These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 846 fasta sequence [AGAATTTACTACATTTCATTTTATTTATAATTGTTGTGAACAGATAATGCAAATTATATACACAAAAATTGCATTTCGGTTGAATAAAATGAAAGACTAAGAATAATAAACGAAATTCAAATACAATGATCAATTCATAGGCAATAAACATTGGCAGACTTAAAAAAGGATGCATGAAACAAGAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAAAAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATACACAAAAAATGCCCTCGTGCCGATTCTTG] [+] EMBL CD076992 [AGAATTTACTACATTTCATTTTATTTATAATTGTTGTGAACAGATAATGCAAATTATATACACAAAAATTGCATTTCGGTTGAATAAAATGAAAGACTAAGAATAATAAACGAAATTCAAATACAATGATCAATTCATAGGCAATAAACATTGGCAGACTTAAAAAAGGATGCATGAAACAAGAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATAC ] [-] EMBL CD077360 [ TTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCATTAGAAAAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATACACAAAAAATGCCCTCGTGCCGATTCTTG] [+] EMBL CD139702 [ TATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAAAAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAGAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGA ] [+] EMBL CD139732 [ TATATATATATATTCGTAATAAGATGTTTACTGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAAAAAGAAAGAAAA ] consensusID : consensus_9563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 779 fasta sequence [TGTANTAATAATTAGCTNTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATTACACAAAAAATGCGGATATACATAATTTACAAAAACTGAGTAACAATTATACATATACATTAGCAGTGTTACTGATATACACAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATATGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAAAAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGACATAAATTAGTATTACATGGGAATTTAATGGCGCGAAATATATGTGTAAATAACAGGATACTGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAAAAAGGAAGATTGGATGCTAATTATCTAAATATTGAGCTTCTGTGTGCGTAGACCAGTTTTCAAAAAC] [-] EMBL CD076730 [TGTANTAATAATTAGCTNTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATTACACAAAAAATGCGGATATACATAATTTACAAAAACTGAGTAACAATTATACATATACATTAGCAGTGTTACTGATATACACAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATATGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAAAAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGACATAAATTAGTATTACATGGGAATTTAATGGCGCGAAATATATGTGTAAATAACAGGATACTGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAA ] [-] EMBL CD196056 [ ATTTACAAAANCTGAGTATCAATTATACATATACATTAGCAGTGTTACTGATATACACAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATATGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAAAAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGACATAAATTAGTATTACATGGGAATTTAATGGCGCGAA ] [-] EMBL CD195631 [ GGATACTGTGCCATTTCTTTGATGAAATCAGGAAATGGTAGGTAGGAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCTCCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAA ] [-] EMBL CD139648 [ TGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAA ] [+] EMBL CD066734 [ ATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAAAAAGGAAGATTGGATGCTAATTATCTAAATATTGAGCTTCTGTGTGCGTAGACCAGTTTTCAAAAAC] consensusID : consensus_9563#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [GTATTGGCTTTATATGCCTAACTATCTCTTTGATGTTAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACA] [+] EMBL CD083157 [GTATTGGCTTTATATGCCTAACTATCTCTTTGATGTTAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9563#0 --AGAATTTACTACATTTCATTTTATTTATAATTGTTGTGAACAGATAATGCAAATTATA 58 consensus_9563#2 ------------------------------------------------------------ consensus_9563#1 TGTANTAATAATTAGCTNTGCTGTGTTGGAATTGTTCGTCAACATA-ATTCTTCATTTTG 59 consensus_9563#0 TACACAAAAATTGCATTTCGGTTGAATAAAATGAAAGACTAAGAATAATAAACGAAATTC 118 consensus_9563#2 ------------------------------------------------------------ consensus_9563#1 TACACAAAAACAAAAA--CGGTTGG-TAGTTTAATTATTTAAAGGTAGTCTAGAAAAG-- 114 consensus_9563#0 AAATACAATGATCAATTCATAGGCAATAAACATTGGCAG-ACTTAAAAAAGGATGCATGA 177 consensus_9563#2 -----------------------------GTATTGGCTTTATATGCCTAACTATCTCTTT 31 consensus_9563#1 AAGCATGATGA--GAATTAGAAAAAAAGAAATTACACAAAAAATGCGGATATACATAATT 172 * * * * * * consensus_9563#0 AACAAGAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATA-A 236 consensus_9563#2 GATGTTAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATA-A 90 consensus_9563#1 TACAAAAACTGA-GTAACAATTATACAT-----ATACATTAGCAGTGTTACTGATATACA 226 * ** * *** *** ** ** ** ***** * * * ***** * consensus_9563#0 CAATCAGAGTAAGGAATA-TAAACTTAAC-AATGTGCACATATTGACATTAAGAATCTCA 294 consensus_9563#2 CAATCAGAGTAAGGAATA-TAAACTTAAC-AATGTGCACATATTGACATTAAGAATCTCA 148 consensus_9563#1 CAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATA 286 *** *** * * ** * ** * ** **** * * * * * consensus_9563#0 TCCAA---GAACCAGTTTAACGAGTAGTGAGATCACTCTTT--ATGAGAAAGAAACGCCA 349 consensus_9563#2 TCCAA---GAACCAGTTTAACGAGTAGTGAGATCACTCTTT--ATGAGAAAGAAACGCCA 203 consensus_9563#1 TGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAA 346 * * * * * ** * ** * * * ** *** *** ** * ** ** * consensus_9563#0 CCGAGTAAAATAAATTGAATCAAATTTTA-ATTTATTTGATTATTAACTGGTTGAGAGAG 408 consensus_9563#2 CCGAGTAAAATAAATTGAATCAAATTTTA-ATTTATTTGATTATTAACTGGTTGAGAGAG 262 consensus_9563#1 --AAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGAC 404 ** * **** *** ** * * * *** ** ** * **** **** consensus_9563#0 CGAAAAAAATAG-ATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTA-AGTGGAT 466 consensus_9563#2 CGAAAAAAATAG-ATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTA-AGTGGAT 320 consensus_9563#1 ATAAATTAGTATTACATGGGAATTTAATGGCGCGAAATATATGTGTAAATAACAGGATAC 464 *** * ** * ** * * * * * * ** * * * ** * consensus_9563#0 TGGAACACACTCAAAATTTA--CAGGCATTGCTACGAAGGTAGAGTGATACTGACT---A 521 consensus_9563#2 TGGAACACACTCAAAATTTA--CAGGCATTGCTACGAAGGTAGAGTGATACTGACT---A 375 consensus_9563#1 TGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAA 524 ** ** ** * *** * ** ** * ** * * * * * consensus_9563#0 TGA-ATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACA 580 consensus_9563#2 TGA-ATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACA 434 consensus_9563#1 TGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACA 584 *** * ** * * * * ***** ** * * ** * ** * * *** consensus_9563#0 G-----CAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAA 635 consensus_9563#2 G-----CAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACA------------- 476 consensus_9563#1 GTCTGGCCATAAAAAGTGAATATTTAATATGT-ACAT-AAAGAAAAACCAAGAATGCACA 642 * * *** ** *** ** * ** **** * * * * * consensus_9563#0 AAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTG 695 consensus_9563#2 ------------------------------------------------------------ consensus_9563#1 AGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGAT 702 consensus_9563#0 TGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGT 755 consensus_9563#2 ------------------------------------------------------------ consensus_9563#1 TATTAAGAAAAAAGGAAGATTGGATGCTA-ATTATCTAAATATTGAGCTTCTGTGTGCGT 761 consensus_9563#0 AGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAA 815 consensus_9563#2 ------------------------------------------------------------ consensus_9563#1 AGACCAGTTTTCAAAAAC------------------------------------------ 779 consensus_9563#0 TACACAAAAAATGCCCTCGTGCCGATTCTTG 846 consensus_9563#2 ------------------------------- consensus_9563#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||