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Schistosoma mansoni
cluster # 9626 cluster # 9626       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9626#0 length = 1185 sequences # 4  
consensus_9626#1 length = 249 sequences # 1  
consensus_9626#2 length = 238 sequences # 5  

consensusID : consensus_9626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1185
fasta sequence
                              [AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCATTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTTTACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAATAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGATTTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAACAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCAGCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCATCACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAATCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAACAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAGATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANAATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTACTACAGAATATCCTGAA]

[-] EMBL CD200430             [AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCATTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTTTACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAATAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGATTTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAACAATAGTAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD189111             [                                                                                                                                                                                                                                                                                                        GTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTNTATGAAAAACAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCAGCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCATCACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAATCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACCATATGTTAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD158996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAACAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAGATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANAATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTACTACAGAATATCCTGAA]
[+] EMBL CD137902             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAG TTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGA                                                                                                                                                                                                                                    ]


>consensus_9626#0 AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCA TTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTT TACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAA TAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGAT TTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAG TTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAA CAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCA GCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCAT CACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAA TCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCA GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAA GAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTT GGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACAC GGACAGTTTAGTTTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAA AGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGA ATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGAATA GTGAGTGATGAAAACAACTGTCAATCAACAAAAAAACTTCCCACAACAAGTGTTACACAA TCAGAAGTTTTTACTAGTTGTCAACCAGATGAAACAACTAAACTGACGAATGCAACTGTA GATTGTACATATGGAGAGAATTCCCANAATCANAATGTAGATAATAATCAGTCTATTGGC GCAAGCTCTGTTCTTGAAGCTCTGCTTACTACAGAATATCCTGAA



consensusID : consensus_9626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence
                              [GTTTGTTTATGTGCATCTCCACATAGCTTTTCAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG]

[-] EMBL CD158983             [GTTTGTTTATGTGCATCTCCACATAGCTTTTCAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG]


>consensus_9626#1 GTTTGTTTATGTGCATCTCCACATAGCTTTTCAGTATTTAATAACCGCATCTCCGCTGAA GAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTT GGATGCATACATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACAC GGACAGTTTAGTTTAGAGGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAA AGAAGAAGG



consensusID : consensus_9626#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 238
fasta sequence
                              [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT]

[+] EMBL CD199626             [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ]
[+] EMBL CD199662             [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAGGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ]
[+] EMBL CD199688             [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTA TTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ]
[-] EMBL CD199699             [ CTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT]
[-] EMBL CD199782             [ CTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT]


>consensus_9626#2 ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTG CCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGAT TTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCA GAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9626#0      AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCA 60
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      TTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTT 120
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      TACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAA 180
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      TAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGAT 240
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      TTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAG 300
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      TTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAA 360
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      CAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCA 420
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      GCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCAT 480
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      CACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAA 540
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      TCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCA 600
consensus_9626#1      ---------------------------GTTTGTTTATGTGCATCTCCACATAGCTTTTCA 33
consensus_9626#2      ----------------------ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCA 38
                                                 *********************************

consensus_9626#0      GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAA 660
consensus_9626#1      G---------------------------------TATTTAATAACCGCATCTCCGCTGAA 60
consensus_9626#2      GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAA 98
                      *                                 **************************

consensus_9626#0      GAAGCGATACAATATGTTAGATTTCGAAG------------------------------- 689
consensus_9626#1      GAAGCGATACAATATGTTAGATTTCGAAG------------------------------- 89
consensus_9626#2      GAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATA 158
                      *****************************                               

consensus_9626#0      -ACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATT 748
consensus_9626#1      -ACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATT 148
consensus_9626#2      GACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATT 218
                       **************************************** ******************

consensus_9626#0      TGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCA 808
consensus_9626#1      TGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCA 208
consensus_9626#2      TGTATCTTTACCGAATATAT---------------------------------------- 238
                      ********************                                        

consensus_9626#0      AACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAA 868
consensus_9626#1      AACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG------------------- 249
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      TTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTAC 928
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      AAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAA 988
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      CAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAG 1048
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      ATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANA 1108
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      ATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTA 1168
consensus_9626#1      ------------------------------------------------------------
consensus_9626#2      ------------------------------------------------------------
                                                                                  

consensus_9626#0      CTACAGAATATCCTGAA 1185
consensus_9626#1      -----------------
consensus_9626#2      -----------------
                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)