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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1059 fasta sequence
[CTCCTAGAGGATACCATGCAATCATCGGGATCATGAGTAGATGGAGAGAGTGGAGAAAA-T-TGTGTTTGTTCTACCGAC-TAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTGCAGTTTTCACTCG-GGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG-TCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT-TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT-TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTTTCAAGTGGGCATCATGCCTTTCGGATGTGTGCAACGTGTTA-TTTTTAAGCTTTTTAAGGGGTACACTTGCCAAATGTAGGGCCTCGATTAATGAAGTTGCTGGTTTTATTTACGTCAAGACAATTTGATTGAGCAATGAATTTGTTGGCGAATACCGTATAAGTAGTTGTAGAAGTAATAAAAGAAGAAGGAGGGTGAGCGGGTGTTGATGTGAAAGTGAGAGAATGCAGGGTAAGTTTTTATTCGGTGGCGTGAATGGATGTGGCAAGAGATCAGTTATGGGCTTTGGTCTGTTGGATTTATGCCTGCCTAATGAAGCGTTTAGTGAATGTTTAATAAAGGGCATCTGANCAAGGCTGGTTAATAAGCCTAGTGCTTCAGTGATGCNCAAATGGACGTAG]
[+] EMBL CD061811 [CTCCTAGAGGATACCATGCAATCATCGGGATCATGAGTAGATGGAGAGAGTGGAGAAAAGTATGTGTTTGTTCTACCGAC TAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTGCAGTTTTCACTCGCGGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAGCTCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TCTATTTTGAGCCATGTTCAGTGACGTTTCACTG ]
[+] EMBL CD064234 [ GGAGAGAGTGGAGAAAA T TGTGTTTGTTCTACCGACATAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTGCAGTTTTCACTCG GGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG TCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTACAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGAGCCTTGTCGAGTTACGTTGTAGTCGTG ]
[+] EMBL CD139915 [ AATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG TCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTNTAAGAGACGGAAGTG ]
[-] EMBL CD061962 [ TAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG TCATATGATCGTTCATTTCTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTCTGCAGATTTGATTATGTGTCATTTATTTGTGACACGTAACGTGTCTTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCTCTTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCC TGTCGAGTTACGTTGTAGTCGT GTCGCGACCCGGAC ]
[+] EMBL CD155210 [ GATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTG ]
[+] EMBL CD158171 [ GCTAGGAAACACACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTTTCAAGTGGGCATCATGCCTTTCGGATGTGCGCAACGTGTTATTTTTTAAGCCTTTTAAGGGGTACACT ]
[+] EMBL CD092484 [ GCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATATGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGATAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTG ]
[+] EMBL CD158133 [ GCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGAGATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTTTCAAGTGNGCATCATGCCTTTCGGATGTGTGCAACGTGTTA TTTTTAAGCTTTTTA ]
[+] EMBL CD066142 [ TATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGCTGTCACCCATTTTGTGTTTCAAGTGGGCATCATGCCTTTCGGATGTGTGCAACGTGTTA TTTTTAAGCTTTTTAA GGGTACAACTGCCAAATGTAGGGCCTCGATTAATGAAGTTGCTGGTTTTATTTACGTCAAGACAATTTGATTGAGCAATGAATTTGTTGGCGAATACCGTATAAGTAGTTGTAGAAGTAATAAAAGAAGAAGGAGGGTGAGCGGGTGTTGATGTGAAAGTGAGAGAATGCAGGGTAAGTTTTTATTCGGTGGCGTGAATGGATGTGGCAAGAGATCAGTTATGGGCTTTGGTCTGTTGGATTTATGCCTGCCTAATGAAGCGTTTAGTGAATGTTTAATAAAGGGCATCTGANCAAGGCTGGTTAATAAGCCTAGTGCTTCAGTGATGCNCAAATGGACGTAG]
consensusID : consensus_9581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[GAGGGAAACAACCCACACCGCCAGCTAAGGTCCCCAAGACACAGTTAAGTGGGAAACGAGGTGGGAATGCATAGACAGCTATGAGGTTGGCTTACAAGCACTCACCCTTTAGAGAAAGCGTAATAGCTCACTAGTCTAGTCGTTCTGCGCGGAAGATGTAACGGTGCTCAAACTGTGCACCGAAACTGCTGATATCAAATGATATGGTCTGGGATCGTTCTGTTTGTCTGTTAAGGTGTCTTGTTGCAGATGCTGGACATATCATAATTGCCAATGCTGGCATGATTAACTATAAAGGGAGTGAACAGCTTCCTCACCGAGAGCGCAAGGTTTCCTACGCAACTATCATCGTCGTATGGTGACTCGGCCCCTAACGTTACGCAGAAATGCGTAACCTAATGGGAAACACGTCAATATTTCTGTA]
[+] EMBL CD087060 [GAGGGAAACAACCCACACCGCCAGCTAAGGTCCCCAAGACACAGTTAAGTGGGAAACGAGGTGGGAATGCATAGACAGCTATGAGGTTGGCTTACAAGCACTCACCCTTTAGAGAAAGCGTAATAGCTCACTAGTCTAGTCGTTCTGCGCGGAAGATGTAACGGTGCTCAAACTGTGCACCGAAACTGCTGATATCAAATGATATGGTCTGGGATCGTTCTGTTTGTCTGTTAAGGTGTCTTGTTGCAGATGCTGGACATATCATAATTGCCAATGCTGGCATGATTAACTATAAAGGGAGTGAACAGCTTCCTCACCGAGAGCGCAAGGTTTCCTACGCAACTATCATCGTCGTATGGTGACTCGGCCCCTAACGTTACGCAGAAATGCGTAACCTAATGGGAAACACGTCAATATTTCTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9581#0 CTCCTAGAGGATACCATGCAATCATCGGGATCATGAGTAGATGGAGAGAGTGGAGAAAAT 60
consensus_9581#1 -----GAGGGAAACAACCCA--CACCGCCAGCTAAGGT---CCCCAAGACACAGTTAAGT 50
*** ** * ** ** ** * * ** *** ** *
consensus_9581#0 TGTGTTTGTTCTACCGACTAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTG 120
consensus_9581#1 GGGAAACGAGGTGGGAATGCATAGAC--AGCTATGAGGTTG---GCTTACAAGCAC---- 101
* * * * **** ** *** ** * **** ****
consensus_9581#0 CAGTTTTCACTCGGGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGA 180
consensus_9581#1 ---TCACCCTTTAGAGAAAGCGTAATAGCTCA---CTAGTC--TAGTCGTTCTGCGCGGA 153
* * * * * *** *** **** * *** * * * * **
consensus_9581#0 GTCATATGATCGTTCATTTGTTGGGAATT-AAGCTCCTTTCATCGAAGTGGGTGTCTGTG 239
consensus_9581#1 AG-ATGTAACGGTGCTCAAACTGTGCACCGAAACTGCTGATATCAAA--TGATAT----- 205
** * * ** * ** * * ** ** ** *** ** * * *
consensus_9581#0 CAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGTTTGGTACAATTGAGTGCT 299
consensus_9581#1 --GGTCTGGGATCGTTCTGTTTGTCTGT------TAAGGTGTCTTGTTG---CAGATGCT 254
* * ** ** * *** * *** *** **** * ** ****
consensus_9581#0 AGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGG 359
consensus_9581#1 GG---ACATATCATAATTGCCAATGCTGGCATGAT--TAACTATAAAGGGAGTG----AA 305
* ** * **** * * * *** * * * * ** ****
consensus_9581#0 AAGTCCTGTAAATGCGATGACAGGACTACCAA-ATAATCACCACTGGCTTTTATTCTGAG 418
consensus_9581#1 CAGCTTCCTCACCGAGAGCGCAAGGTTTCCTACGCAACTATCATCG--TCGTATGGTGAC 363
** * * * ** ** * * ** * ** * ** * * *** ***
consensus_9581#0 CCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGT 478
consensus_9581#1 TC--GGCCCCTAACGTTACGCAGAAATGCGTAACCTAATGGGAAACACGTCAATATTTCT 421
* * * * ***** * * * * ** ** ** * * * * ** *
consensus_9581#0 CGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGA 538
consensus_9581#1 GTA--------------------------------------------------------- 424
*
consensus_9581#0 GAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTAT 598
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 GTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTT 658
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 TCAAGTGGGCATCATGCCTTTCGGATGTGTGCAACGTGTTATTTTTAAGCTTTTTAAGGG 718
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 GTACACTTGCCAAATGTAGGGCCTCGATTAATGAAGTTGCTGGTTTTATTTACGTCAAGA 778
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 CAATTTGATTGAGCAATGAATTTGTTGGCGAATACCGTATAAGTAGTTGTAGAAGTAATA 838
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 AAAGAAGAAGGAGGGTGAGCGGGTGTTGATGTGAAAGTGAGAGAATGCAGGGTAAGTTTT 898
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 TATTCGGTGGCGTGAATGGATGTGGCAAGAGATCAGTTATGGGCTTTGGTCTGTTGGATT 958
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 TATGCCTGCCTAATGAAGCGTTTAGTGAATGTTTAATAAAGGGCATCTGANCAAGGCTGG 1018
consensus_9581#1 ------------------------------------------------------------
consensus_9581#0 TTAATAAGCCTAGTGCTTCAGTGATGCNCAAATGGACGTAG 1059
consensus_9581#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||