These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 822 fasta sequence [TTTGTCCCAACGTGAGATCTAGTCCCTCCTAAAGGAGAGTAATAGGTACTGAAGGTGGTGAACAATTTTAACATTTCGTATTATGTGCTTGTTCTGTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGGTACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATAAAACATATGCTTGGTGGATAAACGACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATTACTTTTTAAATATACCTTGAATTGTTAAAAAAAAAAAAAAAA] [+] EMBL CD124307 [TTTGTCCCAACGTGAGATCTAGTCCCTCCTAAAGGAGAGTAATAGGTACTGAAGGTGGTGAACAATTTTAACATTTCGTATTATGTGCTTGTTCTGTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTC ] [-] EMBL CD163025 [ GATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATACACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCGGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGATACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATA ] [-] EMBL AI395159 [ gtTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGCAAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGGTACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATAAAACATATGCTTGGTGGATAAACGACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATTACTTTTTAAATATACCTTGAATTGTTAAAAAAAAAAAAAAAA] [+] EMBL AA559408 [ GATAAATACAATGGCAGCAGCTACNACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGGTACNATCGCTGTTACTGTTACAAGCTGGTCTAAAATAAAACATATGCTTGGTGGATAAACNACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATTACTTTTTAAATATACCT ] consensusID : consensus_9607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 539 fasta sequence [TTANCGAGAGAGGACTTTTAACTTTGTCCCAAC-----GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAA] [+] EMBL CD197915 [TTANCGAGAGAGGACTTTTAACTTTGTCCC AT GT CTCTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAGGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGC ] [-] EMBL CD133155 [ TTTAACTTTGTCCCAACGTGAGGTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTG ] [+] EMBL CD189246 [ CTTTGTCCCAAC GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAGTATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACCATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGG ] [+] EMBL CD094970 [ TTTGTCCCAAC GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGTTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACAC ] [-] EMBL CD162963 [ TTGTCCCAAC GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTGATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAA] [-] EMBL CD188484 [ TTGTCCCAAC GTA TTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGGAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9607#0 TTTGTCCCAACGTGAGATCTAGTCCCTCCTAAAGGAGAGTAATAGGTACTGAAGGTGGTG 60 consensus_9607#1 ----------------------------------------------------------TT 2 * consensus_9607#0 AACAATTTTAACATTTCGTATTATGTGCTTGTTCTGTATTTTTTTATTCTTGAGTGGACA 120 consensus_9607#1 ANCGAGAG-AGGACTTTTAACTTTGTCCCAAC---GTATTTTTTTATTCTTGAGTGGACA 58 * * * * * ** * * *** * ************************* consensus_9607#0 TAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCT 180 consensus_9607#1 TAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCT 118 ************************************************************ consensus_9607#0 GACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCG 240 consensus_9607#1 GACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCG 178 ************************************************************ consensus_9607#0 AATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGA 300 consensus_9607#1 AATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGA 238 ************************************************************ consensus_9607#0 TCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGA 360 consensus_9607#1 TCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGA 298 ************************************************************ consensus_9607#0 TTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGA 420 consensus_9607#1 TTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGA 358 ************************************************************ consensus_9607#0 ACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCT 480 consensus_9607#1 ACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCT 418 ************************************************************ consensus_9607#0 ATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAA 540 consensus_9607#1 ATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAA 478 ************************************************************ consensus_9607#0 GATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGA 600 consensus_9607#1 GATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGA 538 ************************************************************ consensus_9607#0 ATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTT 660 consensus_9607#1 A----------------------------------------------------------- 539 * consensus_9607#0 GGTACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATAAAACATATGCTTGGTGGATAA 720 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 ACGACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATT 780 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 ACTTTTTAAATATACCTTGAATTGTTAAAAAAAAAAAAAAAA 822 consensus_9607#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||