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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1213 fasta sequence
[ACGAAGGTCATTAAGATTGAATCAATCACTATCCAAACATTCTTATGGTGCATATCTTAATGATGATGATGTGAATAAAAATTTAAACAAATTAAATAAGCATCGAAGACGTTTTCAACTAGGAGGAGGAATATCTTCAAGAAAGAATATTTTGACAAGTAATAATTCAGTTACTTGTGATTCTTCATGGATTTCTGATTCGTTGAATCTTATCCAAGAACTGTTTAGCCATCGTAGAAGTTTTTATTTTCGTTTACCAATTGATCCTTTAGAATATCCAGATTATCATAGTATCATTGAACGTCCAATGGATTTATCTACTATTCAAAAGAAACTCATAAATGCTCAATCAAGTTTGCATTCATCATCATCACCAACAACAAAATATCAAATTCGTAGTCGTATCCAACAAGAATATCATCCTAGAGATTTGTTACTCGATTTAAATTTAATAGTAGCCAATGCAAAATTGTATAATACTGATCCTGATACTCAAGTGTTTGATGATACTTTATGGTTGGAAAATTGGGTGAATGATGTAATAACACCATGTTTGTTACGATTTACAGAATCCTTTGATAATGATGATACATCGTCTTGTACGAAAATGAAATTGGAGGCAATTTCTCATCAAGAAAATAACCATGACAGATATTCTATACGGCAGTCACGTTCGACACGATCTGGAAATACTTCTAATGATGAAAAGAGTTGTATAATAAATGATGGAACATTGACGCTATCACCACCAGCTGCAACTTCTTCCACAACAGTGCGTACTTCTAGTGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAGTATAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAAACGACTAATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATATTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGAAATCAATAAGAATGTCTAATTCTTCAGAAGATCTATCAAATACACCTTTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTCCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCGACTGATGTAAGTGCTAATCATGTAAAATAACGGCGATAACATTCTTTTTGTAAATTCTGTCTACTTTTGTTTTCTCT]
[+] EMBL CD168996 [ACGAAGGTCATTAAGATTGAATCAATCACTATCCAAACATTCTTATGGTGCATATCTTAATGATGATGATGTGAATAAAAATTTAAACAAATTAAATAAGCATCGAAGACGTTTTCAACTAGGAGGAGGAATATCTTCAAGAAAGAATATTTTGACAAGTAATAATTCAGTTACTTGTGATTCTTCATGGATTTCTGATTCGTTGAATCTTATCCAAGAACTGTTTAGCCATCGTAGAAGTTTTTATTTTCGTTTACCAATTGATCCTTTAGAATATCCAGATTATCATAGTATCATTGAACGTCCAATGGATTTATCTACTATTCAAAAGAAACTCATAAATGCTCAATCAAGTTTGCATTCATCATCATCACCAACAACAAAATATCAAATTCGTAGTCGTATCCAACAAGAATATCATCCTAGAGATTTGTTACTCGATTTAAATTTAATAGTAGCCAATGCAAAATTGTATAATACTGATCCTGATACTCAAGTGTTTGATGATACTTTATGGTTGGAAAATTGGGTGAATGATGTAATAACACCATGTTTGTTACGATTTACAGAATCCTTTGATAATGATGATACATCGTCTTGTACGAAAATGAAATTGGAGGCAATTTCTCATCAAGAAAATAACC ]
[+] EMBL CD168965 [ACGAAGGTCATTAAGATTGAATCAATCACTATCCAAACATTCTTATGGTGCATATCTTAATGATGATGATGTGAATAAAAATTTAAACAAATTAAATAAGCATCGAAGACGTTTTCAACTAGGAGGAGGAATATCTTCAAGAAAGAATATTTTGACAAGTAATAATTCAGTTACTTGTGATTCTTCATGGATTTCTGATTCGTTGAATCTTATCCAAGAACTGTTTAGCCATCGTAGAAGTTTTTATTTTCGTTTACCAATTGATCCTTTAGAATATCCAGATTATCATAGTATCATTGAACGTCCAATGGATTTATCTACTATTCAAAAGAAACTCATAAATGCTCAATCAAGTTTGCATTCATCATCATCACCAACAACAAAATATCAAATTCGTAGTCGTATCCAACAAGAATATCATCCTAGAGATTTGTTACTCGATTTAAATTTAATAGTAGCCAATGCAAAATTGTATAATACTGATCCTGATACTCAAGTGTTTGATGATACTTTATGGTTGGAAAATTGGGTGAATGATGTAATAACACCATGTTTGTTACGATTTACAGAATCCTTTGATA ]
[+] EMBL CD139672 [ TGGTGCATATCTTAATGATGATGATGTGAATAAAAATTTAAACAAATTAAATAAGCATCGAAGACGTTTTCAACTAGGAGGAGGAATATCTTCAAGAAAGAATATTTTGACAAGTAATAATTCAGTTACTTGTGATTCTTCATGGATTTCTGATTCGTTGAATCTTATCCAAGAACTGTTTAGCCATCGTAGAAGTTTTTATTTTCGTTTACC ATTGATCCTTTAGAATATCCAGATTATCATAGTATCATTGAACGTCCAATGGATTTATCTA ]
[-] EMBL CD129908 [ TCTGATTCGTTGAATCTTATCCATGAACTGTTTAGCCATCGTAGAAGTTNTTATTTTCGTTTACCAATTGATCCTTTAGAATATCCAGATTATCATAGTATCATTGAACGTCCAATGGATTTATCTACTATTCAAAAGAAACTCATAAATGCTCAATCAAGTTTGCATTCATCATCATCACCAACAACAAAATATCAAATTCGTAGTCGTATCCAGCAAGAATATCATCCTAGAGATTTGTTATTCGATTTAAATTTAATAGTAGCCAATGCAAAATTGTATAATACTGATCCTGATACTCAAGTGTTTGATGATACTTTATGGTTGGAAAATTGGGTGAATGATGTAATAACACCATGTTTGTTACGATTTACAGAATCCTTTGATAATGATGATACATCGTCTTGTACGAAAATGAAATTGGAGGCAATTTCTCATCAAGAAATAAACCATGACAGATATTCTATACGGCAGTCACGTTCGACACGATCTGGAAATACTTCTAATGATGAAAAGAGTTGTATAATAAATGATGGAACATTGACGCTATCACCACCAGCTGCAACTTCTTCCACAACAGTGCGTACTTCTAGTGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGAT ]
[+] EMBL CD093817 [ CACAACAGTGCGTACTTCTAGTGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAGTATAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAAACGACTAATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATATTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGAAATCAATAAGAATGTCTAATTCTTCAGAAGATCTATCAAATACACCTTTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTCCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCGACTGATGTAAGTGCTAATCATGTAAAATAACGGCGATAACATTCTTTTTGTAAATTCTGTCTACTTTTGTTTTCTCT]
consensusID : consensus_9587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 540 fasta sequence
[AACAGTGCGTACTTCTAGCGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAATATAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAAACGACTGATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATATTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGACATCAATAAGGATGTCTAATTCTTCAGAAGATCTATCAAATACATCTTTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTTCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCAACTGATGTAACCGATTTTAAGTGTTAATCATGTGAAATAACGGCGATAACATTCTTTTTGTAAATTCTGTCTACTTTTGTTTTCCCTCGGTTTTTCGGCAGCATGTAGATATTCTCATTTTACTTAAGTAATAATACTGTAAACATGTTCAATGTACTTTGTTAACTATTTA]
[+] EMBL CD164877 [AACAGTGCGTACTTCTAGCGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAATATAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAAACGACTGATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATATTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGACATCAATAAGGATGTCTAATTCTTCAGAAGATCTATCAAATACATCTTTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTTCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCAACTGATGTAACCGATTTTAAGTGTTAATCATGTGAAATAACGGCGATAACATTCTTTTTGTGAATTCTGCCTACTTTTGTTTTCCCT ]
[+] EMBL CD164854 [AACAGTGCGTACTTCTAGCGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAATACAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAACCGACTGATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATATTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGACATCAATAAGGATGTCTAATTCTTCAGAAGATCTATCAAATACATCTTTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTTCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCAACTGATGTAACCGATTTTAAGTGTTAATCATGTGAAATAACGGCGATAACGTTCTTTTTGTAAATTCTGTCTACTTCTGTTTTCCCT ]
[-] EMBL CD164861 [ ACAGTGCGTACTTCTAGCGGTCGGGTTGTTAGACCTCCACCGCGGGGTTCACAAGATCTGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAATATAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAAACGACTGATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATACTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGACATCAATAAGGATGTCTAATTCTTCAGAAGATCTATCAAATACATCCTTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTTCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCAACTGATGTAACCGATTTTAAGTGTTAATCATGTGAAATAACGGCGATAACATTCTTTTTGTAAATTCTGTCTACTTTTGTTTTCCCTC ]
[-] EMBL CD164804 [ ACAGTGCGTACTTCTAGCGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAATATAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAAACGACTGATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATATTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGACATCAATAAGGATGTCTAATTCTTCAGAAGATCTATCAAATACATCTTTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTTCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCAACTGATGTAACCGATTTTAAGTGTTAATCATGTGAAATAACGGCGATAACATTCTTTTTGTAAATTCTGTCTACTTTTGTTTTCCCT ]
[+] EMBL CD178548 [ TGTGCTCATCTTTTTCCGAAGACTACAGTCAAAAATATAATTGTTCATCTGAACAAAAACAATCTCATCAAAGAAGAAAACGACTGATTTCATATTCTTCAGGGAATAATACACATTCTGTAAATAAATTATATTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGACATCAATAAGGATGTCTAATTCTTCAGAAGATCTATCAAATACATCTCTTCTTCGTCGTAGTGCACGTAAACGAAAAATTGTTTCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCAACTGATGTAACCGATTTTAAGTGTTAATCATGTGAAATAACGGCGATAACATTCTTTTTGTAAATTCTGTCTACTTTTGTTTTCCCTCGGTTTTTCGGCAGCATGTAGATATTCTCATTTTACTTAAGTAATAATACTGTAAACATGTTCAATGTACTTTGTTAACTATTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9587#0 ACGAAGGTCATTAAGATTGAATCAATCACTATCCAAACATTCTTATGGTGCATATCTTAA 60
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 TGATGATGATGTGAATAAAAATTTAAACAAATTAAATAAGCATCGAAGACGTTTTCAACT 120
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 AGGAGGAGGAATATCTTCAAGAAAGAATATTTTGACAAGTAATAATTCAGTTACTTGTGA 180
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 TTCTTCATGGATTTCTGATTCGTTGAATCTTATCCAAGAACTGTTTAGCCATCGTAGAAG 240
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 TTTTTATTTTCGTTTACCAATTGATCCTTTAGAATATCCAGATTATCATAGTATCATTGA 300
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 ACGTCCAATGGATTTATCTACTATTCAAAAGAAACTCATAAATGCTCAATCAAGTTTGCA 360
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 TTCATCATCATCACCAACAACAAAATATCAAATTCGTAGTCGTATCCAACAAGAATATCA 420
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 TCCTAGAGATTTGTTACTCGATTTAAATTTAATAGTAGCCAATGCAAAATTGTATAATAC 480
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 TGATCCTGATACTCAAGTGTTTGATGATACTTTATGGTTGGAAAATTGGGTGAATGATGT 540
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 AATAACACCATGTTTGTTACGATTTACAGAATCCTTTGATAATGATGATACATCGTCTTG 600
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 TACGAAAATGAAATTGGAGGCAATTTCTCATCAAGAAAATAACCATGACAGATATTCTAT 660
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 ACGGCAGTCACGTTCGACACGATCTGGAAATACTTCTAATGATGAAAAGAGTTGTATAAT 720
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 AAATGATGGAACATTGACGCTATCACCACCAGCTGCAACTTCTTCCACAACAGTGCGTAC 780
consensus_9587#1 ------------------------------------------------AACAGTGCGTAC 12
************
consensus_9587#0 TTCTAGTGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTT 840
consensus_9587#1 TTCTAGCGGTCGGGTTGTTAGACCTCCACCACGGGGTTCACAAGATCTGTGCTCATCTTT 72
****** *****************************************************
consensus_9587#0 TTCCGAAGACTACAGTCAAAAGTATAATTGTTCATCTGAACAAAAACAATCTCATCAAAG 900
consensus_9587#1 TTCCGAAGACTACAGTCAAAAATATAATTGTTCATCTGAACAAAAACAATCTCATCAAAG 132
********************* **************************************
consensus_9587#0 AAGAAAACGACTAATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATA 960
consensus_9587#1 AAGAAAACGACTGATTTCATGTTCTTCAGGGAATAATACACATTCTGTAAATAAATTATA 192
************ ***********************************************
consensus_9587#0 TTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGAAATCAATAAGAAT 1020
consensus_9587#1 TTCCAGACATACAAACAGGAGACGTCGCCGTCATACAAATCAGTCGACATCAATAAGGAT 252
*********************************************** ********* **
consensus_9587#0 GTCTAATTCTTCAGAAGATCTATCAAATACACCTTTTCTTCGTCGTAGTGCACGTAAACG 1080
consensus_9587#1 GTCTAATTCTTCAGAAGATCTATCAAATACATCTTTTCTTCGTCGTAGTGCACGTAAACG 312
******************************* ****************************
consensus_9587#0 AAAAATTGTTCCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCGACTG 1140
consensus_9587#1 AAAAATTGTTTCTAGTTTTAGTCAATTTTATGGATCTGAAGGAAATGATGAATTCAACTG 372
********** ******************************************** ****
consensus_9587#0 ATGTAA----------GTGCTAATCATGTAAAATAACGGCGATAACATTCTTTTTGTAAA 1190
consensus_9587#1 ATGTAACCGATTTTAAGTGTTAATCATGTGAAATAACGGCGATAACATTCTTTTTGTAAA 432
****** *** ********* ******************************
consensus_9587#0 TTCTGTCTACTTTTGTTTTCTCT------------------------------------- 1213
consensus_9587#1 TTCTGTCTACTTTTGTTTTCCCTCGGTTTTTCGGCAGCATGTAGATATTCTCATTTTACT 492
******************** **
consensus_9587#0 ------------------------------------------------
consensus_9587#1 TAAGTAATAATACTGTAAACATGTTCAATGTACTTTGTTAACTATTTA 540
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||