These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1185 fasta sequence [AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCATTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTTTACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAATAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGATTTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAACAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCAGCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCATCACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAATCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAACAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAGATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANAATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTACTACAGAATATCCTGAA] [-] EMBL CD200430 [AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCATTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTTTACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAATAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGATTTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAACAATAGTAAGT ] [-] EMBL CD189111 [ GTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTNTATGAAAAACAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCAGCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCATCACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAATCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACCATATGTTAGA ] [+] EMBL CD158996 [ GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAACAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAGATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANAATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTACTACAGAATATCCTGAA] [+] EMBL CD137902 [ GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAG TTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGA ] consensusID : consensus_9626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [GTTTGTTTATGTGCATCTCCACATAGCTTTTCAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG] [-] EMBL CD158983 [GTTTGTTTATGTGCATCTCCACATAGCTTTTCAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG] consensusID : consensus_9626#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 238 fasta sequence [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT] [+] EMBL CD199626 [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ] [+] EMBL CD199662 [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAGGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ] [+] EMBL CD199688 [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTA TTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ] [-] EMBL CD199699 [ CTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT] [-] EMBL CD199782 [ CTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9626#0 AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCA 60 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 TTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTT 120 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 TACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAA 180 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 TAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGAT 240 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 TTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAG 300 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 TTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAA 360 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 CAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCA 420 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 GCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCAT 480 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 CACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAA 540 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 TCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCA 600 consensus_9626#1 ---------------------------GTTTGTTTATGTGCATCTCCACATAGCTTTTCA 33 consensus_9626#2 ----------------------ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCA 38 ********************************* consensus_9626#0 GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAA 660 consensus_9626#1 G---------------------------------TATTTAATAACCGCATCTCCGCTGAA 60 consensus_9626#2 GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAA 98 * ************************** consensus_9626#0 GAAGCGATACAATATGTTAGATTTCGAAG------------------------------- 689 consensus_9626#1 GAAGCGATACAATATGTTAGATTTCGAAG------------------------------- 89 consensus_9626#2 GAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATA 158 ***************************** consensus_9626#0 -ACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATT 748 consensus_9626#1 -ACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATT 148 consensus_9626#2 GACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATT 218 **************************************** ****************** consensus_9626#0 TGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCA 808 consensus_9626#1 TGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCA 208 consensus_9626#2 TGTATCTTTACCGAATATAT---------------------------------------- 238 ******************** consensus_9626#0 AACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAA 868 consensus_9626#1 AACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG------------------- 249 consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 TTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTAC 928 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 AAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAA 988 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 CAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAG 1048 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 ATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANA 1108 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 ATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTA 1168 consensus_9626#1 ------------------------------------------------------------ consensus_9626#2 ------------------------------------------------------------ consensus_9626#0 CTACAGAATATCCTGAA 1185 consensus_9626#1 ----------------- consensus_9626#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||