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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1243 fasta sequence
[TCGGGCCAANATTCGGCACGAGGGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTCAACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA-GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCTCTATCATACATTTCCTGATACAAATCATTCATGTGTTTTGTTTTGTTTGTCAAAAGAAACTATAATATTTCTATTTATTACAATTTTGTAAACAATAAACAATATTTTGTTATGCATGATCATACATACATATGTATCCATTTACCAACTTCATCTATATTCGGCTTCATGTGTATCTCTAATGTACAACGACGTAAGTGAACAATGAATGTATGTTTAAATGANTTCACTAGATCGTTCTCAAT]
[+] EMBL CD080443 [TCGGGCCAANATTCGGCACGAGGGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTCAACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACANATGATCACGTCACCAACTATTCAAGAAATGANACTGAGTAGAGATCTAC ]
[+] EMBL CD070492 [ TCATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTCAACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGC ]
[-] EMBL CD155715 [ TCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTA ]
[+] EMBL CD192306 [ CAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGGAACTTTTTCTAAATTCTCT ]
[+] EMBL CD192566 [ CAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATT ]
[+] EMBL CD197801 [ TAACAGCATTTGTACGCAGTAATAATTCAGAAGTATCAGTTCGTCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAGACGACCCCCCCCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGCTCAACTATGAGTGTGTCTGTTTGTTTTTCCTACTCAACAGAAATTATTATCGGTACTCTTCCACTTTTT ]
[+] EMBL CD140956 [ atatggGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACAATTAAAAACCGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCT ]
[+] EMBL CD166603 [ cgacatcagAATG AACTGAGTAGAGATCTACCT CTAAACGACCCCCACCACCTGATGCT ACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTG ]
[+] EMBL CD082928 [ CCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACAATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCTCTATCATACATTTCCTGATACAAATCATTCATGTGTTTTGTTTTGTTTGTCAAAAGAAACTATAATATTTCTATTTATTACAATTTTGTAAACAATAAACAATATTTTGTTATGCATGATCATACATACATATGTATCCATTTACCAACTTCATCTATATTCGGCTTCATGTGTATCTCTAATGTACAACGACGTAAGTGAACAATGAATGTATGTTTAAATGANTTCACTAGATCGTTCTCAAT]
consensusID : consensus_9615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[AACCGAATTCAACAGCGGTTAATCTACAGTTAATTCGTAGTTGCCTTGAAAAAATGCCTAAGGAGTTTCGTTTAAATTTAGGCTATTTAATGTGTTTCTTGCAGAAATTGTCTAGTCAATCAGATGTGAATAAAATGACTTCTGATAATTTATCAATAGTAATTGCACCAAACGTGTATAGACTTTCATCCTGTTCCATGAGTACTGGTAATAATATTGTCAATGGTAGTTCAGTACGACCAACTGAAGATTTAGGAAAATCTTTAGATTTCTTACAAAGCAATGGTCCAGGAATTCATTTAGTAGATATTCTTATTCAAAATGCAGAACAGTTATTTGGTCAAGAACAAGCCTCGTTTCGTCTAACTCATGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAA]
[+] EMBL CD153401 [AACCGAATTCAACAGCGGTTAATCTACAGTTAATTCGTAGTTGCCTTGAAAAAATGCCTAAGGAGTTTCGTTTAAATTTAGGCTATTTAATGTGTTTCTTGCAGAAATTGTCTAGTCAATCAGATGTGAATAAAATGACTTCTGATAATTTATCAATAGTAATTGCACCAAACGTGTATAGACTTTCATCCTGTTCCATGAGTACTGGTAATAATATTGTCAATGGTAGTTCAGTACGACCAACTGAAGATTTAGGAAAATCTTTAGATTTCTTACAAAGCAATGGTCCAGGAATTCATTTAGTAGATATTCTTATTCAAAATGCAGAACAGTTATTTGGTCAAGAACAAGCCTCGTTTCGTCTAACTCATGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9615#0 TCGGGCCAANATTCGGCACGAGGGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATC 60
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 GTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTT 120
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 CCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACC 180
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 AATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTC 240
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 ATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTC 300
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 AACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAA 360
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 TAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGG 420
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 AAAACAGAAATGATGGTGATAGTAACAGCATTTGTAGCAGTAATAATTCAGAAGTATCAG 480
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 TTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCA 540
consensus_9615#1 ------------------------------------------------------------
consensus_9615#0 CAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGT 600
consensus_9615#1 -----------------AACCGAATTCAACAGCGGTTAAT----CTACAGTTAATT-CGT 38
* * ***** * ** * * *** * ** ***
consensus_9615#0 CACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCAC 660
consensus_9615#1 AGTTGCCT--TGAAAAAATGC--CTAAGGAG-----TTTCGTTTAA---ATTTAGGCTAT 86
** * ** ***** ** ** ** * * *** * * *
consensus_9615#0 CTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTG 720
consensus_9615#1 TTAATGT--GTTTCTTGCAGAAATTGTCTA-GTCA--ATCAGATGTGAATAAAATGACT- 140
* *** * * * *** **** *** ** **** **** * ***
consensus_9615#0 TTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCA 780
consensus_9615#1 -TCTGATAATTTATCAATAGTAATTGCACCA--AACGTGTATAGACTTTCATCCTGTTCC 197
* ** * * *** ** ** ** * * **** * *** **** **
consensus_9615#0 ACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAA 840
consensus_9615#1 ATGAGTACTGGTAATAATATTGT--CAAT------GGTAGTTCAGTACGACCAACTGAAG 249
* * * ** * ** * * ** * * ** * * * * * * **
consensus_9615#0 ACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTA 900
consensus_9615#1 ATTTAGGAAAATCTTTAGATTTCTTACAAAGCAATGGTCCAGGAATTCATTTAGTAGATA 309
* * *** * * * * ** * * * * *** * * * **
consensus_9615#0 CTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCT 960
consensus_9615#1 TTCTT---ATTCAAAATGCAGAACAGTTATTTGGTCAAGAAC---------AAGCCTCGT 357
* ** *** * ** ** *** *** * * *** ** *** *
consensus_9615#0 CTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCTCTATCATACATTTCCTGATACA 1020
consensus_9615#1 TTCGTCTAACTC-ATGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTC-CATC 415
** * * * * ** ** * ** **** *** ** * ** ** * *
consensus_9615#0 AATCATTCATGTGTTTTGTTTTGTTTGTCAAAAGAAACTATAATATTTCTATTTATTACA 1080
consensus_9615#1 TGTCACTGGT-TCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATG 474
*** * * * * * ** ** ** * * * * *** *
consensus_9615#0 ATTTTGTAAACAATAAACAATATTTTGTTATGCATGATCATACATACATATGTATCCATT 1140
consensus_9615#1 GACTAGATAGCAGT--ACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATT 532
* * * ** * ** *** * *** * ***** ** * * * ***
consensus_9615#0 TACCAACTTCATCTATATT--CGGCTTCATGTGTATCTCTAATGTACAACGACGTAAGTG 1198
consensus_9615#1 AATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTC 592
* ** * * ** * * ** *** * ** * *
consensus_9615#0 AACAATGAATGTATGTTTAAATGANTTCACTAGATCGTTCTCAAT 1243
consensus_9615#1 AA------------------------------------------- 594
**
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||