These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 584 fasta sequence [CGAGGCCAAAGTGGAAATGGCTCCCGTTTCATCAGTTAACAAAGAGACTGTTAGTGAACTTAACCCAACTCAAAAAGTTATAACTGCTCCACCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGG] [+] EMBL CD084391 [CGAGGCCAAAGTGGAAATGGCTCCCGTTTCATCAGTTAACAAAGAGACTGTTAGTGAACTTAACCCAACTCAAAAAGTTATAACTGCTCCACCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACT ] [+] EMBL AI976088 [ ACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATCTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGG] [+] EMBL CD164824 [ AGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAATACAACTACAAATGATCAAGTCTATAAAAAGAAA ] [+] EMBL CD164889 [ AGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAATTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAA ] consensusID : consensus_9588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence [CAACAGTACTACCACCAGTACCGCCTACAATTTATCGTTGTACCAGTACAACTACAAATGATCAAGTCCATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTTTTTATTTGGGAAATGAAGTAACAGATGACACTCTAGCACGAGCGTTTAACCGCTACCCTTCTTTTCAAAAAGCAAAAGTTGTTCGAGACAAACGTACCAGTAAATCTCGTGGTTATGGTTTCGTTAGCTTTTCTGATCCTGGAGATTTCACTCGCGCCATGCGAGAAATGAATGGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGGAAGTCCATAGAAAAAAGGAGAAAGAAAAACGAAAACTTGGTTTAAAGAACTGATTTTTTTCACCAAAGCTCATTAAATTTTTCTGTGAATAAAAAAAAAAAAAAA] [-] EMBL CD149113 [CAACAGTACTACCACCAGTACCGCCTACAATTTATCGTTGTACCAGTACAACTACAAATGATCAAGTCCATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTTTTTATTTGGGA ] [-] EMBL AI395362 [ ATCAAGTCTATAAAAAGAAAAAGTATATTCGCACAGCTGCTGGACCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTGGGGATTTGGGAAATGAAGTAACAGATGACACTCTAGCACGAGCGTTTAACCGCTACCCTTCTTTTCAAAAAGCAAAAGTTGTTCGAGACAAACGTACCAGTAAATCTCGTGGTTATGGTTTCGTTAGCTTTTCTGATCCTGGAGATTTCACTCGCGCCATGCGAGAAATGAATGGTAAATATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGGAAGTCCATAGAAAAAAGGAGAAAGAAAAACGAAAACTTGGTTTAAAGAACTGATTTTTTTCACCAAAGCTCATTAAATTTTTCTGTGAATAAAAAAAAAAAAAAA] consensusID : consensus_9588#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 374 fasta sequence [ATTTTGAGGCTTTGTATTTCAAAAGTAGGAAAATATTCACAGAAAAATTTAATGAGCTTTGGTGAAAAAAATCAGTTCTTTAAACCAAGTTTTCGTTTTTCTTTCTCCTTTTTTTCTATGGACTTCCAGTTGACGATTGCGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTTTTTGAAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAGAGTGTCATCTGTTACTTCATTTCCCAAATCCCCACAAAAAAAAC] [+] EMBL CD134490 [ATTTTGAGGCTTTGTATTTCAAAAGTAGGAAAATATTCACAGAAAAATTTAATGAGCTTTGGTGAAAAAAATCAGTTCTTTAAACCAAGTTTTCGTTTTTCTTTCTCCTTTTTTTCTATGGACTTCCAGTTGACGATTGCGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTT ] [-] EMBL CD080282 [ CCAGTTGACGATTACGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTTTTTGAAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAGAGTGTCATCTGTTACTTCATTTCCCAAATCCCCACAAAAAAAAC] [+] EMBL CD074200 [ CAGTTGACGATTTTTCCACTCGCTTTTCTTCAGTTTGATTGGACGATTACCAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGGATCAGAAAAGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTTTTTGAAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAAAGTGTCATCTGTTACTTCATTTCCCAAATCCCCACAAAAAAAA ] consensusID : consensus_9588#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CGCGGCAAGAATTCGTTTCGAGGCCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCAGGGGCCAGA] [+] EMBL CD077719 [CGCGGCAAGAATTCGTTTCGAGGCCACAAATGGCTGGACCAAACGAGTTAGCGGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAAGACGAAGACGATGATGTTACTCGAGCATTGCTAGCTGCGGCAGCGGGAGTTACTTATACTCGAGTCCAGGGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCCGCTAACACCAGTTGTTACACAAACGAGTAAAAAATCAAAGGTAAACGATCTCAATACAGATGCGGAAGCGAACAAAGTAACACAAACAACAGTACTACCACCAGTACCAGGGGCCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9588#0 ---CGAGGCCAAAGTGGAAATGGCTCCCGTTTCATCAGTTAACAAAGAGACTGTTAGTGA 57 consensus_9588#3 ------------------------------------------------------------ consensus_9588#1 CAACAGTACTACCACCAGTACCGCCTACAATTTATCGTTGTACCAGTACAACTACAAATG 60 consensus_9588#2 ------------------------------------------------------------ consensus_9588#0 ACTTAACCCAACTCAAAAAGTTATAACTGCTCCACCACAAATGGCTGGACCAAACGAGTT 117 consensus_9588#3 -----------CGCGGCAAGAATTCGTTTCGAGGCCACAAATGGCTGGACCAAACGAGTT 49 consensus_9588#1 ATCAAGTCCATAAAAAGAAAAAGTATATTCG----CACAGCTGCTGGAGCCATTTGGGAA 116 consensus_9588#2 ---------------------------------------------------ATTTTG--A 7 * consensus_9588#0 AGC--GGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAA 175 consensus_9588#3 AGC--GGCACGAGCTAAACAAGCTGCTGCGGCGGTCGCAGCTGCCAAATCTAAAGCTGAA 107 consensus_9588#1 GACCCGACTTTGGTTGAATGGGATCCAAATGACTTCCGATTATTTTGTTTTTATTTGGGA 176 consensus_9588#2 GGC---TTTGTATTTCAAAAGTAGGAAAATATTCACAGAAAAATTTAATGAGCTTTGGTG 64 * * ** * * * * consensus_9588#0 GACGAAGACGATGATGTTACTCGAGCATTGCTAGCTG-CGGCAGCGGGAGTTACTTATAC 234 consensus_9588#3 GACGAAGACGATGATGTTACTCGAGCATTGCTAGCTG-CGGCAGCGGGAGTTACTTATAC 166 consensus_9588#1 AATGAAGTAACAGATGACACTCTAGCACGAGCGTTTAACCGCTACCCTTCTTTTCAAAAA 236 consensus_9588#2 AAAAAAATCAGTTCTTTAAACCAAGTTTT--CGTTTTTCTTTCTCCTTTTTTTCTATGGA 122 * ** * * * ** * * * ** consensus_9588#0 TCGAGTCCAG---GGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCC 291 consensus_9588#3 TCGAGTCCAG---GGGCCAGATGGAAAAGAAAAGGTTTTAGCAAGCATCACTAAACCTCC 223 consensus_9588#1 GCAAAAGTTGTTCGAGACAAACGTACCAGTAAATCTCGTGGTTATGGTTTCGTTAGCTTT 296 consensus_9588#2 CTTCCAGTTG------ACGATTGCGCCACTCGCTTTTCTTCAGTTTGATTGGACGATTAC 176 * * * * * * * consensus_9588#0 GCTAACACCAGTTGTTACACAAACGA---GTAAAAAATCAAAGGTAAACGATCTCAATAC 348 consensus_9588#3 GCTAACACCAGTTGTTACACAAACGA---GTAAAAAATCAAAGGTAAACGATCTCAATAC 280 consensus_9588#1 TCTGATCCTGGAGATTTCACTCGCGCCATGCGAGAAATGAATGGTAAAT-ATGTTGGT-- 353 consensus_9588#2 CAACATATTTACCATTCATTTCTCGCATGGCGCGAGTGAAATCTCCAGG---ATCAGAAA 233 * ** ** * * ** * * consensus_9588#0 AGATGCGGAAGCGAAC-AAAGTAACACAAACAACAGTACTACCACCAGTACCACCTACAA 407 consensus_9588#3 AGATGCGGAAGCGAAC-AAAGTAACACAAACAACAGTACTACCACCAGTACCAGGGGCCA 339 consensus_9588#1 AATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGGAAGTCCATAGA 413 consensus_9588#2 AGCTAACGAAACCATAACCACGAGATTTACTGGTACGTTTGTCTCGAACAACTTTTGCTT 293 * ** * * * * * * * consensus_9588#0 TTTATCGTTCTACCAGTACAACTACAAATGATCAAGTCTATAAAAAGAAAAAGTATATTC 467 consensus_9588#3 GA---------------------------------------------------------- 341 consensus_9588#1 AAAA----------AGGAGAAAGAAAAACGAAAACTTGGTTTAAAGAACTGATTTTTTTC 463 consensus_9588#2 TTTG----------AAAAGAAGGGTAGCGGTTAAACGCTCGTGCTAGAGTGTCATCTGTT 343 consensus_9588#0 GCACAGCTGCTGGAGCCATTTGGGAAGACCCGACTTTGGTTGAATGGGATCCAAGTAAAT 527 consensus_9588#3 ------------------------------------------------------------ consensus_9588#1 ACCAAAGCTCATTAAATTTTTCTGTGAATAAAAAAAAAAAAAAA---------------- 507 consensus_9588#2 ACTTCATTTCCCAAA---TCCCCACAAAAAAAAC-------------------------- 374 consensus_9588#0 ATGTTGGTAATCGTCCAATCAAACTGAAGAAAAGCGAGTGGCGTAATCGTCAACTGG 584 consensus_9588#3 --------------------------------------------------------- consensus_9588#1 --------------------------------------------------------- consensus_9588#2 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||