These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1528 fasta sequence [TTAATTCTTAACTTTACCATTACTTTATTAGAAGAAATCACTAAACATAAGGGACCACCAGTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTAGTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATAATCGATACAAAGAA-GTTAAACGAACTGAGGGTATATCTACTACAGCTTTAGTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATCGCAGTTTAGTTCAAGTACAGAGTATTCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCATTTATCATTCCCTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCGTTTGAAAGTGGTAGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATGCCTCACAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATGTTACGCCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGTAAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAGTAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTAATGATCATACTCGAAATAAACGAAAGGA] [+] EMBL BG930730 [TTAATTCTTAACTTTACCATTACTTTATTAGAAGAAATCACTAAACATAAGGGACCACCAGTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTAGTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATTATCGATACAAAGAAGGTTAActa ] [-] EMBL CD197720 [ ACCACCAGTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTAGTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATAATCGATACAAAGAA GTTAAACGAACTGAGGGTATATCTACTACAGCTTTAGTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATCGCAGTTTAGTTCAAGTACAGAGTATTCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGAC ] [+] EMBL CD129980 [ TTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATAATCGATACAAAGAA GTTAAACGAACTGAGGGTATATCTACTACAGCTTTAGTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATC ] [-] EMBL CD059948 [ TCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCAT ] [-] EMBL CD060026 [ TCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCAT ] [-] EMBL CD118205 [ ggtagGATTCTATATAAAAAAGTAAAGATAAATTTATGCATCTTTGTAAGACGAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATCAAATTAATGTTCCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCATTTATCATTCCCTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCGTTTGAAAGTGGTAGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATGCCTCACAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATGTTACGCCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGT ] [+] EMBL CD117000 [ AATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAA ] [-] EMBL CD075638 [ GGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGTAAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAGTAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTAATGATCATACTCGAAATAAACGAAAGGA] [-] EMBL CD076999 [ CGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGTAAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAGTAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTAATGATCATACTGGAAATAAACGAAA ] consensusID : consensus_9578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence [CCTCCGGGCCAANAATTCGGCACGAGGGGTATATGTACCGGGTACATTTGACCTATTCCCATTGGTCATTTATCATTCCTTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCATTTGAAAGTGGTCGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATACCTCCCAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATCTTACACCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCANANNAATGANAAGAATGTGTCTTCTCTCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAANNAGACAGTGAACATGAGTATAATGGAATCTTACTGNATGAANTNATCTATGTATCGTACACATTCTCAANTCGTTTTATTANTAGAATTCAGTGATGTGAAAATGCATGACATGCTAANTATCAATAAANTGTGAATANNTATGACCTCCTCGANAAACGA] [+] EMBL CD082024 [CCTCCGGGCCAANAATTCGGCACGAGGGGTATATGTACCGGGTACATTTGACCTATTCCCATTGGTCATTTATCATTCCTTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCATTTGAAAGTGGTCGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATACCTCCCAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATCTTACACCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCANANNAATGANAAGAATGTGTCTTCTCTCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAANNAGACAGTGAACATGAGTATAATGGAATCTTACTGNATGAANTNATCTATGTATCGTACACATTCTCAANTCGTTTTATTANTAGAATTCAGTGATGTGAAAATGCATGACATGCTAANTATCAATAAANTGTGAATANNTATGACCTCCTCGANAAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9578#0 TTAATTCTTAACTTTACCATTACTTTATTAGAAGAAATCACTAAACATAAGGGACCACCA 60 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTA 120 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTC 180 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 TGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTT 240 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 AAAGCAAATAATCGATACAAAGAAGTTAAACGAACTGAGGGTATATCTACTACAGCTTTA 300 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATCGCAG 360 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 TTTAGTTCAAGTACAGAGTATTCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAA 420 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 AGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCC 480 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATT 540 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 TGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCT 600 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGAC 660 consensus_9578#1 -------CCTCCGGGCCAANAATTCGGCACGA-GGGGTATATGTACCGGGTACATTTGAC 52 * ** * * * ** * ************************* consensus_9578#0 CTATTCCACATTGGTCATTTATCATTCCCTGAGCAATGCTTAAAACTTGGGAATTATCTG 720 consensus_9578#1 CTATTCC-CATTGGTCATTTATCATTCCTTGAGCAATGCTTAAAACTTGGGAATTATCTG 111 ******* ******************** ******************************* consensus_9578#0 GTGGTTGGATTATACTCGGATAAAACATCGTCGTTTGAAAGTGGTAGAATGGGCTCAATC 780 consensus_9578#1 GTGGTTGGATTATACTCGGATAAAACATCGTCATTTGAAAGTGGTCGAATGGGCTCAATC 171 ******************************** ************ ************** consensus_9578#0 CTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATC 840 consensus_9578#1 CTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATC 231 ************************************************************ consensus_9578#0 ATTGATGCACCGTATGTAATGCCTCACAGTCTTTTGGATCATTTCAATGTAAATTATGTT 900 consensus_9578#1 ATTGATGCACCGTATGTAATACCTCCCAGTCTTTTGGATCATTTCAATGTAAATTATGTT 291 ******************** **** ********************************** consensus_9578#0 GCAATAGGTTGGGATAAAAATGTTACGCCAACATTAGAGGGCTTAGACCCGATGATGGTT 960 consensus_9578#1 GCAATAGGTTGGGATAAAAATCTTACACCAACATTAGAGGGCTTAGACCCGATGATGGTT 351 ********************* **** ********************************* consensus_9578#0 TGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTT 1020 consensus_9578#1 TGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTT 411 ************************************************************ consensus_9578#0 GTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTG 1080 consensus_9578#1 GTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTG 471 ************************************************************ consensus_9578#0 AGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTT 1140 consensus_9578#1 AGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTT 531 ************************************************************ consensus_9578#0 TATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAA 1200 consensus_9578#1 TATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCA- 590 *********************************************************** consensus_9578#0 CACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTT 1260 consensus_9578#1 CACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTT 650 ************************************************************ consensus_9578#0 AATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCT 1320 consensus_9578#1 AATTTGATCCANANNAA-TGANAAGAATGTGTCTTCTCTC-ATCTCTCATCCTGTCATCT 708 *********** * ** *** ****************** ******************* consensus_9578#0 CACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGT 1380 consensus_9578#1 CACTTTTACGTGAGAAANNA-GACAGTGAACATGAGTATAATGGAA-TCTTACTGN--AT 764 ***************** * ************************* ******** * consensus_9578#0 AAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAG 1440 consensus_9578#1 GAANTNATCTATGTATCG-TACA-CATTCTCAANTCGTTTT--ATTANT-AGAATT-CAG 818 ** * ************ **** ********* ******* **** * ****** *** consensus_9578#0 TAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTA 1500 consensus_9578#1 T-GATGTGAAAATGCA--TGACAT-GCTAANT--ATCA--ATAAANTGTGAATAN---NT 867 * ************** ****** ***** * **** **** ** *** consensus_9578#0 ATGATCATACTCGAAATAAACGAAAGGA 1528 consensus_9578#1 ATGACC-TCCTCGANA--AACGA----- 887 **** * * ***** * ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||