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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 917 fasta sequence
[GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCATAACATTTACGATATTATT-AAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATAT-TACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTCA]
[+] EMBL CD123490 [GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCATAACATTTACGATATTATT AAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATATNTACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGA ]
[+] EMBL CD184835 [ GAAAAGTTCATAACATTTACGATATTATTAAAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCCAATCATTTAGAACGATTAATAT TACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAA ]
[+] EMBL CD073341 [ GGTTTTTATTTATAAAAAAAATTCAAATCATTTAAAACGATTAATAT TACCGGGATGAAAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTNTGTAATTCTTGTGTGAACAATTCAAGGAATA ]
[+] EMBL CD091422 [ GATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGTAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGGTGCGT ]
[-] EMBL CD078881 [ TCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTCA]
[-] EMBL CD192091 [ TACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGT ]
[+] EMBL CD178854 [ CAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTC ]
consensusID : consensus_9565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 419 fasta sequence
[TGAACAAAGAAATGAATCCAAGTGGAATATACTAGGTGGTATGCTGCCATTCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGTATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA]
[+] EMBL CD097798 [TGAACAAAGAAATGAATCCAAGTGGAATATACTAGGTGGTATGCTGCCATTCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGTATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACAT AAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCA ]
[+] EMBL CD091418 [ TCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA]
[+] EMBL CD191800 [ ACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTTTCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9565#0 GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCAT 60
consensus_9565#1 ------------------------------------------------------------
consensus_9565#0 AACATTTACGATATTATTAAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGC 120
consensus_9565#1 ------------------------------------------------------------
consensus_9565#0 AGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTT 180
consensus_9565#1 ------------------------------------------------------------
consensus_9565#0 AAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTC 240
consensus_9565#1 TGAACAAAGAAATGAATCCAAGTGGAATAT--------ACTA-GGTGGTATGCTGCCAT- 50
** ** **** ** ** ** **** *** * *** * *
consensus_9565#0 ATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATT 300
consensus_9565#1 -TCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGT 109
**** ** ** * * ** *** ******* * * * * *
consensus_9565#0 TTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATATT 360
consensus_9565#1 ATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGAT 169
*** ** * * * * ** ** * * *** * ** * * ** * *
consensus_9565#0 ACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAA-GGAAGTCCCAAAATT 419
consensus_9565#1 ATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTT 229
* * * ** * * ** * * * ** ** * * ** **
consensus_9565#0 ATACAACGATAC-TATCTAAAAACAAT--AGAAATTATA-GTTACATAGTGAATAAATTC 475
consensus_9565#1 TCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATT 289
* ** * * * ** ** * *** ***** * * * * ** *** ** *
consensus_9565#0 TTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAAC 535
consensus_9565#1 CC------AATTGTTATTCCAGATCCTTTAGGT---TTTATCA----GCAATAAATACAG 336
** * * * ** * * * * *** * * * *** *
consensus_9565#0 ATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAG 595
consensus_9565#1 TTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATC---AATGTTTAAC 393
*** * * ****** **** * *** ***** ** * *** **
consensus_9565#0 GGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCT 655
consensus_9565#1 AGAGACAATACGAGTAATC-GTAGAAA--------------------------------- 419
** *** * * ** * ** **
consensus_9565#0 CGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAAT 715
consensus_9565#1 ------------------------------------------------------------
consensus_9565#0 ACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATC 775
consensus_9565#1 ------------------------------------------------------------
consensus_9565#0 ATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCA 835
consensus_9565#1 ------------------------------------------------------------
consensus_9565#0 GTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAAC 895
consensus_9565#1 ------------------------------------------------------------
consensus_9565#0 AATTCAAGGAATAAACAATTCA 917
consensus_9565#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||