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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1222 fasta sequence
[TTAGCAAAGGGAAATGATGAGACGGCGGGATACATGGACTTAAGCAGCACTATATCCAAATATAGTTTAACCATATATAGAGAAACATTGAAACTACTGACTTTTGTTAATTTCGAATGACAATAAAGCTGTTTTTATAAATAATACTTCCTAGTTATAGTCATACAATAATTAATTTCTAACGGGAGAAAAGCTGTGTGCCTGAACGATGATGAGAAATAAAGTGTGATTCTTTTAGAACAACAAATGAAGAATGAATTCAAATCATACAACAGATTTGTGAAGAGAAGAGTCAAAATGTTTTGAAACTGACTTGTGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAGCTTGAACTAAGCGTTCTTCTTCAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGATCTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAGATCTGTGCTTTTCAGGAACATTTCTGGCATAACAAATGATAACAGAGACACAAGCTCCAACAAGTTGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAACTCTAAAATTCATCAGATTTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAATGGAAGTTGATGCGTTTCATTAAAGCTCTGTCTTCAATAG-CACTTGTACCAACAGCATAGCTAGTTAATAGTATATTAAAATCCGGCTGAGACTCAGATTCGTAAATTTTCAATCGGATTGCCTTTCGCTGTTCTGCAGATCCTTGATAAACAAGTACTTTTAAGTGAGGACACCAAAGACTTAATTCACGCTGCCAATTATCCTGGGTTGAACTTGGACAAATGATAAGATGTGGTCCGCGATTCCCACTTTCCCAAAGGCTAGCTAAGAAAGCAATAGCTTGAACTGTTTTTCCGA-GGC-CCATTTCAT-CTGCTAGTATTCCATTGACTTGTTCGTGGTGTAGTAGACGAAGCCAGTTCAAACCAACAAGTTGGTAGGGTTTTAATTCACGCAAAGGGTTTAAAATAGCGGGCTGTTGAGTCACTAGTTGGACGGGATTACCATTTGTTTTGTTTATGCTGAAGTCATCATGTTCATGATCAACTCCATCAGATTGATTNTGATCAGTGATAGCATTCGCAGGTAAATCTATAGTATTTTCAAGCAAACGTGTCGCGTGACT]
[+] EMBL CD139248 [ TAGCAAAGGGAAATGATGAGACGGCGGGATACATGGACTTAAGCAGCACTATATCCAAATATAGTTTAACCATATATAGAGAAACATTGAAACTACTGACTTTTGTTAATTTCGAATGACAATAAAGCTGTTTTTATAAATAATACTTCCTAGTTATAGTCATACAATAATTAATTTCTAACGGGAGAAAAGCTGTGTGCCTGAACGATGATGAGAAATAAAGTGTGATTCTTTTAGAACAACAAATGAAGAATGAATTCAAATCATACAACAGATTTGTGAAGAGAAGAGTCAAAATGTTTTGAAACTGACTTGTGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAGCTTGAACTAAGCGTTCTTCTTCAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGATCTTCCTCACGGGAATTCATGGGTTTctt ]
[+] EMBL CD139283 [taAGCAAAGGGAAATGATGAGACGGCGGGATACATGGACTTAAGCAACACTATATTCAAATATAGTTTAACCATATATAGAGAAACATTGAAACTACTGACTTTTGTTAATTTCGAATGACAATAAAGCTGTTTTTATAAATAATACTTCCTAGTTATAGTCATACAATAATTAATTTCTAACGGGAGAAAAGCTGTGTGCCTGAACGATGATGAGAAATAAAGTGTGATTCTTTTAGAACAACAAATGAAGAATGAATTCAAATCATACAACAGATTTGTGAAGAGAAGAGTCCAAATGTTTTGAAACTGACTTGTGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAGCTTGAACT AGCGTTCTTCTTCAAAACTGCTTCGAATGGGACT ]
[-] EMBL CD169337 [ ACTAAGCGTTCTTCTTCAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGATCTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAGATCTGTGCTTTTCAGGAACATTTCTGGCATAACAAATGATAACAGAGACACAAGCTCCAACAAGTTGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAACTCTAAAATTCATCAGATTTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAATGGAAGTTGATGCGTTTCATTAAAGCTCTGTCTTCAATAG CACTTGTACCAACAGCATAGCTAGTTAATAGTATATTAAAATCCGGCTGAGACTCAGATTCGTAAATTTTCAATCGGATTGCCTT ]
[-] EMBL CD084512 [ GCTTCGAATGGGACTGTTATTGGCTGACTGATCTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAGATCTGTGCTTTTCAGGAACATTTCTGGCATAACAAATGATAACAGAGACACAAGCTCCAACAAGTTGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAACTCTAAAATTCATCAGATTTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAATGGAAGTTGATGCGTTTCATTAAAGCTCTGTCTTCAATAG CACTTGTACCAACAGCATAGCTAGTTAATAGTATATTAAAATCCGGCTGAGACTCAGATTCGTAAATTTTCAATCGGATTGCCTTTCGCTGTTCTGCAGATCCTTGATAAACAAGTACTTTTAAGTGAGGACACCAAAGACTTAATTCACGCTGCCAATTATCCTGGGTTGAACTTGGACAAATGATAAGATGTGGTCCGCGATTCCCACTTTCCCAAAGGCTAGCTAAGAAAGCAATAGCTTGAACTGTTTTTCCGA GGC CCATTTCAT CTGC ]
[-] EMBL CD084547 [ agCAGAGACGCAAGCTCCACCAAGTTGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAGCTCTAAAATTCATCAGATTTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAATGGAAGTTGATGCGTTTCATTAAAGCTCTGTCTTCAATAG CACTTGTACCAACAGCATAGCTAGTTAATAGTATATTAAAATCCGGCTGAGACTCAGATTCGTAAATTTTCAATCGGATTGCCTTTCGCTGTTCTGCAGATCCTTGATAAACAAGTACTTTTAAGTGAGGACACCAAAGACTTAATTCACGCTGCCAATTATCCTGGGTTGAACTTGGACAAATGATAAGATGTGGTCCGCGATTCCCACTTTCCCAAAGGCTAGCTAAGAAAGCAATAGCTTGAACTGTTTTTCCGAGGGCGCCATTTCATGCTGC ]
[+] EMBL CD154047 [ TATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAATGGAAGTTGATGCGTTTCATTAAAGCTCTGTCTTCAATAG CACTTGTACCAACAGCATAGCTAGTTAATAGTATATTAAAATCCGGCTGAGACTCAGATTCGTAAATTTTCAATCGGATTGCCTTTCGCTGTTCTGCAGATCCTTGATAAACAAGTACTTTTAAGTGAGGACACCAAAGACTTAATTCACGCTGCCAATTATCCTGGGTTGAACTTGGACAAATGATAAGATGTGGTCCGCGATTCCCACTTTCCCAAAGGCTAGCTAAGAAAGCAATAGCTTGAACTGTTTTTCCGA GGC CCATTTCAT CTGCTAGTATTCCATTGACTTGTTCGTGGTGTAGTAGACGAAGCCAGTTCAAACCAACAAGTTGGTAGGGTTTTAATTCACGCAAAGGGTTTAAAATAGCGGGCTGTTGAGTCACTAGTTGGACGGGATTACCATTTGTTTTGTTTATGCTGAAGTCATCATGTTCATGATCAACTCCATCAGATTGATTNTGATCAGTGATAGCATTCGCAGGTAAATCTATAGTATTTTCAAGCAAACGTGTCGCGTGACT]
[-] EMBL CD084519 [ TTTCATTAAAGCTCTGTCTTCAA AGACCCTTGTACCAACAGCATAGCTAGTTAATAGTATAATAAAATCCGGCTGAGACTCAGATTCGTAAATTTTCAATCGGATTGCCTTTCGCTGTTCTGCAGATCCTTGATAAACAAGTACTTTTAAGTGAGGACACCAAAGACTTAATTCACGCTGCCAATTATCCTGGGTTGAACTTGGACAAATGATAAGATGTGGTCCGCGATTCCCACTTTCCCAAAGGCTAGCTAAGAAAGCAATAGCTTGAACTGTTTTTCCGA GGC CCATTTCAT CTGC ]
[-] EMBL CD084516 [ cAATGATAAGATGTGGTCCGCGATTCCCACTTTCCCAAAGGCTAGCTAAGAAAGCAATAGCTTGAGCTGTTTTTCCGA GGC CCATTTCAT CTGC ]
consensusID : consensus_9562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 470 fasta sequence
[ACGATCTCTGACAGCGTACCCGTTTAACAAGATCGTGGTAGAGAGGCGCTTGTGTCTGCGACATCGCTACTAATACCACTATACTGGTTTTTGGAGGACGC-GTGCCAAGCACTTGAGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAGCTTGAACTAAGCGTTCTTCTTAAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGATCTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAAATCTGTGCTTTTAAGGAACATTTCTGGCTTAACAAATGATAACAGAGACACAAGCTCCAACAAGTTGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAACTCTAAAATTCATCAGATTTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAATGGAAGTTGATG]
[+] EMBL CD145687 [ACGATCTCTGACAGCGTACCCGTTTAACAAGATCGTGGTAGAGAGGCGCTTGTGTCTGCGACATCGCTACTAATACCACTATACTGGTTTTTGGAGGACGC GTGCCAAGCACTTGAGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAGCTTGAACTAAGCGTTCTTCTTAAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGATCTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAAATCTGTGCTTTTAAGGAACATTTCTGGCTTAACAAATGATAA ]
[-] EMBL CD121344 [ ATTGCTACTAAAACCACTTCACTGGTTTTTGGAGGAAGCTGT CCAAGGACTTGTGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAGCTTGAACTAAGCGTTCTTCTTCAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGATCTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAGATCTGTGCTTTTCAGGAACATTTCTGGCATAACAAATGATAACAGAGACACAAGCTCCAACAAGTTGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAACTCTAAAATTCATCAGATTTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAATGGAAGTTGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9562#0 TTAGCAAAGGGAAATGATGAGACGGCGGGATACATGGACTTAAGCAGCACTATATCCAAA 60
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TATAGTTTAACCATATATAGAGAAACATTGAAACTACTGACTTTTGTTAATTTCGAATGA 120
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CAATAAAGCTGTTTTTATAAATAATACTTCCTAGTTATAGTCATACAATAATTAATTTCT 180
consensus_9562#1 ---------------------------------------------------ACGATCTCT 9
** ***
consensus_9562#0 AACGGGAGAAAAGCTGTGTGCCTGAACGATGATGAGAAATAAAGTGTGATTCTTTTAGAA 240
consensus_9562#1 GAC---AGCGTACCCGTTTAACAAGATCGTGGTAGAGAGGCGCTTGTGTCTGCGACATCG 66
** ** * * ** * * * ** * * **** * *
consensus_9562#0 CAACAAATGAAGAATGAATTCAAATCATACAACAGATTTGTGAAGAGAAGAGTCAAAATG 300
consensus_9562#1 CTACTAAT---------------ACCACTATACTGGTTTTTGGAGGACGCGTGCCAAGC- 110
* ** *** * ** ** * *** ** ** * **
consensus_9562#0 TTTTGAAACTGACTTGTGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAG 360
consensus_9562#1 -----------ACTTGAGATTTTAACCGTCGTAAACAAAATGGTTGAAGTAGACTTTTAG 159
***** *******************************************
consensus_9562#0 CTTGAACTAAGCGTTCTTCTTCAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGAT 420
consensus_9562#1 CTTGAACTAAGCGTTCTTCTTAAAAACTGCTTCGAATGGGACTGTTATTGGCTGACTGAT 219
********************* **************************************
consensus_9562#0 CTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAGATCTG 480
consensus_9562#1 CTTCCTCACGGGAATTCATGGGTTTTGAGTAAATCTGAAAAATCCTTTTCAGCAAATCTG 279
****************************************************** *****
consensus_9562#0 TGCTTTTCAGGAACATTTCTGGCATAACAAATGATAACAGAGACACAAGCTCCAACAAGT 540
consensus_9562#1 TGCTTTTAAGGAACATTTCTGGCTTAACAAATGATAACAGAGACACAAGCTCCAACAAGT 339
******* *************** ************************************
consensus_9562#0 TGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAACTCTAAAATTCATCAGAT 600
consensus_9562#1 TGTTTTGAAGAGGTGTACCTGTAAGAAGTAAACGTCGTTGAACTCTAAAATTCATCAGAT 399
************************************************************
consensus_9562#0 TTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAAT 660
consensus_9562#1 TTCGATAACGTTGAGAAGTCATATTTTTTAGCATGTGTGCTTCATCGAAAATCCCATAAT 459
************************************************************
consensus_9562#0 GGAAGTTGATGCGTTTCATTAAAGCTCTGTCTTCAATAGCACTTGTACCAACAGCATAGC 720
consensus_9562#1 GGAAGTTGATG------------------------------------------------- 470
***********
consensus_9562#0 TAGTTAATAGTATATTAAAATCCGGCTGAGACTCAGATTCGTAAATTTTCAATCGGATTG 780
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CCTTTCGCTGTTCTGCAGATCCTTGATAAACAAGTACTTTTAAGTGAGGACACCAAAGAC 840
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TTAATTCACGCTGCCAATTATCCTGGGTTGAACTTGGACAAATGATAAGATGTGGTCCGC 900
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 GATTCCCACTTTCCCAAAGGCTAGCTAAGAAAGCAATAGCTTGAACTGTTTTTCCGAGGC 960
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CCATTTCATCTGCTAGTATTCCATTGACTTGTTCGTGGTGTAGTAGACGAAGCCAGTTCA 1020
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 AACCAACAAGTTGGTAGGGTTTTAATTCACGCAAAGGGTTTAAAATAGCGGGCTGTTGAG 1080
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TCACTAGTTGGACGGGATTACCATTTGTTTTGTTTATGCTGAAGTCATCATGTTCATGAT 1140
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CAACTCCATCAGATTGATTNTGATCAGTGATAGCATTCGCAGGTAAATCTATAGTATTTT 1200
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CAAGCAAACGTGTCGCGTGACT 1222
consensus_9562#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||