These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 369 fasta sequence [TTCTACGACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA--GCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAAACTTGTCGCGGCCGC] [+] EMBL CD135258 [TTCTACGACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA G ] [-] EMBL CD148447 [ TTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA GCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATG ] [+] EMBL CD180707 [ TTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTTGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTA ] [-] EMBL CD148445 [ TTGCTTGTAACGCGATCACCATGCCGCTCGATCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGAATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACATACAGCTGTAGTTTGTGCTGGATGTGACCGAATTCTATGTCACGGCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATG ] [+] EMBL CD141943 [ TTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA GCCCACTGGTGGTAGAGCACGGCTGGCTGATG ] [+] EMBL CD135438 [ ggataGTGATTTGTTACATNCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGCCCCCTATGTCA G ] [+] EMBL CD148906 [ TACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA CCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAAACTTGTCGCGGCCGC] [+] EMBL CD148910 [ TACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCTCACCAAATTCCTTTTTCTTGGATGTTAAGTGTTCAGGCTTGCT AAAATCCAGATTGTTTTCA TCATCCCCA AC GCTGTAATTTGTCCTGGATGTGACCGAATTCTATGTCA GCCCACTGGTGGTAAAGCACGGCTGGCTGATGGATGCATTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAAACTTGTCGCGGCCGt] [+] EMBL AA629492 [ cacgagCCTCACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTTTCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCA GCCCACTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTTCTTGTAAATTCCGATTGTTATAATAAACTTATG ] consensusID : consensus_9623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 94 fasta sequence [GCGGTTCGCGTGCACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAAGAGCGAAA] [+] EMBL CD135158 [GCGGTTCGCGTGCACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACTTGTTACATCCGTCTTTTCGAGAGGAAGAGCGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9623#0 -----TTCTACG-ACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACT 54 consensus_9623#1 GCGGTTCGCGTGCACATTTGGTTGCTTGTAACGCGATCACCATGCCGCTCGCTCGTGACT 60 * * *********************************************** consensus_9623#0 TGTTACATCCGTCTTTTCGAGAGGAGAAGCGAAAGTGCAAATTGAAACGTTTGGTTCCCT 114 consensus_9623#1 TGTTACATCCGTCTTTTCGAGAGGAAGAGCGAAA-------------------------- 94 ************************* ******* consensus_9623#0 CACCAAATTCCTTTTTCATGGATGTTAAGTGTTCAGGCTGCCTAAAAATCCAGATTGTTT 174 consensus_9623#1 ------------------------------------------------------------ consensus_9623#0 TCAGTCATGCACAGACAGCTGTAGTTTGTCCTGGATGTGACCGAATTCTATGTCAGCCCA 234 consensus_9623#1 ------------------------------------------------------------ consensus_9623#0 CTGGTGGTAGAGCACGGCTGGCTGATGGATGCAGTTACCGCAAGAAGGCGAAATGATTTT 294 consensus_9623#1 ------------------------------------------------------------ consensus_9623#0 CTTGTAAATTCCGATTGTTATAATAAACTTATGGAAACAATTTAAAAAAAAAAAAAAAAA 354 consensus_9623#1 ------------------------------------------------------------ consensus_9623#0 ACTTGTCGCGGCCGC 369 consensus_9623#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||