These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1253 fasta sequence [AAGCTGAAAGGACTGAAGTATTTTATTGTTGGTTCAGGTGCAATTGGATGCGAGCTGCTAAAAAACTTTTCGTTGATGGGCGTTGGTGCAGGGCCGTCTGGAAAAGTTGTTGTGACAGACATGGATCTCATCGAAAGATCAAACCTGAACAGACGGTTCCTCTGTCGTCCATGGGATACCCATAAAATGAAATCAGTCGTGGCATCGACTGCTGCTAAAGTGATAAATCCAGAGTTTAATATTGAAGCTCATGAGAATCGTGTCGGTCCGGAAACAGAGAAAATCTATGACGACGAATTCTTCGAAAAATTGGATGGAATTGCTAATGCGTTAGACAACGTCGAGGCCCGCACTTATGTTGATCGTCGTTGTGTGTATTATCGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGTACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT-TGACGACCGTGGTTGCTGGTGGTAT----TGTGC------GTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTCCTATGCGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAA] [+] EMBL CD095100 [AAGCTGAAAGGACTGAAGTATTTTATTGTTGGTTCAGGTGCAATTGGATGCGAGCTGCTAAAAAACTTTTCGTTGATGGGCGTTGGTGCAGGGCCGTCTGGAAAAGTTGTTGTGACAGACATGGATCTCATCGAAAGATCAAACCTGAACAGACGGTTCCTCTGTCGTCCATGGGATACCCATAAAATGAAATCAGTCGTGGCATCGACTGCTGCTAAAGTGATAAATCCAGAGTTTAATATTGAAGCTCATGAGAATCGTGTCGGTCCGGAAACAGAGAAAATCTATGACGACGAATTCTTCGAAAAATTGGATGGAATTGCTAATGCGTTAGACAACGTCGAGGCCCGCACTTATGTTGATCGTCGTTGTGTGTATTATCGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGTACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGT ] [-] EMBL CD162952 [ GTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCAGGAGTTCTGTCGTATGGTACAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGA ] [-] EMBL CD162828 [ GTTTGAGACGTGGAATGTTTGCACTATTACCATCGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGA ] [+] EMBL CD096211 [ TAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGAC ] [+] EMBL CD118309 [ AACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAAGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTGGGAAGTGTAGTCGGGAGTTCTGTCGAATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGT GTTCATG GTCTGTCGTATGTGG ] [-] EMBL CD119243 [ nTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGT TGACGACCGTGGTTGCTGGTGGTAT TGTGC GTTGTATTTGTAGTTGTTTGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTTCTATGCGTTTGTTTCAGGA ] [+] EMBL CD156905 [ TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGACCGTGGTTGCTGGTGGTATTGTGTGTGCGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTCCTATGCGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAA] [+] EMBL CD156965 [ TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGACCGTGGTTGCTGGTGGTATTGTGTGTGCGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTCCTATGCGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAATGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAA] consensusID : consensus_9580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence [TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTATTGTGTGTACGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGAGAGGAGTTGTGATTGACTTAGATGTAACATGTGTGTGTGTGTTGATGGTGATCCGGTGGGTGTGTTATTCTCGTTTGTGTGTGTAGCATTTTCATCATAACATTTGTATGTTTTCCTATCTATTTCA] [+] EMBL CD118798 [TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTATTGTGTGTACGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGAGAGGAGTTGTGATTGACTTAGATGTAACATGTGTGTGTGTGTTGATGGTGATCCGGTGGGTGTGTTATTCTCGTTTGTGTGTGTAGCATTTTCATCATAACATTTGTATGTTTTCCTATCTATTTCA] [+] EMBL CD118846 [TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTATTGTGTGTACGTGCGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAAGCAGNTCCTGCATCACAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9580#0 AAGCTGAAAGGACTGAAGTATTTTATTGTTGGTTCAGGTGCAATTGGATGCGAGCTGCTA 60 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 AAAAACTTTTCGTTGATGGGCGTTGGTGCAGGGCCGTCTGGAAAAGTTGTTGTGACAGAC 120 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 ATGGATCTCATCGAAAGATCAAACCTGAACAGACGGTTCCTCTGTCGTCCATGGGATACC 180 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 CATAAAATGAAATCAGTCGTGGCATCGACTGCTGCTAAAGTGATAAATCCAGAGTTTAAT 240 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 ATTGAAGCTCATGAGAATCGTGTCGGTCCGGAAACAGAGAAAATCTATGACGACGAATTC 300 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 TTCGAAAAATTGGATGGAATTGCTAATGCGTTAGACAACGTCGAGGCCCGCACTTATGTT 360 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 GATCGTCGTTGTGTGTATTATCGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGT 420 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 ACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTG 480 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 AGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAAT 540 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 CCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGG 600 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 TCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTA 660 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 GGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGT 720 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 GCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCG 780 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 TAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTG 840 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 ACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGG 900 consensus_9580#1 ------------------------------------------------------------ consensus_9580#0 AAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAA 960 consensus_9580#1 ---TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAA 57 ********************************************************* consensus_9580#0 CTGAAATGTCGCATGACAGATGTAAGTTACTGAGTTGACGACCGTGGTTGCTGGTGGTAT 1020 consensus_9580#1 CTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTAT 117 **************************** ****************************** consensus_9580#0 TGTGCGT----------TGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTT 1070 consensus_9580#1 TGTGTGTACGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTT 177 **** ** ******************************************* consensus_9580#0 GGATATTT-CGTTCCATCTTGTCCTATGCGTTTGTTT--------CAGGATGGTGTTTTG 1121 consensus_9580#1 GGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTG 237 *** **** * *** * ***** ** *********** *************** consensus_9580#0 ATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGT 1181 consensus_9580#1 ATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGT 297 ************************************************************ consensus_9580#0 CAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCT 1241 consensus_9580#1 CAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCT 357 ************************************************************ consensus_9580#0 CTTGTTGCGAAA------------------------------------------------ 1253 consensus_9580#1 CTTGTTGCGAAAGGTGAGAGGAGTTGTGATTGACTTAGATGTAACATGTGTGTGTGTGTT 417 ************ consensus_9580#0 ------------------------------------------------------------ consensus_9580#1 GATGGTGATCCGGTGGGTGTGTTATTCTCGTTTGTGTGTGTAGCATTTTCATCATAACAT 477 consensus_9580#0 ------------------------ consensus_9580#1 TTGTATGTTTTCCTATCTATTTCA 501 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||