cluster # 9583

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Schistosoma mansoni
cluster # 9583 cluster # 9583 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9583#0 length = 845 sequences # 9

consensus_9583#1 length = 402 sequences # 1

consensusID : consensus_9583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 845
fasta sequence

                              [AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGAAATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCTGTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTTGTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGGAATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAGGATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT-AATGTAATAGCATGA-TCTGGATAATTTGCA-TTTAAAAATGTAAAATGTCTTCC]

[+] EMBL CD147064             [AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGAAATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCTGTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTTGTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGGAATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAGGATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD147250             [AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGAAATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCTGTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTTGTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGGAATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAGGATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATC                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD158200             [                                                                                                                                                                                                                                                                                                                    AGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACCACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAAATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGAAGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCNACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGNGCAACATATGGTGTTTCTTCACCTACAAAAGCTCCAGAAACACCAGATGGTACTAAATGT ATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTC ]
[-] EMBL CD158182             [                                                                                                                                                                                                                                                                                                                     GTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTA TATCTACCACTGATGTATTCAAATTACAATGAATGCCAGAAGTAGTAGGAGTNCCTGTAAG TTTGAAATATTAGATGTATCTGAAGTGCTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCTAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTTCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC]
[-] EMBL CD193417             [                                                                                                                                                                                                                                                                                                                                                                                                                              TTTGAAAGATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGGTATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAAGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC]
[-] EMBL CD158169             [                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTACTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC]
[-] EMBL CD157950             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AACTAAACATATACGTAAATGTCTTTCTGGCCAGCGAAAAACTAACGGCAAATGCAGTTCATTAGGATATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC]
[-] EMBL CD157994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCATTAGGATATAATAAACACGAAAATTGAAATTCCATCTGTTCTAGAAAATCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACACCAGATGGTACT AATGTAATAGCATGA TCTGGATAATTTGCA TTTAAAAATGTAAAATGTCTTCC]
[-] EMBL CD157988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCGTCTGTCAATAAATTCTGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAAGCTCCAGAAACACCAGATGGTACT AATGTAACAGCATGAGTCTGGATAATTTGCATTTTAAAAAGGTAAAAGGTCTTCC]




>consensus_9583#0
AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGA
AATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCT
GTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTT
GTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGG
AATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAG
GATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACC
ACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAA
ATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTA
CTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGT
ATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAA
CATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGA
TATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATC
TGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACA
CCAGATGGTACTAATGTAATAGCATGATCTGGATAATTTGCATTTAAAAATGTAAAATGT
CTTCC

consensusID : consensus_9583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [TATTGTCGACACTATTATTACCAATATTGTTATTACTGTCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCNNATGCAGTTCATTAGGGGGTGNTCCCCAAAAAAATTAAAATACCNNCTGAAAAGAANNTCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAAAAAATGGTGTTTCTTCACTAACAAAAGCTCCAGNNACACCAGATGGTACTAAAGTNNTNGCNTGNTCTGGNTNNTTTGCNTTTNNNNNTGTGATTTGTTCTTCCCC]

[-] EMBL CD157905             [TATTGTCGACACTATTATTACCAATATTGTTATTACTGTCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCNNATGCAGTTCATTAGGGGGTGNTCCCCAAAAAAATTAAAATACCNNCTGAAAAGAANNTCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAAAAAATGGTGTTTCTTCACTAACAAAAGCTCCAGNNACACCAGATGGTACTAAAGTNNTNGCNTGNTCTGGNTNNTTTGCNTTTNNNNNTGTGATTTGTTCTTCCCC]




>consensus_9583#1
TATTGTCGACACTATTATTACCAATATTGTTATTACTGTCGTTCATTAAAGACACCGGGT
TTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGTATTGATGGTAAGCCTCCGTTTGATG
ATGGTGGCGGTGATGATGAACTGACGTCAACTAAACATATACGTAAATGTCTTTCTGGCC
AACGAAAAACTAACGGCNNATGCAGTTCATTAGGGGGTGNTCCCCAAAAAAATTAAAATA
CCNNCTGAAAAGAANNTCGTCTGTCAATAAGATCTGTAACCATGGTCCACGGGCAAAAAA
TGGTGTTTCTTCACTAACAAAAGCTCCAGNNACACCAGATGGTACTAAAGTNNTNGCNTG
NTCTGGNTNNTTTGCNTTTNNNNNTGTGATTTGTTCTTCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9583#0      AAATTCGGCAACGTAGATGCGGATGGTTGAATTAATGATGTAGGTGATGATGACGTTTGA 60
consensus_9583#1      ------------------------------------------------------------
                                                                                  

consensus_9583#0      AATATAGGCACTGAAGTTACAGTCTGATTTATTGGAGGAAATGATTTTCTGAGTAATTCT 120
consensus_9583#1      ------------------------------------------------------------
                                                                                  

consensus_9583#0      GTTTGAGATTGATCATTATTAGTAGTATTAATATTGTCACTAATGCTACTAGAATTATTT 180
consensus_9583#1      ------------------------------------------------------------
                                                                                  

consensus_9583#0      GTAGCCATGGCACTGAATAACGATGATAAAACATTTGGTGGTGGTATACATCCAGGTGGG 240
consensus_9583#1      ------------------------------------------------------------
                                                                                  

consensus_9583#0      AATAACGATAAGAATGAAGGGAGTAAATCAGACTTTGCAAATGCACTCGGAATGATTGAG 300
consensus_9583#1      ------------------------------------------------------------
                                                                                  

consensus_9583#0      GATTGTGGAGTACTCTCAACACTACCACTGTTATTACTAGATATCAATCTATTATCTACC 360
consensus_9583#1      ------------------------------------------------------------
                                                                                  

consensus_9583#0      ACTGATGTATTCCAATTACAATGAATGCCAGAAGTAGTAGGAGTACCTGTAAGTTTTGAA 420
consensus_9583#1      ------------------------------------------------------------
                                                                                  

consensus_9583#0      ATATTAGATGTATCTGAAGTGTTGCTATTGTCGACACTATTATTACCAATATTGTTATTA 480
consensus_9583#1      -------------------------TATTGTCGACACTATTATTACCAATATTGTTATTA 35
                                               ***********************************

consensus_9583#0      CTATCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGT 540
consensus_9583#1      CTGTCGTTCATTAAAGACACCGGGTTTGGCACAGATGCTGTCTGTGAATGCGGGAGAGGT 95
                      ** *********************************************************

consensus_9583#0      ATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAA 600
consensus_9583#1      ATTGATGGTAAGCCTCCGTTTGATGATGGTGGCGGTGATGATGAACTGACGTCAACTAAA 155
                      ************************************************************

consensus_9583#0      CATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCAAATGCAGTTCATTAGGA 660
consensus_9583#1      CATATACGTAAATGTCTTTCTGGCCAACGAAAAACTAACGGCNNATGCAGTTCATTAGGG 215
                      ******************************************  *************** 

consensus_9583#0      TATAATAAACACGAAAATTGAAATTCCAACTGTTCTAGAAAATCGTCTGTCAATAAGATC 720
consensus_9583#1      GGTGNTCCCCAAAAAAATTAAAATACCNNCTGAAA-AGAANNTCGTCTGTCAATAAGATC 274
                        *  *   **  ****** **** **  ***    ****  ******************

consensus_9583#0      TGTAACCATGGTCCACGGGCAACATATGGTGTTTCTTCACTAACAAAGGCTCCAGAAACA 780
consensus_9583#1      TGTAACCATGGTCCACGGGCAAAAAATGGTGTTTCTTCACTAACAAAAGCTCCAGNNACA 334
                      ********************** * ********************** *******  ***

consensus_9583#0      CCAGATGGTACTAATGTAATAGCATGATCTGGATAATTTGCATTTAAAAATGTAAAATGT 840
consensus_9583#1      CCAGATGGTACTAAAGTNNTNGCNTGNTCTGGNTNNTTTGCNTTTNNNNNTGTGATTTGT 394
                      ************** **  * ** ** ***** *  ***** ***     *** *  ***

consensus_9583#0      CTTCC--- 845
consensus_9583#1      TCTTCCCC 402
                        * *