These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 600 fasta sequence [TCCTTACGGAATCTGGTCTGTTGATCTCGAAGTTTGGTGTCTACTGAATCTTTCATCCGCTTCAGTAACACTATTTAAAACTTTTCCTGGTACCAACATTAGTGTGATGCCTCTGTAGTTTGCATATTTTCTCAGATCTCCTTTCTTTGGGATTTTGATGAGATAGAGCATGTTTGCAGTTACTTCTATGTCTGACTTTAGTGCTTCAGCTGGTATGCTGTCAGGTCTTACGGCTTTCTCACTCTTGATTTGTTTTATATATATAAGCAGCTATTTTCATGTTAAAAGATAACATATTTTTTTAAGTTTAATCACCAATTATATTTTATTTCTTTCATGAATTATTTCGTGAAGCGTTTCATACAATTATACTTTAATTTTAAATTTGCCATCATATTGACATTGG--TATATATATATATCAAGCTTCCAGGGATAAAGAGGTGACAATTATTACTGATAAATTAATCGTCATTCATATGTTATTATCACCTTAATTGTTGTTTTATTTCTCCATCATCTCTCTCACACACACTTTTTTTAACTCATAATCGCTAAGAAAGGAAACAATCCGGATTCAATTGNGTATGTTTGGTTTACTTT] [+] EMBL CD094601 [TCCTTACGGAATCTGGTCTGTTGATCTCGAAGTTTGGTGTCTACTGAATCTTTCATCCGCTTCAGTAACACTATTTAAAACTTTTCCTGGTACCAACATTAGTGTGATGCCTCTGTAGTTTGCATATTTTCTCAGATCTCCTTTCTTTGGGATTTTGATGAGATAGAGCATGTTTGCAGTTACTTCTATGTCTGACTTTAGTGCTTCAGCTGGTATGCTGTCAGGTCTTACGGCTTTCTCACTCTTGATTTGTTTTATATATATAAGCAGCTATTTTCATGTTAAAAGATAACATATTTTTTTAAGTTTAATCACCAATTATATTTTATTTCTTTCATGAATTATTTCGTGAAGCGTTTCATACAATTATACTTTAATTTTAAATTTGCCATCATATTGACATTGGTATATATATATATATCAAGCTTCCAGGGATAAAGAGGTGACAATTATTACTGATAAATTAATCGTCATTCATATGTTATTATCACCTTAATTGTTGTTTTATTTCTCCATCATCTCTCTCACACACACTTTTTTTAACTCATAATCGCTAAGAAAGGAAACAATCCGGATTCAATTGNGTATGTTTGGTTTACTT ] [+] EMBL CD095236 [TCCTTACGGAATCTGGTCTGTTGATCTCGAAGTTTGGTGTCTACTGAATCTTTCATCCGCTTCAGTAACACTATTTAAAACTTTTCCTGGTACCAACATTAGTGTGATGCCTCTGTAGTTTGCATATTTTCTCAGATCTCCTTTCTTTGGGATTTTGATGAGATAGAGCATGTTTGCAGTTACTTCTATGTCTGACTTTAGTGCTTCAGCTGGTATGCTGTCAGGTCTTACGGCTTTCTCACTCTTGATTTGTTTTATATATATAAGCAGCTATTTTCATGTTAAAAGATAACATATTTTTTTAAGTTTAATCACCAATTATATTTTATTTCTTTCATGAATTATTTCGAGAAGCGTTTCATACAATTATACTTTAATTTTAAATTTGCCATCATATTGACATTGG TATATATATATATCAAGCTTCCAGGGA ] [-] EMBL CD095367 [ GGTGGCTACTGAATCTTTCATCCGCTTCAGTAACACTATTTAAAACTTTTCCTGGTACCAACATTAGTGTGATGCCTCTGTAGTTTGCATATTTTCTCAGATCTCCTTTCTTTGGGATTTTGATGAGATAGAGCATGTTTGCAGTTACTTCTATGTCTGACTTTAGTGCTTCAGCTGGTATGCTGTCAGGTCTTACGGCTTTCTCACTCTTGATTTGTTTTATATATATAAGCAGCTATTTTCATGTTAAAAGATAACATATTTTTTTAAGTTTAATCACCAATTATATTTTATTTCTTTCATGAATTATTTCGTGAAGCGTTTCATACAATTATACTTTAATTTTAAATTTGCCATCATATTGACATTGG TATATATATATATCAAGCTTCCAGGGATAAAGAGGTGACAATTATTACTGATAAATTAATCGTCATTCATATGTTATTATCACCTTAATTGTTGTTTTATTTCTCCATCATCTCTCTCACACACACTTTTTTTAACTCATAATCGCTAAGAAAGGAAACAATCCGGATTCAATTGTGTATGTTT GTTTACTTT] consensusID : consensus_9622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [AAGGATGAGGAAGGCAGGCCAAACACCGAGATTCAAGAACAGAGGAACATATGGGTAGAATAATGTGAGGAACTCTTGAGTAGACCAGCTCCATTCAATCCACAGGACATCGAAGCAGCACACACAGACATCCCTATAGATGTCACCCCACCAACGATTGAAGAAATCAATTGTGACCATCAGACAAATCAAGAGTGGAAAAGCAGCAGGACCTGACAATATACCAGCTGAAGCACTGAAGTCAGACATGGAAGTAACTGCAAACATGCTTCACTTTCTATGCAAGAAGATTTGGGAGGAGGGACAAGTGCCAACGAACGGGAAAGAAGGACACCACCAAAGAAAGATCTAAGCAAATGTGAGGACTATCGAGGCATCACATTACTATCAGTGTCACGTCAGGATTTCAACAGAGTGTTTTTGAACCGGATGAAAGATTCGGTAGACATTCAACTTCGAGATCAACAGACT] [+] EMBL CD184885 [AAGGATGAGGAAGGCAGGCCAAACACCGAGATTCAAGAACAGAGGAACATATGGGTAGAATAATGTGAGGAACTCTTGAGTAGACCAGCTCCATTCAATCCACAGGACATCGAAGCAGCACACACAGACATCCCTATAGATGTCACCCCACCAACGATTGAAGAAATCAATTGTGACCATCAGACAAATCAAGAGTGGAAAAGCAGCAGGACCTGACAATATACCAGCTGAAGCACTGAAGTCAGACATGGAAGTAACTGCAAACATGCTTCACTTTCTATGCAAGAAGATTTGGGAGGAGGGACAAGTGCCAACGAACGGGAAAGAAGGACACCACCAAAGAAAGATCTAAGCAAATGTGAGGACTATCGAGGCATCACATTACTATCAGTGTCACGTCAGGATTTCAACAGAGTGTTTTTGAACCGGATGAAAGATTCGGTAGACATTCAACTTCGAGATCAACAGACT] consensusID : consensus_9622#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 439 fasta sequence [AGCCTTATACGCTCTGCTGAAAGGACAAGAAAGTACTATGAGGACAACTGGAAAGGGATCAAAGAAGCATTAGTTTCAAAGTGTCAGGAGGTTCTGAGCCGCAAGAAGCATCATCATAAGGAATGGATCTCTATATCCATCAGACAAATCAAGAGTGGGAAAGCAGCAGGACCTGACAATATACCAACTGAAGTCAGACATTGAAGTAACTCCAAACATGCTTCATCTTCTATTCAAGGAGATTTGGGAAGGGTAGCAAGTGCAAACGACAGACTGGAAGAAGGACACTTCATCAAGATACTAAGAAAAGGAGATCTGAGCAAATGTGGGAACTACAGAGGCATCACACATGTGCATGGGAAGCATCATCGATGAACAAGAAGGATTGGATGCAGACGTAAAGGCGAGGAATGGCANAGGAAAGGTCACATT-CCTGCAA] [+] EMBL CD120481 [AGCCTTATACGCTCTGCTGAAAGGACAAGAAAGTACTATGAGGACAACTGGAAAGGGATCAAAGAAGCATTAGTTTCAAAGTGTCAGGAGGTTCTGAGCCGCAAGAAGCATCATCATAAGGAATGGATCTCTATATCCATCAGACAAATCAAGAGTGGGAAAGCAGCAGGACCTGACAATATACCAACTGAAGTCAGACATTGAAGTAACTCCAGACATGCTTCATCTTCTATTCAAGGAGATTTGGGAAGGGTAGCAAGTGCAAACGACAGACTGGAAGAAGGACACTTCATCAAGATACTAAGAAAAGGAGATCTGAGCAAATGTGGGAACTACAGAGGCATCACACATGTGCATGGGAAGCATCATCGATGAACAAGAAGGATTGGATGCAGACGTAAAGGCGAGNAATGGCAAAGGAAAGGTCACATT CCTGCAA] [+] EMBL CD120036 [AGCCTTATACGCTCTGCTGAAAGGACAAGAAAGTACTATGAGGACAACTGGAAAGGGATCAAAGAAGCATTAGTTTCAAAGTGTCAGGAGGTTCTGAGCCGCAAGAAGCATCATCATAAGGAATGGATCTCTATATCCATCAGACAAATCAAGAGTGGGAAAGCAGCAGGACCTGACAATATACCAACTGAAGTCAGACATTGAAGTAACTCCAAACATGCTTCATCTTCTATTCAAGGAGATTTGGGAAGGGTAGCAAGTGCAAACGACAGACTGGAAGAAGGACACTTCATCAAGATACTAAGAAAAGGAGATCTGAGCAAATGTGGGAACTACAGAGGCATCACACATGTGCATGGGAAGCATCATCGATGAACAAGATAGATTGGATGCAGACGTAAAGGCGAGGAATGGCANAGGAATGGTCACATTNCCTGCA ] [+] EMBL CD120228 [AGCCTTATACGCTCTGCTGAAAGGACAAGAAAGTACTATGAGGACAACTGGAAAGGGATCAAAGAAGCATTAGTTTCAAAGTGTCAGGAGGTTCTGAGCCGCAAGAAGCATCATCATAAGGAATGGATCTCTATATCCATCAGACAAATCAAGAGTGGGAAAGCAGCAGGACCTGACAATATACCAACCGAAGTCAGACATTGAAGTAACTCCAAACATGCTTCATCTTCTATTCAAGGAGATTTGGGAAGGGTAGCAAGTGCAAACGACAGACTGGGAGAAGGACACTTCATNCAGATACTAAGAAAAGGAGATCTGAGCAAATGTGGGAACTACAGAGG ] [+] EMBL CD120012 [atCCTTATACGCTCTGCTGAAAGGACAAGAAAGTACTATGAGGACAACTGGAAAGGGATCAAAGAAGCATTAGTTTCAAAGTGTCAGGAGGTTCTGAGCCGCAAGAAGCATCATCATAAGGAATGGATCTCTATATCCATCAGACAAATCAAGAGTGGGAAAGCAGCAGGACCTGACAATATACCAACTGAAGTCAGACATTGAAGTAACTCCAAACATGCTTCATCTTCTATTCAAGGAGATTTGGGAAGGGTAGCAAGTGCAAACGACAGACTGGAAGAAGGACACTTCATCAAGATACTAAGAAAAGGAGATCTGAGCAAATGTGGGAACTACAGAGGCATCACACATGTGCATGGGAAGCATCATCGATGAACAAGAAGGATTGGATGCAGACGTAAAGGCGAGGAATGGCANAGGAAGGGTCACATN TCTGCAA] consensusID : consensus_9622#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [CAAGGCACAAGCTAATTACGTAGAAGCGAACAGTCAAGTGAAGAGAAGCATAAAAGTTGACACACAAACCTTCCTATAGATGTCACTCCACCAAGGACCGAAAAAAATCAAGAATGGGAAAACAAAAGGACCTGACAATATACCAGCTGAAGCACTGAAGTCAGACATTAAAGTAACTACAAAGATGCTTCACCTTCTATTCAAGATTTGGAAGGAAGAACAAGTGCCACCGACAGGCTGGAAAGAAGGATACTTCATCAAGATTCCAAAGTAAGGAGATATGAGCAAATATGAAG] [+] EMBL CD117841 [CAAGGCACAAGCTAATTACGTAGAAGCGAACAGTCAAGTGAAGAGAAGCATAAAAGTTGACACACAAACCTTCCTATAGATGTCACTCCACCAAGGACCGAAAAAAATCAAGAATGGGAAAACAAAAGGACCTGACAATATACCAGCTGAAGCACTGAAGTCAGACATTAAAGTAACTACAAAGATGCTTCACCTTCTATTCAAGATTTGGAAGGAAGAACAAGTGCCACCGACAGGCTGGAAAGAAGGATACTTCATCAAGATTCCAAAGTAAGGAGATATGAGCAAATATGAAG] consensusID : consensus_9622#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [AGATTCGGAAGCAGAGCAAAAGATGGGTGGAACACTTGGAGGGACTCTTGAATAGATTAGTCCTCTGAGCACACCGGACACCGAAGCAGCGTCCATAGATGTCACTCCACCAACGATCGGAGAAATCAGGATTGCCATCAGACAAATCAAGAGTGAGAAAGCAGCAGGACCTGACAATATACCAGCTGAAGAAACTGCAAACCTGCTCCATGTTTTATTCAGGAAAATTTGGGA] [+] EMBL CD182237 [AGATTCGGAAGCAGAGCAAAAGATGGGTGGAACACTTGGAGGGACTCTTGAATAGATTAGTCCTCTGAGCACACCGGACACCGAAGCAGCGTCCATAGATGTCACTCCACCAACGATCGGAGAAATCAGGATTGCCATCAGACAAATCAAGAGTGAGAAAGCAGCAGGACCTGACAATATACCAGCTGAAGAAACTGCAAACCTGCTCCATGTTTTATTCAGGAAAATTTGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9622#2 --------------------------AGCCTTATACGCTCTGCTGAAAGGA-CAAGA-AA 32 consensus_9622#3 --------------------------------------------CAAGGCA-CAAGCTAA 15 consensus_9622#1 AAGGATGAGGAAGGCAGGCCAAACACCGAGATTCAAGAACAGAGGAACATA-TGGGTAGA 59 consensus_9622#4 ----------------------------AGATTCGGAAGCAGAGCAAAAGA-TGGGTGGA 31 consensus_9622#0 ---------------------------TCCTTACGGAATCTGGTCTGTTGATCTCGAAGT 33 * * consensus_9622#2 GTACTATGAGGACAACTGGAAAGGGATCAAAGAAGCATTAGTTTCAAAGTGTC---AGGA 89 consensus_9622#3 TTACGTAGAAGCGAACAGTCAAGTGA--AGAGAAGCATAA-----AAGTTGAC---ACAC 65 consensus_9622#1 ATAATGTGAGG-AACTCTTGAGTAGACCAGCTCCATTCAATCCACAGGACATC---GAAG 115 consensus_9622#4 ACACTTGGAGG-GACTCTTGAATAGATTAG-TCCTCTGAGCACACCGGACACC---GAAG 86 consensus_9622#0 TTGGTGTCTACTGAATCTTTCATCCGCTTCAGTAACACTATTTAAAACTTTTCCTGGTAC 93 * * consensus_9622#2 GGTTCTGAG---------CCGCAAGAAGCATCATCATAAGGAATGGATCTCTATATC--- 137 consensus_9622#3 AAACCTT-----------CCTATAGATGTCACTCCACCAAGGACCGA------------- 101 consensus_9622#1 CAGCACACACA-GACATCCCTATAGATGTCACCCCACCAACGATTGAAGAAATCAATTGT 174 consensus_9622#4 CAGCGT-------------CCATAGATGTCACTCCACCAACGATCGGAGAAATCAGG-AT 132 consensus_9622#0 CAACATTAGTGTGATGCCTCTGTAGTTTGCATATTTTCTCAGATCTCCTTTCTTTGGGAT 153 * ** * consensus_9622#2 ---CATCAGACAAATCAAGAGTGGGAAAGCAGCAGGACCTGAC---AATATACCA----- 186 consensus_9622#3 --------AAAAAATCAAGAATGGGAAAACAAAAGGACCTGAC---AATATACCAGCTGA 150 consensus_9622#1 GACCATCAGACAAATCAAGAGTGGAAAAGCAGCAGGACCTGAC---AATATACCAGCTGA 231 consensus_9622#4 TGCCATCAGACAAATCAAGAGTGAGAAAGCAGCAGGACCTGAC---AATATACCAGCTGA 189 consensus_9622#0 TTTGATGAGATAGAGCATGTTTGCAGTTACTTCTATGTCTGACTTTAGTGCTTCAGCTGG 213 * * * ** * ** * ***** * * ** consensus_9622#2 ---ACTG--AAGTCAGACATTGAAGTAACTCCAAACATGCTTCATCT-TCTATTCAAGGA 240 consensus_9622#3 AGCACTG--AAGTCAGACATTAAAGTAACTACAAAGATGCTTCACCT-TCTATTCAAG-- 205 consensus_9622#1 AGCACTG--AAGTCAGACATGGAAGTAACTGCAAACATGCTTCACTT-TCTATGCAAGAA 288 consensus_9622#4 AGAA-----------------------ACTGCAAACCTGCTCCATGT-TTTATTCAGGAA 225 consensus_9622#0 TATGCTGTCAGGTCTTACGGCTTTCTCACTCTTGATTTGTTTTATATATATAAGCAGCTA 273 *** * ** * * * * ** ** consensus_9622#2 GATTTGGGAAGGGTAGCAA-GTGCAAACGACAGACTGGA-A-GAAGGACACTTCATC--- 294 consensus_9622#3 -ATTTGGAAGGAAGAACAA-GTGCCACCGACAGGCTGGA-AAGAAGGATACTTCATC--- 259 consensus_9622#1 GATTTGGGAGGAGGGACAA-GTGCCAACGAACGGGAAAG-AAGGACACCACCAAAGA--- 343 consensus_9622#4 AATTTGGGA--------------------------------------------------- 234 consensus_9622#0 TTTTCATGTTAAAAGATAACATATTTTTTTAAGTTTAATCACCAATTATATTTTATTTCT 333 ** consensus_9622#2 -------AAGATACTAAGAAAAGGAG-ATCTGAGCAAATGTGGGAACTACAGAGGCATCA 346 consensus_9622#3 -------AAGATTCCAAAGTAAGGAG-ATATGAGCAAATATGAAG--------------- 296 consensus_9622#1 -------AAGATCTAAGCAAATGTGA-GGACTATCGAGGCATCACATTACTATCAGTGTC 395 consensus_9622#4 ------------------------------------------------------------ consensus_9622#0 TTCATGAATTATTTCGTGAAGCGTTTCATACAATTATACTTTAATTTTAAATTTGCCATC 393 consensus_9622#2 CACATGTGCATGGGAAGCATCATCGATGAACAAGAAGGATTGGATGCAGACGTAAAGGCG 406 consensus_9622#3 ------------------------------------------------------------ consensus_9622#1 ACGTCAGGATTTCAACAGAGTGTTTTTGAACCGGATGAAAGATTCGGTAGACATTCAACT 455 consensus_9622#4 ------------------------------------------------------------ consensus_9622#0 ATATTGACATTGGTATATATATATATCAAGCTTCCAGGGATAAAGAGGTGACAATTATTA 453 consensus_9622#2 AGGAATGGCANAGGAAAGGTCACATTCCTGCAA--------------------------- 439 consensus_9622#3 ------------------------------------------------------------ consensus_9622#1 TCGAGATCAACAGACT-------------------------------------------- 471 consensus_9622#4 ------------------------------------------------------------ consensus_9622#0 CTGATAAATTAATCGTCATTCATATGTTATTATCACCTTAATTGTTGTTTTATTTCTCCA 513 consensus_9622#2 ------------------------------------------------------------ consensus_9622#3 ------------------------------------------------------------ consensus_9622#1 ------------------------------------------------------------ consensus_9622#4 ------------------------------------------------------------ consensus_9622#0 TCATCTCTCTCACACACACTTTTTTTAACTCATAATCGCTAAGAAAGGAAACAATCCGGA 573 consensus_9622#2 --------------------------- consensus_9622#3 --------------------------- consensus_9622#1 --------------------------- consensus_9622#4 --------------------------- consensus_9622#0 TTCAATTGNGTATGTTTGGTTTACTTT 600 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||