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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1818 fasta sequence
[ATCTTTACAGCTAGGTTTCTCCCTTTTTCCTGTGGAAGCGAAATAGTTGTTGGCTTTAAATGCGGTTGTGTTACCCATGTTAATCCTAATTCTAGTATAAAGGATAGTCTCAAGAACATTTTCTGTCACGCCTTTGCTGTGTATGACATTCTTACTTTGCAAGAAATGCCTACCTGCTTTATAACACTATCTCATGACCATTCAGCGACTCTTCTGGATACCAGAGCCACTTCCGTCGTGCACAAGAGTTCGAGTTGTAGTCGAGGATGTTTCAACAACACAAACTCACCATGGGTTTCAAATTTTTCTGTTGTCAATCAGTTAAAGTTTCATTTTCCAGTAACTGCTGGTGATATCCATCCTTTGAATGGATGTCGTTCAATTGCGCTGGCGACAGCCGACGGTTTTGTACGTCTTTTTGATATTCGGAAGCTCGTTTCCACTTTGTCCTCCTCTGCAGCTGTGGGCGACCCACCCCAACCAACTCCATTTCGTGTAGCTAGACCTCTTGGTTTACCCGCGAAGATAAATTCGAACAAAACATTCAGACTAGATTATGGACCAGGTCATATAACGTCCGTCAAGTTTGAACCTATCTATGACAAGGATCATACTCAGTTTTTGTTACCTACTGGCCGTAAACAGTTACCTTCGTCGGATCTTGGTGGGAAACATTTACTTGTCAGTCATATGTATGCCCCCGTTTTCTTGTATGATCTTTATTCAGAAGAAGCTNTCAGCGACTCTGGAGTACAGCGGCCTGATTGGCTACCGAATACGGATACATGCAGTCCATCATCTGAAACAGAATCTCCTCGCTCATCAGAAGATAGCCTTATTTCAGATCCAAATATACGTTTAACTGTTGCTCTCTATCGATGGCTCACTCAGCATCGATCCAGAACAAATGAAAGTGCTGTGGATGAAGCGTCAACTGAATCTCAAACAACATCTTCAAGTCCTGCCGAATCAACAACTAGTCAAACTTCTTACACAGGCTCTCAGCGTGAACAGAAACTCCCTATCGATTACTTAACAGATGCATATATTTCTGACGTCATTAATTCTTCTCCAAGGTGTCGCGAAATAATGAAGTATTGTGGTCGTGAATGCTGTAGTACTGTGGTCAAAGTTTCAACATTTTGGGGGCGGAACTTTATCCTGTCCGGATCTGAATGTGGTCATTTAATTGCATGGGATCGTAATACAGGAAAGCCTGCACTTGCTATTANAGCAGATACATCTGTAGTAAATCGAATTATTCCTCATCCTCGTTTTCCAATGATTGCTGTCAGCGGAATTGATCGGTCCATAAAAATAATTGAGCCTGATCCAAATGTATACGAACAAAGCGAAGTTGATGATGGTGATGACCATGGAAAATCAGCATTTATGAAAGTAGTANAACAGCATGAAGAAGAAGCCAGTCAGTTATGTCAAACAAATGATATCAGAACGAAAAAAATATTAAGTTCTGGGAACAATCACTTGGATAGTATCGCACGTCTACGAGCTGGCCGTGTTGCACGAATGATCTTACTACGGCTCGTTGAAGGGACAAACTCCACAGATTCAGGATATACGGATCCCAACCCCTGGAAGCTCATCCGGGCTGGGACTTTAATAAATCCTGGAACCCTCGGGCCTTTCACCCGGATTTTCCCTCATTTATCCATAATTCCGAATTTCAAATTCTTTTTCTTTCCCGAAACGTGCGGAGAAAAGCCTTTTACCCCTTCTTTTAAAATTTCCCCACAACAAAAACTTGGTTGATTAATATTTCCTCAAAAAATCTCTTTGTGCCTAAAAGGCGCTGTG]
[+] EMBL CD160362 [ATCTTTACAGCTAGGTTTCTCCCTTTTTCCTGTGGAAGCGAAATAGTTGTTGGCTTTAAATGCGGTTGTGTTACCCATGTTAATCCTAATTCTAGTATAAAGGATAGTCTCAAGAACATTTTCTGTCACGCCTTTGCTGTGTATGACATTCTTACTTTGCAAGAAATGCCTACCTGCTTTATAACACTATCTCATAACCATTCAGCGACTCCTCTGGATACCAGAGCCACTTCCGTCGTGCACAAGAGTTCGAGTTGTAGTCGAGGATGTTTCAACAACACAAACTCACCATGGGTTTCAAATTTTTCTGTTGTCAATCAGTTAAAGTTTCATTTTCCAGTAACTGCTGGTGATATCCATCCTTTGAATGGATGTCGTTCAATTGCGCTGGCGACAGCCGACGGTTTT ]
[+] EMBL CD160304 [ATCTTTACAGCTAGGTTTCTCCCTTTTTCCTGTGGAAGCGAAATAGTTGTTGGCTTTAAATGCGGTTGTGTTACCCATGTTAATCCTAATTCTAGTATAAAGGATAGTCTCAAGAACATTTTCTGTCACGCCTTTGCTGTGTATGACATTCTTACTTTGCAAGAAATGCCTACCTGCTTTATAACACTATCTCATGACCATTCAGCGACTCTTCTGGATACCAGAGCCACTTCCGTCGTGCACAAGAGTTCGAGTTGTAGTCGAGGATGTCTCAACAACACAAACTCACCATGGGTTTCAAATTTTTCTGTTGTCAATCAGTTAAAGTTTCATTTTCCAGTAACTGCTGGTGATATCCATCCTTTGAATGGATGTCGTTCAATTGCGCTG ]
[+] EMBL CD160100 [ATCTTTACAGCTAGGTTTCTCCCTTTTTCCTGTGGAAGCGAAATAGTTGTTGGCTTTAAATGCGGTTGTGTTACCCATGTTAATCCTAATTCTAGTATAAAGGATAGTCTCAAGAACATTTTCTGTCACGCCTTTGCTGTGTATGACATTCTTACTTTGCAAGAAATGCCTACCTGCTTTATAACACTATCTCATGACCATTCAGCGACTCTTCTGGATACCAGAGCCACTTCCGTCGTGCACAAGAGTTCGAGTTGTAGTCGAGGATGTTTCAACAACACAAACTCACCATGGGTTTCAAATTTTTCTGTTGTCAATCAGTTAAAGTTTCATTTTCCAGTAACTGCTGGTGATATCCATCCTTTGAATGGATGTCGTTCAATTGCGCTGGCGACAGCCGACG ]
[+] EMBL BG931562 [ GTCTCAAGAACATTTTCTGTCACGCCTTTGCTGTGTATGACATTCTTACTTTGCAAGAAATGCCTACCTGCTTTATAACACTATCTCATGACCATTCAGCGACTCTTCTGGATACCAGAGCCACTTCCGTCGTGCACAAGAGTTCGAGTTGTAGTCGAGGATGTTTCAACAACACAAACTCACCATGGGTTTCAAATTTTTCTGTTGTCAATCAGTTAAAGTTTCATTTTCCAGTAACTGCTGGTGATATCCATCCTTTGAATGGATATCGTTCAATTGCGCTGGCGACAGCCGACGGTTTTGTACGTCTTTTTG ]
[+] EMBL CD185651 [ GTTCGAGTTGTAGTCGAGGATGTTTCAACAACACAAACTCACCATGGGTTTCAAATTTTTCTGTTGTCAATCAGTTAAAGTTTCATTTTCCAGTAACTGCTGGTGATATCCATCCTTTGAATGGATGTCGTTCAATTGCGCTGGCGACTGCCGACGGTTTTGTACGTCTTTTTGATATTCGGAAGCTCGTTTCCACTTTGTCCTCCTCTGCAGCTGTGGGCGACCCACCCCAACCAACTCCATTTCGTGTAGCTAGACCTCTTGGTTTACCCGCGAAGATAAATTCGAACAAAACATTCAGACTAGATTATGGACCAGGTCATATAACGTCCGTCAAGTTTGAACCTATCTATGACAAGGATCATACTCAGTTTTTGTTACCTACTGGCCGTAAACAGTTACCTTCGTCGGATCTTGGTGGGAAACATTTACTTGTCAGTCATATGTATGCCCCCGTTTTCTTGTATGATCTTTATTCAGAAGAAGCTNTCAGCGACTCTGGAGTACAGCGGCCTGATTGGCTACCGAATACGGATACATGCAGTCC ]
[+] EMBL CD079077 [ ATCTTGGTGGGAAACATTTACTTGTCAGTCATATGTATGCCCCCGTTTTCTTGTATGATCTTTATTCAGAAGAAGCTTTCAGCGACTCTGAAGTACAGCGGCCTGATTGGCTACCGAATACGGATACATGCAGTCCATCATCTGAAACAGAATCTCCTCGCTCATCAGAAGATAGCCTTATTTCAGATCCAAATATACGTTTAACTGTTGCTCTCTATCGATGGCTCACTCAGCATCGATCCAGAACAAATGAAAGTGCTGTGGATGAAGCGTCAACTGAATCTCAAACAACATCTTCAAGTCCTGCCGAATCAACAACTAGTCAAACTTCTTACACAGGCTCTCAGCGTGAACAGAAACTCCCTATCGATTACTTAACAGATGCATATATTTCTGACGTCATTAATTCTTCTCCAAGGTGTCGCGAAATAATGAAGTATTGTGGTCGTGAATGCTGTAGTACTGTGGTCAAAGTTTCAACATTTTGGGGGCGGAACTTTATCCTGTCCGGATCTGAATGTGGTCATTTAATTGCATGGGATCGTAATACAGGAAAGCCTGCACTTGCTATTANAGCAGATACATCTGTAGTAAATCGAATTATTCCTCATCCTCGTTTTCC ]
[+] EMBL CD079366 [ TTAACTGTTGCTCTCTATCGATGGCTCACTCAGCATCGATCCAGAACAAATGAAAGTGCTGTGGATGAAGCGTCAACTGAATCTCAAACAACATCTTCAAGTCCTGCCGAATCAACAACTAGTCAAACTTCTTACACAGGCTCTCAGCGTGAACAGAAACTCCCTATCGATTACTTAACAGATGCATATATTTCTGACGTCATTAATTCTTCTCCAAGGTGTCGCGAAATAATGAAGTATTGTGGTCGTGAATGCTGTAGTACTGTGGTCAAAGTTTCAACATTTTGGGGGCGGAACTTTATCCTGTCCGGATCTGAATGTGGTCATTTAATTGCATGGGATCGTAATACAGGAAAGCCTGCACTTGCTATTAAAGCAGATACATCTGTAGTAAATCGAATTATTCCTCATCCTCGTTTTCCAATGATTGCTGTCAGCGGAATTGATCGGTCCATAAAAATAATTGAGCCTGATCCAAATGTATACGAACAAAGCGAAGTTGATGATGGTGATGACCATGGAAAATCAGCATTTATGAAAGTAGTANAACAGCATGAAGAAGAAGCCAGTCAGTTATGTCAAACAAATGATATCAGAACGAAAAAAATATTAAGTTCTGGGAACAATCACTTGGATAGTATCGCACGTCTACGAGCTGGCCGTGTTGCACGAATGATCTTACTACGGCTCGTTGAAGGGACAAACTCCACAGATTCAGGATATACGGATCCCAACCCCTGGAAGCTCATCCGGGCTGGGACTTTAATAAATCCTGGAACCCTCGGGCCTTTCACCCGGATTTTCCCTCATTTATCCATAATTCCGAATTTCAAATTCTTTTTCTTTCCCGAAACGTGCGGAGAAAAGCCTTTTACCCCTTCTTTTAAAATTTCCCCACAACAAAAACTTGGTTGATTAATATTTCCTCAAAAAATCTCTTTGTGCCTAAAAGGCGCTGTG]
consensusID : consensus_9572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 642 fasta sequence
[CCTGTCCGGATCTGAATGTGGTCATTTAATTGCATGGGATCGTAATACAGGAAAGCCTGCACTTGCTATTAAAGCAGATACATCTGTAGTAAATCGAATTATTCCTCATCCTCGTTTTCCAATGATTGCTGTCAGCGGAATTGATCGGTCCATAAAAATAATTGAGCCTGATCCAAATGTATACGAACAAAGTGAAGTTGATGATGGTGATGACCATGGAAAATCAGCATTTATGAAAGTAGTAAAACAGCATGAAGAAGAAGCAAGTCAGTTATGTCAAACAAATGATATCAGAACGAAAAAAATATTAAGTTCTGGGAACAATCACTTGGATAGTATCGCACGTCTACGAGCTGGTCGTGTTGCACGAATGATCTTACTACGGCTCGTTGAAGGGACAAACTCCACAGATTCAAGATATACGGATACAAACACATGAAGCTCATCTGGCTGTGACTTTTATAATTCTTGATCTCTGTGCTTTCAACTGATTTTCACTATTTATCATTATTCGAATTCAAATTCATTTCTTTCCGAATCGTCTGTGACATGCTTTTATCCTCTCTCTAAATTTCCCCTAACACAAAACTTGTTAGTTAGTATTTCGTCAAATAATCATTTATGCCTATAAAAGCGACTGTA]
[-] EMBL CD073643 [CCTGTCCGGATCTGAATGTGGTCATTTAATTGCATGGGATCGTAATACAGGAAAGCCTGCACTTGCTATTAAAGCAGATACATCTGTAGTAAATCGAATTATTCCTCATCCTCGTTTTCCAATGATTGCTGTCAGCGGAATTGATCGGTCCATAAAAATAATTGAGCCTGATCCAAATGTATACGAACAAAGTGAAGTTGATGATGGTGATGACCATGGAAAATCAGCATTTATGAAAGTAGTAAAACAGCATGAAGAAGAAGCAAGTCAGTTATGTCAAACAAATGATATCAGAACGAAAAAAATATTAAGTTCTGGGAACAATCACTTGGATAGTATCGCACGTCTACGAGCTGGTCGTGTTGCACGAATGATCTTACTACGGCTCGTTGAAGGGACAAACTCCACAGATTCAAGATATACGGATACAAACACATGAAGCTCATCTGGCTGTGACTTTTATAATTCTTGATCTCTGTGCTTTCAACTGATTTTCACTATTTATCATTATTCGAATTCAAATTCATTTCTTTCCGAATCGTCTGTGACATGCTTTTATCCTCTCTCTAAATTTCCCCTAACACAAAACTTGTTAGTTAGTATTTCGTCAAATAATCATTTATGCCTATAAAAGCGACTGTA]
[-] EMBL CD167357 [ GATCTGAATGTGGTCATTTAATTGCATGGGATCGTAATACAGGAAAGCCTGCACTTGCTATTAAAGCAGATACATCTGTAGTAAATCGAATTATTCCTCATCCTCGTTTTCCAATGATTGCTGTCAGCGGAATTGATCGGTCCATAAAAATAATTGAGCCTGATCCAAATGTATACGAACAAAGTGAAGTTGATGATGGTGATGACCATGGAAAATCA ]
[-] EMBL CD073531 [ GTCCATAAAAATAATTGAGCCTGATCCAAATGTATACGAACAAAGTGAAGTTGATGATGGTGATGCCCATGGAAAATCAGCATTTATGAAAGTAGTAAAACAGCATGAAGAAGAAGCAAGTCAGTTATGTCAAACAAATGATATCAGAACGAAAAAAATATTAAGTTCTGGGAACAATCACTTGGATAGTATCGCACGTCTACGAGCTGGTCGTGTTGCACGAATGATCTTACTACGGCTCGTTGAAGGGACAAACTCCACAGATTCAAGATATACGGATACAAACACATGAAGCTCATCTGGCTGTGACTTTTATAATTCTTGATCTCTGTGCTTTCAACTGATTTTCACTATTAATAATTATTCGAATTCAAATTCATTTCTTTCCGAATCGTCTGTGACATGCTTTTATCCTCTCTATAAATTTCCCCTAACACAAAACTTGTTAGTTAGTATTTCGTCAAATAATCATTTATGCCTATAAAAGCGACTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9572#0 ATCTTTACAGCTAGGTTTCTCCCTTTTTCCTGTGGAAGCGAAATAGTTGTTGGCTTTAAA 60
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 TGCGGTTGTGTTACCCATGTTAATCCTAATTCTAGTATAAAGGATAGTCTCAAGAACATT 120
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 TTCTGTCACGCCTTTGCTGTGTATGACATTCTTACTTTGCAAGAAATGCCTACCTGCTTT 180
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 ATAACACTATCTCATGACCATTCAGCGACTCTTCTGGATACCAGAGCCACTTCCGTCGTG 240
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 CACAAGAGTTCGAGTTGTAGTCGAGGATGTTTCAACAACACAAACTCACCATGGGTTTCA 300
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 AATTTTTCTGTTGTCAATCAGTTAAAGTTTCATTTTCCAGTAACTGCTGGTGATATCCAT 360
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 CCTTTGAATGGATGTCGTTCAATTGCGCTGGCGACAGCCGACGGTTTTGTACGTCTTTTT 420
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 GATATTCGGAAGCTCGTTTCCACTTTGTCCTCCTCTGCAGCTGTGGGCGACCCACCCCAA 480
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 CCAACTCCATTTCGTGTAGCTAGACCTCTTGGTTTACCCGCGAAGATAAATTCGAACAAA 540
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 ACATTCAGACTAGATTATGGACCAGGTCATATAACGTCCGTCAAGTTTGAACCTATCTAT 600
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 GACAAGGATCATACTCAGTTTTTGTTACCTACTGGCCGTAAACAGTTACCTTCGTCGGAT 660
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 CTTGGTGGGAAACATTTACTTGTCAGTCATATGTATGCCCCCGTTTTCTTGTATGATCTT 720
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 TATTCAGAAGAAGCTNTCAGCGACTCTGGAGTACAGCGGCCTGATTGGCTACCGAATACG 780
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 GATACATGCAGTCCATCATCTGAAACAGAATCTCCTCGCTCATCAGAAGATAGCCTTATT 840
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 TCAGATCCAAATATACGTTTAACTGTTGCTCTCTATCGATGGCTCACTCAGCATCGATCC 900
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 AGAACAAATGAAAGTGCTGTGGATGAAGCGTCAACTGAATCTCAAACAACATCTTCAAGT 960
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 CCTGCCGAATCAACAACTAGTCAAACTTCTTACACAGGCTCTCAGCGTGAACAGAAACTC 1020
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 CCTATCGATTACTTAACAGATGCATATATTTCTGACGTCATTAATTCTTCTCCAAGGTGT 1080
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 CGCGAAATAATGAAGTATTGTGGTCGTGAATGCTGTAGTACTGTGGTCAAAGTTTCAACA 1140
consensus_9572#1 ------------------------------------------------------------
consensus_9572#0 TTTTGGGGGCGGAACTTTATCCTGTCCGGATCTGAATGTGGTCATTTAATTGCATGGGAT 1200
consensus_9572#1 --------------------CCTGTCCGGATCTGAATGTGGTCATTTAATTGCATGGGAT 40
****************************************
consensus_9572#0 CGTAATACAGGAAAGCCTGCACTTGCTATTANAGCAGATACATCTGTAGTAAATCGAATT 1260
consensus_9572#1 CGTAATACAGGAAAGCCTGCACTTGCTATTAAAGCAGATACATCTGTAGTAAATCGAATT 100
******************************* ****************************
consensus_9572#0 ATTCCTCATCCTCGTTTTCCAATGATTGCTGTCAGCGGAATTGATCGGTCCATAAAAATA 1320
consensus_9572#1 ATTCCTCATCCTCGTTTTCCAATGATTGCTGTCAGCGGAATTGATCGGTCCATAAAAATA 160
************************************************************
consensus_9572#0 ATTGAGCCTGATCCAAATGTATACGAACAAAGCGAAGTTGATGATGGTGATGACCATGGA 1380
consensus_9572#1 ATTGAGCCTGATCCAAATGTATACGAACAAAGTGAAGTTGATGATGGTGATGACCATGGA 220
******************************** ***************************
consensus_9572#0 AAATCAGCATTTATGAAAGTAGTANAACAGCATGAAGAAGAAGCCAGTCAGTTATGTCAA 1440
consensus_9572#1 AAATCAGCATTTATGAAAGTAGTAAAACAGCATGAAGAAGAAGCAAGTCAGTTATGTCAA 280
************************ ******************* ***************
consensus_9572#0 ACAAATGATATCAGAACGAAAAAAATATTAAGTTCTGGGAACAATCACTTGGATAGTATC 1500
consensus_9572#1 ACAAATGATATCAGAACGAAAAAAATATTAAGTTCTGGGAACAATCACTTGGATAGTATC 340
************************************************************
consensus_9572#0 GCACGTCTACGAGCTGGCCGTGTTGCACGAATGATCTTACTACGGCTCGTTGAAGGGACA 1560
consensus_9572#1 GCACGTCTACGAGCTGGTCGTGTTGCACGAATGATCTTACTACGGCTCGTTGAAGGGACA 400
***************** ******************************************
consensus_9572#0 AACTCCACAGATTCAGGATATACGGATCCCAACCCCTGGAAGCTCATCCGGGCTGGGACT 1620
consensus_9572#1 AACTCCACAGATTCAAGATATACGGATACAAACACATG-AAGCTCATCTGG-CTGTGACT 458
*************** *********** * *** * ** ********* ** *** ****
consensus_9572#0 TTAATAAATCCTGGAACCCTCGGGCCTTTCACCCGGATTTTCCCTCATTTATCCATAATT 1680
consensus_9572#1 TTTATAATTCTTGA---TCTCTGTGCTTTCAACTG-ATTTTCACT-ATTTATC-ATTATT 512
** **** ** ** *** * ****** * * ****** ** ******* ** ***
consensus_9572#0 CCGAATTTCAAATTCTTTTTCTTTCCCGAAACGTGCGGAGAAAAGCCTTTTACCCCTTCT 1740
consensus_9572#1 CGAA--TTCAAATTCATTTC--TTTCCGAATCGT-CTGTGACATGC-TTTTATCCTCTCT 566
* * ********* *** ** ***** *** * * ** * ** ***** ** ***
consensus_9572#0 TTTAAAATTTCCCCACAACAAAAACTTGGTTGATTAATATTTCCTCAAAAAATCTCTTTG 1800
consensus_9572#1 CT--AAATTTCCCC-TAACACAAAACTTGTTAGTTAGTATTTCGTCAAATAATCA-TTTA 622
* ********** **** *** * *** *** ****** ***** **** ***
consensus_9572#0 TGCCTA-AAAGGCG-CTGTG 1818
consensus_9572#1 TGCCTATAAAAGCGACTGTA 642
****** *** *** ****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||