These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 845 fasta sequence [AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGAAATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCTGTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTTGTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGGAATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAGGATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT-AATGTAATAGCATGA-TCTGGATAATTTGCA-TTTAAAAATGTAAAATGTCTTCC] [+] EMBL CD147064 [AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGAAATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCTGTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTTGTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGGAATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAGGATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCA ] [+] EMBL CD147250 [AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGAAATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCTGTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTTGTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGGAATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAGGATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATC ] [+] EMBL CD158200 [ AGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGAAGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCNACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGNGCAACATATGGTGTTTCTTCACCTACAAAAGCTCCAGAAACACCAGATGGTACTAAATGT ATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTC ] [-] EMBL CD158182 [ GTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTA TATCTACCACTGATGTATTCAAATTACAATGAATGCCAGAAGTAGTAGGAGTNCCTGTAAG TTTGAAATATTAGATGTATCTGAAGTGCTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCTAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTTCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC] [-] EMBL CD193417 [ TTTGAAAGATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGGTATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAAGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC] [-] EMBL CD158169 [ TAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC] [-] EMBL CD157950 [ AACTAAACATATACGTAAATGTCTTTCTGGCCAGCGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC] [-] EMBL CD157994 [ TCATTAGGATATAATAAACACGAAAATTGAAATTCCATCTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC] [-] EMBL CD157988 [ ATCGTCTGTCAATAAATTCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAAGCTCCAGAAACACCAGATGGTACT AATGTAACAGCATGAGTCTGGATAATTTGCATTTTAAAAAGGTAAAAGGTCTTCC] consensusID : consensus_9583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [TATTGTCGACACTATTATTACCAATATTGTTATTACTGTCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCNNATGCAGTTCATTAGGGGGTGNTCCCCAAAAAAATTAAAATACCNNCTGAAAAGAANNTCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAAAAAATGGTGTTTCTTCACTAACAAAAGCTCCAGNNACACCAGATGGTACTAAAGTNNTNGCNTGNTCTGGNTNNTTTGCNTTTNNNNNTGTGATTTGTTCTTCCCC] [-] EMBL CD157905 [TATTGTCGACACTATTATTACCAATATTGTTATTACTGTCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCNNATGCAGTTCATTAGGGGGTGNTCCCCAAAAAAATTAAAATACCNNCTGAAAAGAANNTCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAAAAAATGGTGTTTCTTCACTAACAAAAGCTCCAGNNACACCAGATGGTACTAAAGTNNTNGCNTGNTCTGGNTNNTTTGCNTTTNNNNNTGTGATTTGTTCTTCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9583#0 AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGA 60 consensus_9583#1 ------------------------------------------------------------ consensus_9583#0 AATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCT 120 consensus_9583#1 ------------------------------------------------------------ consensus_9583#0 GTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTT 180 consensus_9583#1 ------------------------------------------------------------ consensus_9583#0 GTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGG 240 consensus_9583#1 ------------------------------------------------------------ consensus_9583#0 AATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAG 300 consensus_9583#1 ------------------------------------------------------------ consensus_9583#0 GATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACC 360 consensus_9583#1 ------------------------------------------------------------ consensus_9583#0 ACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAA 420 consensus_9583#1 ------------------------------------------------------------ consensus_9583#0 ATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTA 480 consensus_9583#1 -------------------------TATTGTCGACACTATTATTACCAATATTGTTATTA 35 *********************************** consensus_9583#0 CTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGT 540 consensus_9583#1 CTGTCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGT 95 ** ********************************************************* consensus_9583#0 ATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAA 600 consensus_9583#1 ATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAA 155 ************************************************************ consensus_9583#0 CATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGA 660 consensus_9583#1 CATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCNNATGCAGTTCATTAGGG 215 ****************************************** *************** consensus_9583#0 TATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATC 720 consensus_9583#1 GGTGNTCCCCAAAAAAATTAAAATACCNNCTGAAA-AGAANNTCGTCTGTCAATAAGATC 274 * * ** ****** **** ** *** **** ****************** consensus_9583#0 TGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACA 780 consensus_9583#1 TGTAACCATGGTCCACGGGCAAAAAATGGTGTTTCTTCACTAACAAAAGCTCCAGNNACA 334 ********************** * ********************** ******* *** consensus_9583#0 CCAGATGGTACTAATGTAATAGCATGATCTGGATAATTTGCATTTAAAAATGTAAAATGT 840 consensus_9583#1 CCAGATGGTACTAAAGTNNTNGCNTGNTCTGGNTNNTTTGCNTTTNNNNNTGTGATTTGT 394 ************** ** * ** ** ***** * ***** *** *** * *** consensus_9583#0 CTTCC--- 845 consensus_9583#1 TCTTCCCC 402 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||