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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1066 fasta sequence
[AAGTGCCGATAATATAGTGCTCTCAAATCAAAATGGCGCGCGTCGTTGCAGTATGGTAGGAAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCTCGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA-GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGA-TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA-GAAGATGGTTCCCGCATTGAACTTGCGTTCC-GAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTCTTCA-TTGTACAGTGTATATTACGTGTATTTAAAGTTACTTGTTTTATAATTAATTTATTGTAAAATTAAAAAAAAAAAA]
[+] EMBL CD142187 [AAGTGCCGATAATATAGTGCTCTCAAATCAAAATGGCGCGCGTCGTTGCAGTATGGTAGGAAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCTCGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTG AAATGTCAGT ]
[+] EMBL CD078667 [ CGCGTCGTTGCAGTATGGTAGGAAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCTCGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGATTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGA TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATT ]
[+] EMBL CD081289 [ CATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTGGAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTTCAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGATAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGA TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA GAAGATGGTTCCCGCATTGAACTTGCGTTCC GAAGACACATACACCGTGCAGATGTANGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGT ]
[+] EMBL CD190474 [ ATCTGTAGTGAAAATGTCAGTATACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTCTTTACAAGGTGAAATAGTGACACCAAAATGTACACAGCACCTTCTGTTTATTCGTCATGGCCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACA GGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAGGCAGAACCCTCAGA TGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA GAAGATGGTTCCCGCATTGAACTTGCGTTCC GAAGACACATACACCGTGCA ]
[-] EMBL CD075118 [ TGACAGGGGCTTGGGCGCCAGCAGTTGGACTGTACTGGANAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGATAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTCAGANTGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAA GAAGATGGTTCCCGCATTGAACTTGCGTTCC GAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTCTTCA TTGTACAGTGTATATTACGTGTATTTAAAGTTACTTGTTTTATAATTA ]
[-] EMBL AI395552 [ ATATAGAAGGAAGATGGTTCCCGCATTGAACTTGCGTTCCGGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTTTGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTGGGGACTTGCACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTATTGTAAAATTAAAAAAAAAAAA]
consensusID : consensus_9576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 581 fasta sequence
[TGACAGGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTC-AGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC---------AGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTC-TTCATTGTACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTCTTGTAAAATTAGATACTTTTTTCAAATTAAAAAAAAAAAAAAAAAA]
[-] EMBL CD073131 [TGACAGGGCTTGGGCGCCAGCAGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTC AGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC AGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTC TTCATTGTACAGTGTATATTACGTGTATTTAAAGTTACTTGTTTTATAATTAATTTCT ]
[-] EMBL CD190919 [ AGTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTATTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGTTCAAGCAGAACCCTC AGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATG ]
[-] EMBL AI395534 [ ggggTGTTGAATCAGNTGAGTT GTGTTAAATCACTTTCCCAATGTTCAAGCAGAA CCTCAAGATGTTATAGGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCTCGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGCGTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC AGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTTTTGGGACTTCTC TTCATTGTACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTCTTGTAAAATTAGATACTTTTTTCAAATTAAAAAAAAAAAAAAAAAA]
[-] EMBL AI394983 [ TGGTTCCCGCATTGAACTTGTGTTCGGAGGACACGTACCCCGTGCAGATGTAGGACAGGAAGTCGACACGTATGAAGTAGCTCTACAGTTTCCACCTGAAGCTTGGATAAGATTTTCCATCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGACGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTCCGTCCAGTAAATTTCTTGGGACTTCTCGTTCATTGTACAGTGTATATTACGTGTATTTAAAGTTTCTTGTTTTATAATTAATTTCTTGTAAAAaaaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9576#0 AAGTGCCGATAATATAGTGCTCTCAAATCAAAATGGCGCGCGTCGTTGCAGTATGGTAGG 60
consensus_9576#1 ------------------------------------------------------------
consensus_9576#0 AAATTAACACGACCGTAATAGATTGCATTTTAACATGTCATTCAGTCGTGTAGTACGTCT 120
consensus_9576#1 ------------------------------------------------------------
consensus_9576#0 CGGCTGTTGCATCACTGGTACAGCTTTATTCGGAGCCAAAGCGGCATGGTCTGCTGATTG 180
consensus_9576#1 ------------------------------------------------------------
consensus_9576#0 GAGTAGAGGTGATCAAAAGTTACCATTTTTTGACCAGTTGAAAAGTTTAGCGAACACCTT 240
consensus_9576#1 ------------------------------------------------------------
consensus_9576#0 CAATAAAATATTTCCATCAATACTAAGTGCTCGTGCTATCTGTAGTGAAAATGTCAGTAT 300
consensus_9576#1 ------------------------------------------------------------
consensus_9576#0 ACAACCATGGGACTGGGACTGGGATGGGAGAAATCCCTCTAATTTTCGGACAGATTCGTC 360
consensus_9576#1 ------------------------------------------------------------
consensus_9576#0 TTTACAAGGTGAAATAGTGACACCAAAATGTACACGGCACCTTCTGTTTATTCGTCATGG 420
consensus_9576#1 ------------------------------------------------------------
consensus_9576#0 CCAATATTATTATGCAAAAGAAGATTCTGACTGCCACTTGACAGGGCTTGGGCGCCAGCA 480
consensus_9576#1 --------------------------------------TGACAGGGCTTGGGCGCCAGCA 22
**********************
consensus_9576#0 GTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTA 540
consensus_9576#1 GTTGGACTGTACTGGAAAACGTTTACGAGAACTCAATTTTCCATATAGAAAATTATATTA 82
************************************************************
consensus_9576#0 TTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGT 600
consensus_9576#1 TTCGACAATGACACGTGCTGTTGAATCAGCTGAGTTGGTGTTAAATCACCTTCCCAATGT 142
************************************************************
consensus_9576#0 TCAAGCAGAACCCTCAGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCT 660
consensus_9576#1 TCAAGCAGAACCCTCAGATGCTATACGTGAGGGCGCTCCTTACATTCTGGAGCCACCCCT 202
************************************************************
consensus_9576#0 CGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGC 720
consensus_9576#1 CGCATATTACAAACCCACACCAAAAGATATAGAAGAAGATGGTTCCCGCATTGAACTTGC 262
************************************************************
consensus_9576#0 GTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACACGTATGAAGTGTT 780
consensus_9576#1 GTTCCGAAGACACATACACCGTGCAGATGTAGGACAGGAAGCCGACAC------------ 310
************************************************
consensus_9576#0 TGTGTGCCATGCAAATGTTATTCGCTATTTTGTTTGTAGAGCTCTACAGTTTCCACCTGA 840
consensus_9576#1 ---------------------------------------AGCTCTACAGTTTCCACCTGA 331
*********************
consensus_9576#0 AGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGA 900
consensus_9576#1 AGCTTGGATAAGATTTTCCCTCGATCACGGCAGTATAACATGGCTTGTCATCCGGCCTGA 391
************************************************************
consensus_9576#0 CGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTC 960
consensus_9576#1 CGGGCGTGTTACATTAAGATGGTTAGGAAACTCAGGACATATGCCCCCTGAACTTATTTC 451
************************************************************
consensus_9576#0 CGTCCAGTAAATTTTTTGGGACTTCTCTTCATTGTACAGTGTATATTACGTGTATTTAAA 1020
consensus_9576#1 CGTCCAGTAAATTTTTTGGGACTTCTCTTCATTGTACAGTGTATATTACGTGTATTTAAA 511
************************************************************
consensus_9576#0 GTTACTTGTTTTATAATTAATTTATTGTAAAATTAAA---------------AAAAAAAA 1065
consensus_9576#1 GTTTCTTGTTTTATAATTAATTTCTTGTAAAATTAGATACTTTTTTCAAATTAAAAAAAA 571
*** ******************* *********** * ********
consensus_9576#0 A--------- 1066
consensus_9576#1 AAAAAAAAAA 581
*
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||