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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 864 fasta sequence
[GCGATTGAATACGCCAATGTAAATATTCGCACGTAACAATTGGTCAACTTAGATCATATACTCCTCAACGTATCGACTATCTTTCGATTTCCATTGATTCTGAGGACTCACTTAAAGTTCTAATCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATTTGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATTTGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAAACACAGAGTTAGGGATTGATCTGAAGTTTTGGAAGGTTGGCAAGCACTTTAAAGGCATCAAAGATATACCTCTGGGAATACACTTTGTCTACTATAGTGCTGTAAATTCAGATTGTATGTCAGGGCAACGTGTTGGATTCGTAGCTAATTTCTCTCAACCTGGTTTTATTGTTAAGAAGTGGCAAAAAGAAGAAGAGGATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTCGTCTTGTTCCCTATTGTGGTCGTCTATATTCCTGTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCTATTATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTC]
[-] EMBL CD160944 [GCGATTGAATACGCCAATGTAAATATTCGCACGTAACAATTGGTCAACTTAGATCATATACTCCTCAACGTATCGACTATCTTTCGATTTCCATTGATTCTGAGGACTCACTTAAAGTTCTAATCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATTTGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATTTGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAAACACAGAGTTAGGGATTGATCTGAAGTTTTGGAAGGTTGGCAAGCACTTTAAAGGCATCAAAGATATACCTCTGGGAATACACTTTGTCTACTATAGTGCTGTAAATTCAGATTGTATGTCAGGGCAACGTGTTGGATTCGTAGCT ]
[+] EMBL CD195717 [ GGACTCACTTAAAGTTCTAACCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATTTGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATTTGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAAACACAGAGTTAGGGATTGATCTGAAGTTTTGGAGGGTTGGCAAGCACTTTAAAGGCATCAAAGATATAC ]
[-] EMBL CD186155 [ GTCTACTATAGTGCTGTAAATTCAGATTGTATGTCAGGGCAACGTGTTGGATTCGTAGCTAATTTCTCTCAACCTGGTTTTATTGTTAAGAAGTGGCAAAAAGAAGAAGAGGATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTC ]
[-] EMBL CD195161 [ TTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTCGTCTTGTTCCCTATTGTGGTCGTCTATATTCCTGTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCTATTATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAACAAAACCACT ]
[-] EMBL BG932468 [ ACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCTATCATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTC]
consensusID : consensus_9620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[GCATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATTCCCTATTGTGGTCGTCTATATTCCTTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTCCATCGGAAATCACTGCCCATTGTATGGATCAAACATATACCCTCTGTACTACTATAGACGTAATCTTCTCGAGCATCACATCTGAAAAGGCCAGTGGCCTGCTCGGTGAATTTCAGTTTGCTTTTCTCAATTTATTACTAAATCATTCAATAGAAGGCTGGGAACAGTGGCGTCGTATATTCCAATTACTTGCTAGTTGTGAGAAAGCGATTGTTGATTATCCTAATTTGTACATTGACTTCATTACAGTTATTTATCACCAGTTAAATAATGGTACTGGATATTTTCTTTTC]
[+] EMBL CD080893 [GCATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATTCCCTATTGTGGTCGTCTATATTCCTTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTCCATCGGAAATCACTGCCCATTGTATGGATCAAACATATACCCTCTGTACTACTATAGACGTAATCTTCTCGAGCATCACATCTGAAAAGGCCAGTGGCCTGCTCGGTGAATTTCAGTTTGCTTTTCTCAATTTATTACTAAATCATTCAATAGAAGGCTGGGAACAGTGGCGTCGTATATTCCAATTACTTGCTAGTTGTGAGAAAGCGATTGTTGATTATCCTAATTTGTACATTGACTTCATTACAGTTATTTATCACCAGTTAAATAATGGTACTGGATATTTTCTTTTC]
consensusID : consensus_9620#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 621 fasta sequence
[AAAATAATTTTTATTTCAGACTTGTTTACAGCTGTACAATGACAGGTGCTTCATCCCCGTCCCAGTCAAATTCTTCAATAGGGATTTCAGTTATATTTGGAGTACACCTTTGTAATAACTGATATGAAGTGATCATATCCCATTTGAATCGATGTTTTATGTTATGAGCGAAGCCGTCTGCACGTTTAAAGAGATCATTCAGAATATTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAAAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTATTTAGGCCACTGG]
[+] EMBL CD074725 [AAAATAATTTTTATTTCAGACTTGTTTACAGCTGTACAATGACAGGTGCTTCATCCCCGTCCCAGTCAAATTCTTCAATAGGGATTTCAGTTATATTTGGAGTACACCTTTGTAATAACTGATATGAAGTGATCATATCCCATTTGAATCGATGTTTTATGTTATGAGCGAAGCCGTCTGCACGTTTAAAGAGATCATTCAGAATATTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAAAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTATTTAGGCCACTGG]
[+] EMBL CD147729 [ TTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAGGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAGAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTA ]
[+] EMBL CD147348 [ TTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAGAGAAAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTA ]
[+] EMBL CD134293 [ GGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGat ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9620#0 GCGATTGAATACGCCAATGTAAATATTCGCACGTAACAATTGGTCAACTTAGATCATATA 60
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 ------------------------------------------------------------
consensus_9620#0 CTCCTCAACGTATCGACTATCTTTCGATTTCCATTGATTCTGAGGACTCACTTAAAGTTC 120
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 ------------------------------------------------------------
consensus_9620#0 TAATCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATT 180
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 ------------------------------------------------------------
consensus_9620#0 TGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATT 240
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 ------------------------------------------------------------
consensus_9620#0 TGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAA 300
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 ------------------------------------------------------------
consensus_9620#0 ACACAGAGTTAGGGATTGATCTGAAGTTTTGGAAGGTTGGCAAGCACTTTAAAGGCATCA 360
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 ------------------------------------------------------------
consensus_9620#0 AAGATATACCTCTGGGAATACACTTTGTCTACTATAGTGCTGTAAATTCAGATTGTATGT 420
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 --------------------------------------------AAAATAATTTTTATTT 16
consensus_9620#0 CAGGGCAACGTGTTGGATTCGTAGCTAATTTCTCTCAACCTGGTTTTATTGTTAAGAAGT 480
consensus_9620#1 ------------------------------------------------------------
consensus_9620#2 CAGACTTGTTTACAGCTGTACAATGACAGGTGCTTCATCCCCGTCCCAGTCAAATTCTTC 76
consensus_9620#0 GGCAAAAAGAAGAAGAGGATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTA 540
consensus_9620#1 ----------------GCATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTA 44
consensus_9620#2 AATAGGGATTTCAGTTATATTTGGAGTACACCTTTGTAATAACTGAT---ATGAAGTG-A 132
**** * * * *** *** ** * * *
consensus_9620#0 TTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACA 600
consensus_9620#1 TTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACA 104
consensus_9620#2 TCATATCCCATTTGAATCGATGTTTTATGTTATGAGCGAAGCCGTCTGCACGTTTAAAGA 192
* ** ** **** ** * ** ***** * * ** ***** *** * *
consensus_9620#0 GAGATTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTCGTCTTGTTCCCT 660
consensus_9620#1 GAGATTGGATTTCGCTGTCTAATTTTAT---------------------------TCCCT 137
consensus_9620#2 GATCATTCAGAATATTA-CTAGTTTCACTGGGACATGTTTTGTTAGTTATATCA-GAAGT 250
** * * * *** *** * *
consensus_9620#0 ATTGTGGTCGTCTATATTCCTGTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAAC 720
consensus_9620#1 ATTGTGGTCGTCTATATTCCT-TCCACACTTCTTATCTAAACCCTCGAATACCCAAGAAC 196
consensus_9620#2 ACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTC 310
* * ***** * * ** * *** * * *** * *
consensus_9620#0 GCCTGGCTCTTAAAAGTTCCCATA--CGACTGACTGTTCAAATAAAA-ATTCAGAAGACC 777
consensus_9620#1 GCCTGGCTCTTAAAAGTTCCCATA--CGACTGACTGTTCAAATAAAA-ATTCAGAAGACC 253
consensus_9620#2 GGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAAAATATCCAGTAACTC 370
* * ** * * * * * *** * *** **** ** *** * *
consensus_9620#0 TCTTACCAAATT--TATCTATTATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAAC 835
consensus_9620#1 TCTTACCAAATT--TATCNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTTCAATTCCAAC 311
consensus_9620#2 CACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAAT 430
* *** ** **** * **
consensus_9620#0 AAAACCACTTTATCCACCACTTTCATCTC------------------------------- 864
consensus_9620#1 AAAACCACTTTATCCACCACTTTCATCTCCATCGGAAATCACTGCCCATT-GTATGGATC 370
consensus_9620#2 AACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGC 490
** * * * ** **
consensus_9620#0 ------------------------------------------------------------
consensus_9620#1 AAACATATACCCTCTGTACTACTATAGACGTAATCTTCTCGAGCATCACATCTGAAAAGG 430
consensus_9620#2 AAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAA 550
consensus_9620#0 ------------------------------------------------------------
consensus_9620#1 CCAGTGGCCTGCTCGGTGAATTTCAGTTTGCTTTTCTCAATTTATTACTAAATCATTCAA 490
consensus_9620#2 ATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTATT 610
consensus_9620#0 ------------------------------------------------------------
consensus_9620#1 TAGAAGGCTGGGAACAGTGGCGTCGTATATTCCAATTACTTGCTAGTTGTGAGAAAGCGA 550
consensus_9620#2 TAGGCCACTGG------------------------------------------------- 621
consensus_9620#0 ------------------------------------------------------------
consensus_9620#1 TTGTTGATTATCCTAATTTGTACATTGACTTCATTACAGTTATTTATCACCAGTTAAATA 610
consensus_9620#2 ------------------------------------------------------------
consensus_9620#0 -----------------------
consensus_9620#1 ATGGTACTGGATATTTTCTTTTC 633
consensus_9620#2 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||