAAGGTCAAAGCCCTCAGACAATGAAGCCATTATAGATTCCGTCTTAAAAGATGTCATTGACTTAAACCGTGATAAACTTCCAGAATCATCATTGGTAAAGGTCCTCACTTCAGTATATCCAGACGCAAAATCAAAGCTTGGGGCCGATGGATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACAGCAAACGAAACCAATGTGACATGTCAGCCTCAGACAAAAACAAACATCAGTGGAATGAAGATGTAGCTAACTTGTCAACTTCAATTACTTACAACTTATGGAATAAACAACCTGATTGGTTG ATACACATGATTTTCGTAAACTA ]
[+] EMBL CD153361 [ ATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACAGCAAACGAAACCAATGTGACATGTCAGCCTCAGACAAAAACAAACATCAGTGGAATGAAGATGTAGCTAACTTGTCAGCTTCAATTACTTACAACTTATGGAATAAACAACCTGATTGTTTGAATACACATGATTTTCGTAAACTAGAGGCTTCAAATATTCTTCCGGATACTAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGTCCCAACACAATTAACAGCAATCGAATGGGTAATGTCCCTGCTCTTACCCCTATGGCTTTTGGTTCCGGACAAGATTCTCACCCGTCACGACAGGAAGAGAATCGTCGACAGTGGAAGGCTGCATTAGATGAGCAACTAAAAGAACAGCAACTTATGCGAG ]
[+] EMBL CD153018 [ ATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACAGCAAACGAAACCAATGTGACATGTCAGCCTCAGACAAAAACAAACATCAGTGGAATGAAGATGTAGCTAACTTGTCAACTTCAATTACTTACAACTTATGGAATAAACAACCTGATTGTTTGAATACACATGATTTTCGTAAACTAGAGGCTTCAAATATTCTTCCGGATACTAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGTCCCAACACAATTAACAACAATCGAATGGGTAATGTCCCTGCTCTTACCCCTATGGCTTTTGGTTCCGGACAAGATTCTCACTTGTCAAAACAGGAAGAGAATCGTCGACAGTGGAAGGCTGCATTAGATGAACAACTAAAAGAACAGCAACTTATGCGAGGCANAAATCCTCAGGAACTACAAAAGGAGTGCGGATTCAATAAAATTCATTCAGGATCTTCTTCAAGTAACCGGGGACATTGCGACAACTCAACTGCATTTCATGAATTAAGTA ]
[+] EMBL CD153329 [ ATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACAGCAAACGAAACCAATGTGACATGTCAGCCTCACTCAAAAACAAACATCAGTGGAATGAAGATGTAGCTAACTTGTCAACTTCAATTACTTACAACTTATGGAATAAACAACCTGATTGTTTGAATACACATGATTTTCGTAAACTAGAGGCTTCAAATATTCTTCCGGATACTAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGTCCCAACACAATTAACAACAATCGAATGGGTAATGTCCCTGCTCTTACCCCTATGGCTTTTGGTTCCGGACAAGATTCTCACTTGTCAAAACAGGAAGAGAATCGTCGACAGTGGAAGGCTGCATTAGATGAACACCTAAAAGAACAGCAACTTATGCGAGCCAAANATCCTCAGGAACTACAAAAGGAGTGCGGATTCAATAAAATTCATTCAGGA ]
[+] EMBL CD153101 [ ATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACAGCAAACGAAACCAATGTGACATGTCAGCCTCAGACAAAAACAAACATCAGTGGAATGAAGATGTAGCTAACTTGTCAACTTCAATTACTTACAACTTATGGAATAAACAACCTGATTGTTTGAATACACATGATTTTCGTAAACTAGAGGCTTCAAATATTCTTCCGGATACTAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGTCCCAACACAATTAACAACAATCGAATGGGTAATGTCCCTGCTCTTACCCCTATGGCTTTTGGTTCCGGACAAGATTCTCACTTGTCAAAACAGGAAGAGAATCGTCGACAGTGGAAGGCTGCATTAGATGAACAACTAAAAGAACAGCAACTTATGCGAGGCAAAAATCCTCAGGAACTACAAAAGGAGTGCGGATTCAAT AAATTCATTCAGGATCTTCTTCAAGTAACCGGGGACATTGCGANCACTCAACT ]
[-] EMBL CD153148 [ TAACTTGTCANCTTCAATTACTTACAACTTATGGAATAANCAACCTGATTGTTTGAATACACATGATTTTCGTAAACTAGAGGCTTCAAATATTCTTCCGGATACTAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGTCCCAACACAATTAACAACAATCGAATGGGTAATGTCCCTGCTCTTACCCCTATGGCTTTTGGTTCCGGACAAGATTCTCACTTGTCAAAACAGGAAGAGAATCGTCGACAGTGGAAGGCTGCATTAGATGAACAACTAAAAGAACAGCAACTTATGCGAGGCAAAAATCCTCAGGAACTACAAAAGGAGTGCGGATTCAATAAAATTCATTCAGGATCTTCTTCAAGTAACCGGGGACATTGCGACAACTCAACTGCATTTCATGAATTAAGTACATCAAACAACCAGTTTAACAGCGCATTGGCATCACATCCTTCGGCTAGTCATTTTATGTCATCAGGTTTCTTTTTACCTGATTCAACTGTTACCAACAGTTTCCAACCATCCCCTGGAAAAAAAGATAATCTTAATCAACCTTGGAAAGTTGGTTTTAATCGTGTTCGA ]
[-] EMBL CD076759 [ TAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGTCCCAACACAATTAACAACAATCGAATGGGTAATGTCCCTGCTCTTACTCCTATGGCTTTTGGTTCCGGACAAGATTCTCACTTGTCAAAACAGGAAGAGAATCGTCGATAGTGGAAGGCTGCATTAGATGAACAACTAAAAGAACAGCAACTTATGCGAGGCAAAAATCCTCAGGAACTACAAAAGGAGTGCGGATTCAATAAAATTCATTCAGGATCTTCTTCAAGTAACCGGGGACATTGCGACAACTCAACTGCATTTCATGAATTAAGTACATCAAACAACCAGTTTAACAGCGCATTGGCATCACATCCTTCGGCTAGTCATTTTATGTCATCAGGTTTCTTTTTACCTGATTCAACTGTTACCAACAGTTTCCAACCATCCCCTGGAAAAAAAGATAATCTTAATCAACCTTGGAAAGTTGGTTTTAATCGTGTTCGAGGTTTTACTCAACAGCTGTATACAGATTCTTTGGAATCCGCTGAACGTGCGCGACTTGCTCACGAAACTAGATTG ]
[+] EMBL CD121771 [ GAACAACTAAAAGAACAGCAACTTATGCGAGGCAAAAATCCTCAGGAACTACAAAAGGAGTGCGGATTCAATAAAATTCATTCAGGATCTTCTTCAAGTAACCGGGGACATTGCGACAACTCAA ]
[+] EMBL AI976165 [ TCAACCTTGGAAAGTTGGTTTTAATCGTGTTCGAGGTTTTACTCAACAGCTGTATACAGATTCTTTGGAATCCGCTGAACGTGCGCGACTTGCTCACGAAACTAGATTGATAAATTTGAAACAGATTGAAGAAAAACGTCGTCTTAAAGAAGAAGAAAAAGCAAGACTCCTCATGGAAGAGAAAATGGAAGAAGAGCGTATCTCACGTGAACGTCTTCGTTTACAACAAATGGCCGAGGTTGAAAATGCTCGAAAGATAGCAAAAGATATGGAAGAATTTCAACGTACACAATACTTATATGAGTCACTTGTTCGCGCTCAAGAAGAAGCAAAGCTGTCTAAAATTCAAAAACATCCATGTCATTCTGAATTAAAACGAAACAGGGATTCATTAAGTCAACAATCCGTCATACAGTCTGAATTACTTGCCCCATATTGGTCTGTTGCATCCGTTGTTGAAAAACAGAGTCAAATTAATCCATTGTATGCTTTCCTATCTTCCATCAGTT]
consensusID : consensus_9561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[GTAACAACTGTCGGTTGATGTGACATGTTTCTGGCTAACTTCGTAGGTTCTCTCATATGAAATATAACCGTGAAAATAAGGGAGAATTTCTATATAAACCCAAATAAAGTGTCTTCAGCACTAAACACCGAATATTCGTACAAGAAATGAAGAAGTCGAAGACATCAAACGTCATTTCAACCATATCTCAGAAACAGCTGAAGGAGATTCATGGATATTTTGCAACCCCAAAATGGAATTAGACAGGAAACACATGAAAATGGGACCGCATTGGGATCATTAGGGTTAAGGTCAAAGCCCTCAGACAATGAAGCCATTATAGATTCCGTCTTAAAAGATGTCATTGACTTAAACCGTGATAAACTTCCAGAATCATCATTGGTAAAGGTCCTCACTTCAGTATATCCAGACGCAAAATCAAAGCTTGGGGCCGATGTGTCACAGGATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACA]
[+] EMBL AI975918 [GTAACAACTGTCGGTTGATGTGACATGTTTCTGGCTAACTTCGTAGGTTCTCTCATATGAAATATAACCGTGAAAATAAGGGAGAATTTCTATATAAACCCAAATAAAGTGTCTTCAGCACTAAACACCGAATATTCGTACAAGAAATGAAGAAGTCGAAGACATCAAACGTCATTTCAACCATATCTCAGAAACAGCTGAAGGAGATTCATGGATATTTTGCAACCCCAAAATGGAATTAGACAGGAAACACATGAAAATGGGACCGCATTGGGATCATTAGGGTTAAGGTCAAAGCCCTCAGACAATGAAGCCATTATAGATTCCGTCTTAAAAGATGTCATTGACTTAAACCGTGATAAACTTCCAGAATCATCATTGGTAAAGGTCCTCACTTCAGTATATCCAGACGCAAAATCAAAGCTTGGGGCCGATGTGTCACAGGATACAACACAGCAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCCGATCCAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9561#0 CCTACGAGGCCANAATTCGGCACGAGGGCACATGTTCGTTGAATTATTTTTTGTCATGAC 60
consensus_9561#1 ------------------------GTAACAACTGTCGGTTGATGTGACATGTTTCTGGCT 36
** *** ***** * * * ** *
consensus_9561#0 AGTAACAACTGTCGGTTGATGTGACATGTTTCTG-GCTAACTTCGGAGAATTTCTATATA 119
consensus_9561#1 AACTTCGTAGGTTCTCTCATATGAAATATAACCGTGAAAATAAGGGAGAATTTCTATATA 96
* * ** * ** *** ** * * * * ** ****************
consensus_9561#0 AACCCAAATAAAGTGTCTTCAGCACTAAACACCGAATATTCGTACAAGAAATGAAGAAGT 179
consensus_9561#1 AACCCAAATAAAGTGTCTTCAGCACTAAACACCGAATATTCGTACAAGAAATGAAGAAGT 156
************************************************************
consensus_9561#0 CGAAGACATCAAACGTCATTTCAACCATATCTCAGAAACAGCTGAAGGAGATTCATGGAT 239
consensus_9561#1 CGAAGACATCAAACGTCATTTCAACCATATCTCAGAAACAGCTGAAGGAGATTCATGGAT 216
************************************************************
consensus_9561#0 ATTTTGCA-CGCCAAAATGGAATTAGACAGGAAACACATGAAAATGGGACCGCATTGGGA 298
consensus_9561#1 ATTTTGCAACCCCAAAATGGAATTAGACAGGAAACACATGAAAATGGGACCGCATTGGGA 276
******** * *************************************************
consensus_9561#0 TCATTAGGGTTAAGGTCAAAGCCCTCAGACAATGAAGCCATTATAGATTCCGTCTTAAAA 358
consensus_9561#1 TCATTAGGGTTAAGGTCAAAGCCCTCAGACAATGAAGCCATTATAGATTCCGTCTTAAAA 336
************************************************************
consensus_9561#0 GATGTCATTGACTTAAACCGTGATAAACTTCCAGAATCATCATTGGTAAAGGTCCTCACT 418
consensus_9561#1 GATGTCATTGACTTAAACCGTGATAAACTTCCAGAATCATCATTGGTAAAGGTCCTCACT 396
************************************************************
consensus_9561#0 TCAGTATATCCAGACGCAAAATCAAAGCTTGGGGCCGATG--------GATACAACACAG 470
consensus_9561#1 TCAGTATATCCAGACGCAAAATCAAAGCTTGGGGCCGATGTGTCACAGGATACAACACAG 456
**************************************** ************
consensus_9561#0 CAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCC 530
consensus_9561#1 CAGAGCTTGGTTCGCATCTCCCAGAATGCTGCTAAAATTCCTTTAGATTCGAAGATGCCC 516
************************************************************
consensus_9561#0 GATCCAAACAGCAAACGAAACCAATGTGACATGTCAGCCTCAGACAAAAACAAACATCAG 590
consensus_9561#1 GATCCAAACA-------------------------------------------------- 526
**********
consensus_9561#0 TGGAATGAAGATGTAGCTAACTTGTCAACTTCAATTACTTACAACTTATGGAATAAACAA 650
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 CCTGATTGTTTGAATACACATGATTTTCGTAAACTAGAGGCTTCAAATATTCTTCCGGAT 710
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 ACTAAAGTTGATTTCCCAATCGGCAAATCTAATCCCGAGTCCACAGAAAAACTTTCTAGT 770
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 CCCAACACAATTAACAACAATCGAATGGGTAATGTCCCTGCTCTTACCCCTATGGCTTTT 830
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 GGTTCCGGACAAGATTCTCACTTGTCAAAACAGGAAGAGAATCGTCGACAGTGGAAGGCT 890
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 GCATTAGATGAACAACTAAAAGAACAGCAACTTATGCGAGGCAAAAATCCTCAGGAACTA 950
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 CAAAAGGAGTGCGGATTCAATAAAATTCATTCAGGATCTTCTTCAAGTAACCGGGGACAT 1010
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 TGCGACAACTCAACTGCATTTCATGAATTAAGTACATCAAACAACCAGTTTAACAGCGCA 1070
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 TTGGCATCACATCCTTCGGCTAGTCATTTTATGTCATCAGGTTTCTTTTTACCTGATTCA 1130
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 ACTGTTACCAACAGTTTCCAACCATCCCCTGGAAAAAAAGATAATCTTAATCAACCTTGG 1190
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 AAAGTTGGTTTTAATCGTGTTCGAGGTTTTACTCAACAGCTGTATACAGATTCTTTGGAA 1250
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 TCCGCTGAACGTGCGCGACTTGCTCACGAAACTAGATTGATAAATTTGAAACAGATTGAA 1310
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 GAAAAACGTCGTCTTAAAGAAGAAGAAAAAGCAAGACTCCTCATGGAAGAGAAAATGGAA 1370
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 GAAGAGCGTATCTCACGTGAACGTCTTCGTTTACAACAAATGGCCGAGGTTGAAAATGCT 1430
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 CGAAAGATAGCAAAAGATATGGAAGAATTTCAACGTACACAATACTTATATGAGTCACTT 1490
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 GTTCGCGCTCAAGAAGAAGCAAAGCTGTCTAAAATTCAAAAACATCCATGTCATTCTGAA 1550
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 TTAAAACGAAACAGGGATTCATTAAGTCAACAATCCGTCATACAGTCTGAATTACTTGCC 1610
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 CCATATTGGTCTGTTGCATCCGTTGTTGAAAAACAGAGTCAAATTAATCCATTGTATGCT 1670
consensus_9561#1 ------------------------------------------------------------
consensus_9561#0 TTCCTATCTTCCATCAGTT 1689
consensus_9561#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||