These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 828 fasta sequence [GCCAANACTCTTGGCACGAGGACGTCGCTGGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTC-AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGNTCAAGCAAAATTAAAATCTGATTACTAACTTTGTACAAAAA-T-AATACAAATATCTTGTAAATAAAAGAATTTATT] [+] EMBL CD080699 [GCCAANACTCTTGGCACGAGGACGTCGCTGGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTC AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACANAATGACGATGATGATGATGAGTATCAGCTGGAATTCG AACTAGTATCAAT ATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAAGTGCTCGTCGTCTTGGTACGCTTGNTCAAGCAAAATT AAATCTGATTACTAACTTTGTACAAAAA T AATACAAATATCTTGTAAATAAAAGAATTat ] [-] EMBL CD146750 [ GGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAACCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTCTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTCAAAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGA ] [-] EMBL CD074624 [ TTCTGCGTATTCCTCCTAGTCTTATTAAACGTC AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGTTCAAGCAAAATTAAAATCTGATTACTAACTTTGTACAAAAA TAAATACAAATATCTTGTAAATAAAAGAATTTATT] [-] EMBL CD132168 [ CTAGTCTTATTAAACGTC AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTT ] [-] EMBL AI975552 [ AGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGTTCAAGCAAAATTAAAATCTGATTACTAACTTTGTACAAAAA TAAATACAAATATCTTGTAAATAAAAGAATTTATT] [-] EMBL SMT14515 [ CTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGNTGGTCAGCTGATCAANAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCNCGTAACCGCATCGCTCGTTTATTGCANCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGNTCAAGGAAAATTAAAATCTGATTACTAACTTTGTANAAAAANA AANANAAATAT ] consensusID : consensus_9602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 618 fasta sequence [AACTTACCTCCAAGAGATGTCAATCTACATGTATCCGGCTATTGCTGCCCCCGAAAGGCATTCTGTTGATTATGTTTCTCAGGGTCAGCCAGAGGGTCCAAGCATTCAGCAAGGCTCTGCCGTTGTTCCTGGAGAAATAGTTTTTTCTTCTGTCGCAAGTCTTATAACTGGCCATGGAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGATGAGGATTTATCTTCCGCAGTTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGGTACAGGCAGGCAATATACACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAAGGCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAACAACGTCGCTGGCGTGCTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGG] [-] EMBL CD157217 [AACTTACCTCCAAGAGATGTCAATCTACATGTATCCGGCTATTGCTGCCCCCGAAAGGCATTCTGTTGATTATGTTTCTCAGGGTCAGCCAGAGGGTCCAAGCATTCAGCAAGGCTCTGCCGTTGTTCCTGGAGAAATAGTTTTTTCTTCTGTCGCAAGTCTTATAACTGGCCATGGAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGATGAGGATTTATCTTCCGCAGTTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGGTACAGGCAGGCAATATACACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAAGGCCCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAACAGCGTCGC ] [-] EMBL CD189640 [ TTATAACTGGCCATGGAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGGTGAGGATTTATCTTCCGCAGTTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGATACAGGCAGGCAATATACACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAAGGCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAACAACGTCGCTGGCGTGCTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGG] [+] EMBL SMT14516 [ CTNTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAA GCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGNCCGCATTGTAGAGGTTGANCAACGTCGCTGGCGTGTTGATGTCAACTCTNCTCTNCTAGCCAATCTAG ] consensusID : consensus_9602#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GAGGTTTATCGAAGCTAGAGACATTTGACTAGAAGTACTACTACTATATATATTATATTGAAAATTAGGTAACTGAAGTCTTTAATAGACATTGTGTTTCAGCAACTTTTTAACTCATCAGTGTGTATTCATAGTATTGATTTTTACGTTGGTATTTTTCGATACATCTTTGCGTTTTTTCAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTCAAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTTA] [+] EMBL CD083557 [GAGGTTTATCGAAGCTAGAGACATTTGACTAGAAGTACTACTACTATATATATTATATTGAAAATTAGGTAACTGAAGTCTTTAATAGACATTGTGTTTCAGCAACTTTTTAACTCATCAGTGTGTATTCATAGTATTGATTTTTACGTTGGTATTTTTCGATACATCTTTGCGTTTTTTCAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTCAAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9602#0 ----------------------------------GCCAANACTCTTGGCAC-GAGGACGT 25 consensus_9602#2 ----GAGGTTTATCGAAGCTAGAGACATTTGACTAGAAGTACTACTACTAT-ATATATTA 55 consensus_9602#1 AACTTACCTCCAAGAGATGTCAATCTACATGTATCCGGCTATTGCTGCCCCCGAAAGGCA 60 * * * consensus_9602#0 CGCTGGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAA 85 consensus_9602#2 TATTGAAAATTAGGTAACTGAAGT-CTTTAATAGACATTGT-GTTTCAGCAACTTTTTAA 113 consensus_9602#1 TTCTGTTGATTATGTTTCTCAGGGTCAGCCAGAGGGTCCAAGCATTCAGCAAGGCTCTG- 119 ** * * * * ** * ** * * consensus_9602#0 CTACCTGGTG-GTGAACTTCGTCGGAAATCTGAAGATGATGAA---CGGGCTATGCGTTC 141 consensus_9602#2 CTCATCAGTGTGTATTCATAGTATTGATTTTTACGTTGGTATTTTTCGATACATCTTTGC 173 consensus_9602#1 CCGTTGTTCCTGGAGAAATAGTTTT--TTCTTCTGTCGCAAGTCTTATAACTGGCCATG- 176 * * * ** * * * * * consensus_9602#0 TTTCATGAAGGAGGGTGACCTCATTGTCGCTGAA-GTTCATGAAG------TTTACAAAG 194 consensus_9602#2 GTTTTTTCAGGAGGGTGACCTCATTGTCGCTGAA-GTTCATGAAG------TTTACAAAG 226 consensus_9602#1 GAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGATGAGGATTTATCTTCCGCAG 236 * ***** ** * * *** *** ** **** * ** * ** consensus_9602#0 ATGG----AACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGC 250 consensus_9602#2 ATGG----AACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGC 282 consensus_9602#1 TTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGGTACAGGCAGGCAATATAC 296 * *** * * ** * ** * * * ** * ** * * consensus_9602#0 TGTCTTCTGCG--TATTCCTCCTAGTCTTATTAA-ACGTCAAAAAATACATCGTCATCG- 306 consensus_9602#2 TGTCTTCTGCG--TATTCCTCCTAGTCTTATTAA-ACGTCAAAAAATACATCGTCATCG- 338 consensus_9602#1 ACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGA 356 ***** * * * *** * * ** * * ** * * ** ** consensus_9602#0 ---TCTAGCGATCC--CAAGAATGGATACACT-TGATGGTCC-TATAACA-ATATCTAAT 358 consensus_9602#2 ---TCTAGCGATCC--CAAGAATGGATACACT-TGATGGTCC-TATAACA-ATATCTAAT 390 consensus_9602#1 AGGCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAAC 416 * * *** **** * *** * *** ** ** * * * ** consensus_9602#0 GAAGTTATT--TCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAG 416 consensus_9602#2 GAAGTTATT--TCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAG 448 consensus_9602#1 AACGTCGCTGGCGTGCTGATGTCA-ACTCTGCTCTTCTAGCCA-ATCTAGCCTTGGCTAA 474 * ** * ** ** *** *** *** * * * * ** * * * * * * consensus_9602#0 CAAGAG-CTATG-GATATTGGTCTTGGCTTATCGGCTCCAGTTGA--AGCAGATTTAAAT 472 consensus_9602#2 CAAGAG-CTATG-GATATTGGTCTTGGCTTATCGGCTCCAGTTGA--AGCAGATTTTA-- 502 consensus_9602#1 TGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCG 534 ** *** * * ** *** * ** ** *** * * * * consensus_9602#0 ACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGC 532 consensus_9602#2 ------------------------------------------------------------ consensus_9602#1 TTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGG 594 consensus_9602#0 ATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGC 592 consensus_9602#2 ------------------------------------------------------------ consensus_9602#1 AACATTACAACTTCATATGCCGGG------------------------------------ 618 consensus_9602#0 GAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAA 652 consensus_9602#2 ------------------------------------------------------------ consensus_9602#1 ------------------------------------------------------------ consensus_9602#0 TTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGT 712 consensus_9602#2 ------------------------------------------------------------ consensus_9602#1 ------------------------------------------------------------ consensus_9602#0 TTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGNTCAAGCAAAATTAAAATCT 772 consensus_9602#2 ------------------------------------------------------------ consensus_9602#1 ------------------------------------------------------------ consensus_9602#0 GATTACTAACTTTGTACAAAAATAATACAAATATCTTGTAAATAAAAGAATTTATT 828 consensus_9602#2 -------------------------------------------------------- consensus_9602#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||