These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 634 fasta sequence [AATCTTGTTTTCAGTCCAGTTCAAATTATTACTCAATTTTTAAAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT-CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTTCATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCTGATATGACGCATG-AAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCAAAAATATGGTCCAACATGGCATTGTATAGTGGGTAGGAATTTTGGCAGTTCTATAACTCATGAACCAGATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGAATTTCATTTAGTTTAACTTACTNATCAATCTAATAACAATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATTACTGGTGGCCATGTGTNGGTAAAATGTNTATTGCTATTCTTATTATTATGGNATCAANAC] [+] EMBL SMAA28934 [AATCTTGTTTTCAGTCCAGTTCAAATTATTACTCAATTTTTAAAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTATCCATTATTATTAAAAAAAAGTTA TCACGTATCCAAGAT AAGAGATTTCATAAAGA TCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATT AAAATGCTGATATGA ] [+] EMBL SMAA14097 [ AAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTTCATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCCGTGATTAAAAATGCTGATATGACGCATG AAATG AAAAACGNGCTCTTTCTATTGGAATTGATTCAG TCGAAAATATGAATTAGAA ] [+] EMBL SMAA14067 [ AAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTTCATAAAGATTCCAATATTATTCNCTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCCGTGATTAAAAAAGCTGATAT ] [+] EMBL CD185116 [ TAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTACATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCTGATATGACGCATG AAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAA ] [+] EMBL CD202955 [ AATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCTGATATGACGCATG AAGTGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCCAAAATATGGTC ] [+] EMBL SM608 [ AAAAATGCTGATATGACGCATGNAAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCAAAAATATGGTCCAACATGGCATTGTATAGTGGGTAGGAATTTTGGCAGTTCTATAACTCATGAACCAGATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGAATTTCATTTAGTTTAACTTACTNATCAATCTAATAACAATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATTACTGGTGGCCATGTGTN ] [+] EMBL SM943 [ AAAATG TGATATGACGNATG AAATGCAAAAACGTGCTCTTTCTATTGGAATGGATTCAGTNCGAAANTATGATTTAGAAAANGATTTNGCTGANCATTTAAAAAANGAGTTGGATCAAAANTNTGGTCCAACATGGCATGGTNTAGTGGGTAGGAATTTGGGCAGTTCTATAACTCATGAACCAGATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGAATTTCATTTAGTTTAACTTACTTATCAATCTAATAACAATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGT GNCATGTGTGGGTAAAATGTNTATTGCTATTCTTATTATTATGGNATCAANAC] consensusID : consensus_9599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [TTGNATTCAGNTCGNAAAATATGAAATTAGAAAAAGATATAGCTGATCATTTACAAAAAGAGTTTGATCAAAAATATGGCCCAACATGGNATTGTTTAGTGGGTAGGAATGTTGGCAGTNCTATAACTCATGAACCAGATAGTNTCATCTATTTNNACGTGGAGAAGTATGCTGNACTACTATATACATCAGGATAGAATTTCATNTAGTTTAACTTACTTATCANTCTAATAACAATNATCCANGTGAAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTNGNTCATGTGTTGTGNTTAANATGTTTNATTGCTATTCTTATTATTATTGTTATTCAANACAATGGNAACTGNT] [+] EMBL SM767 [TTGNATTCAGNTCGNAAAATATGAAATTAGAAAAAGATATAGCTGATCATTTACAAAAAGAGTTTGATCAAAAATATGGCCCAACATGGNATTGTTTAGTGGGTAGGAATGTTGGCAGTNCTATAACTCATGAACCAGATAGTNTCATCTATTTNNACGTGGAGAAGTATGCTGNACTACTATATACATCAGGATAGAATTTCATNTAGTTTAACTTACTTATCANTCTAATAACAATNATCCANGTGAAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTNGNTCATGTGTTGTGNTTAANATGTTTNATTGCTATTCTTATTATTATTGTTATTCAANACAATGGNAACTGNT] consensusID : consensus_9599#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [ATTTTAACTGGGGAAGTATGCTGTACTACTATTTAAATCCGGGTGAATTTCATTAGTTTAACTTACTTATCAATCTAATAACATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTAATGCTAATCTTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGTTATATTGTCAAAAAAAAAAAAHAHHAAAANNBNAAAAACATGCCATGCAACTGCATTACCCGT] [-] EMBL AI447069 [ATTTTAACTGGGGAAGTATGCTGTACTACTATTTAAATCCGGGTGAATTTCATTAGTTTAACTTACTTATCAATCTAATAACATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTAATGCTAATCTTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGTTATATTGTCAAAAAAAAAAAAHAHHAAAANNBNAAAAACATGCCATGCAACTGCATTACCCGT] consensusID : consensus_9599#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CTGTCCTCCTCACTAAATCCGGGTCGAGTGTCATTTTAGTTAGACTTCCTTTTCAATCTATTACCAATAATCCAGTGGAGTGTACTCCAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTATTGCTATTCCTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGT] [-] EMBL AI739702 [CTGTCCTCCTCACTAAATCCGGGTCGAGTGTCATTTTAGTTAGACTTCCTTTTCAATCTATTACCAATAATCCAGTGGAGTGTACTCCAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTATTGCTATTCCTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9599#2 ------------------------------------------------------------ consensus_9599#3 ------------------------------------------------------------ consensus_9599#0 AATCTTGTTTTCAGTCCAGTTCAAATTATTACTCAATTTTTAAAAGCAGTTAGCAACTAA 60 consensus_9599#1 ------------------------------------------------------------ consensus_9599#2 ------------------------------------------------------------ consensus_9599#3 ------------------------------------------------------------ consensus_9599#0 ATTATTCTTCAATAGTTTACCCTTTATCATTATTATTAAAAAAAAGTTATTCACGTATCC 120 consensus_9599#1 ------------------------------------------------------------ consensus_9599#2 ------------------------------------------------------------ consensus_9599#3 ------------------------------------------------------------ consensus_9599#0 AAGATAAAGAGATTTCATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTT 180 consensus_9599#1 ------------------------------------------------------------ consensus_9599#2 ------------------------------------------------------------ consensus_9599#3 ------------------------------------------------------------ consensus_9599#0 ATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCT 240 consensus_9599#1 ------------------------------------------------------------ consensus_9599#2 ------------------------------------------------------------ consensus_9599#3 ------------------------------------------------------------ consensus_9599#0 GATATGACGCATGAAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAA 300 consensus_9599#1 ------------------------------------------TTGNATTCAGNTCGNAAA 18 consensus_9599#2 ------------------------------------------------------------ consensus_9599#3 ------------------------------------------------------------ consensus_9599#0 -TATGAA-TTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCAAAAATATG 358 consensus_9599#1 ATATGAAATTAGAAAAAGATATAGCTGATCATTTACAAAAAGAGTTTGATCAAAAATATG 78 consensus_9599#2 ------------------------------------------------------------ consensus_9599#3 ------------------------------------------------------------ consensus_9599#0 GTCCAACATGGCATTGTATAGTGGGTAGGAATTTTGGCAGTTCTATAACTCATGAACCAG 418 consensus_9599#1 GCCCAACATGGNATTGTTTAGTGGGTAGGAATGTTGGCAGTNCTATAACTCATGAACCAG 138 consensus_9599#2 -------------ATTTTAACTGGGGAAGTATGCTGTACTACTATTTAAATCCGGGT-GA 46 consensus_9599#3 ---------------------------------CTGTCCTCCTCACTAAATCCGGGTCGA 27 consensus_9599#0 ATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGA 478 consensus_9599#1 ATAGTNTCATCTATTTNNACGTGGAGAAGTATGCTGNACTACTATATACATCAGGATAGA 198 *** ** ** ** *** ** * ** consensus_9599#2 ATTTCATT--AGTTTAACTTACTTATCAATCTAATAACA-TAATCCATGTGAA-TGTACT 102 consensus_9599#3 GTGTCATTTTAGTTAGACTTCCTTTTCAATCTATTACCAATAATCCAGTGGAG-TGTACT 86 consensus_9599#0 ATTTCATTT-AGTTTAACTTACTNATCAATCTAATAACAATAATCCATGTGAA-TGTACT 536 consensus_9599#1 ATTTCATNT-AGTTTAACTTACTTATCANTCTAATAACAATNATCCANGTGAAATGTACT 257 * **** **** **** ** *** **** ** ** * ***** ** ****** consensus_9599#2 ACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGT-CATGTGTTGTGT 161 consensus_9599#3 CCAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGT-CATGTGTTGTGT 145 consensus_9599#0 ACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATTACTGGTGGC-CATGTGTNGG-- 593 consensus_9599#1 ACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTNGNTCATGTGTTGTGN 317 ************************************ *** ** * ******* * consensus_9599#2 -TAAAATGTTTTAATGCTAATCTTATTATTATTGTTATTCAATACAATGAAACTGTTAAT 220 consensus_9599#3 -TAAAATGTTTTATTGCTATTCCTATTATTATTGTTATTCAATACAATGAAACTGTTAAT 204 consensus_9599#0 -TAAAATGTNTA-TTGCTATTCTTATTATTATGGNA--TCAANAC--------------- 634 consensus_9599#1 TTAANATGTTTNATTGCTATTCTTATTATTATTGTTATTCAANACAATGGNAACTGNT-- 375 *** **** * ***** ** ********* * **** ** consensus_9599#2 ACAATAGTTATATTGTCAAAAAAAAAAAAHAHHAAAANNBNAAAAACATGCCATGCAACT 280 consensus_9599#3 ACAATAGT---------------------------------------------------- 212 consensus_9599#0 ------------------------------------------------------------ consensus_9599#1 ------------------------------------------------------------ consensus_9599#2 GCATTACCCGT 291 consensus_9599#3 ----------- consensus_9599#0 ----------- consensus_9599#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||